data_6K9H
#
_model_server_result.job_id            CowEZkKvzO5Rv3jRGb_Itw 
_model_server_result.datetime_utc      '2024-11-29 10:48:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6k9h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    6K9H 
#
_exptl.entry_id    6K9H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              364.438 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "~{tert}-butyl (2'~{S},3~{S})-2-oxidanylidene-2'-phenyl-spiro[1~{H}-indole-3,3'-pyrrolidine]-1'-carboxylate" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6K9H 
_cell.length_a            65.518 
_cell.length_b            65.518 
_cell.length_c            115.517 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6K9H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C22 H24 N2 O3' 
_chem_comp.formula_weight    364.438 
_chem_comp.id                D40 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "~{tert}-butyl (2'~{S},3~{S})-2-oxidanylidene-2'-phenyl-spiro[1~{H}-indole-3,3'-pyrrolidine]-1'-carboxylate" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 C17 D40 sing 83 n n 
C19 C17 D40 sing 84 n n 
C17 O16 D40 sing 85 n n 
C17 C18 D40 sing 86 n n 
O16 C14 D40 sing 87 n n 
C14 O15 D40 doub 88 n n 
C14 N11 D40 sing 89 n n 
C27 C26 D40 doub 90 n y 
C27 C22 D40 sing 91 n y 
N11 C12 D40 sing 92 n n 
N11 C10 D40 sing 93 n n 
C12 C13 D40 sing 94 n n 
O21 C8 D40 doub 95 n n 
C10 C22 D40 sing 96 n n 
C10 C9 D40 sing 97 n n 
C26 C25 D40 sing 98 n y 
C13 C9 D40 sing 99 n n 
C22 C23 D40 doub 100 n y 
C8 C9 D40 sing 101 n n 
C8 N7 D40 sing 102 n n 
C9 C5 D40 sing 103 n n 
C25 C24 D40 doub 104 n y 
C23 C24 D40 sing 105 n y 
N7 C4 D40 sing 106 n n 
C5 C4 D40 doub 107 n y 
C5 C6 D40 sing 108 n y 
C4 C3 D40 sing 109 n y 
C6 C1 D40 doub 110 n y 
C3 C2 D40 doub 111 n y 
C1 C2 D40 sing 112 n y 
C27 H1 D40 sing 113 n n 
C26 H2 D40 sing 114 n n 
C25 H3 D40 sing 115 n n 
C24 H4 D40 sing 116 n n 
C23 H5 D40 sing 117 n n 
C20 H6 D40 sing 118 n n 
C20 H7 D40 sing 119 n n 
C20 H8 D40 sing 120 n n 
C19 H9 D40 sing 121 n n 
C19 H10 D40 sing 122 n n 
C19 H11 D40 sing 123 n n 
C18 H12 D40 sing 124 n n 
C18 H13 D40 sing 125 n n 
C18 H14 D40 sing 126 n n 
C1 H15 D40 sing 127 n n 
C2 H16 D40 sing 128 n n 
C3 H17 D40 sing 129 n n 
C13 H18 D40 sing 130 n n 
C13 H19 D40 sing 131 n n 
C12 H20 D40 sing 132 n n 
C12 H21 D40 sing 133 n n 
C6 H22 D40 sing 134 n n 
C10 H23 D40 sing 135 n n 
N7 H24 D40 sing 136 n n 
#
_atom_sites.entry_id                     6K9H 
_atom_sites.fract_transf_matrix[1][1]    0.015263 
_atom_sites.fract_transf_matrix[1][2]    0.008812 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017624 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008657 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 D40 A 1 501 1 D40 31B . 
D 2 D40 B 1 501 1 D40 31B . 
E 3 HOH A 1 601 7 HOH HOH . 
E 3 HOH A 2 602 9 HOH HOH . 
E 3 HOH A 3 603 27 HOH HOH . 
E 3 HOH A 4 604 2 HOH HOH . 
E 3 HOH A 5 605 6 HOH HOH . 
E 3 HOH A 6 606 5 HOH HOH . 
E 3 HOH A 7 607 18 HOH HOH . 
E 3 HOH A 8 608 3 HOH HOH . 
F 3 HOH B 1 601 24 HOH HOH . 
F 3 HOH B 2 602 17 HOH HOH . 
F 3 HOH B 3 603 19 HOH HOH . 
F 3 HOH B 4 604 22 HOH HOH . 
F 3 HOH B 5 605 20 HOH HOH . 
F 3 HOH B 6 606 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C22 D40 . . . D 2 -16.478 -18.773 -9.391 1 83.36 ? C22 D40 501 B 1 
HETATM 2 C C27 D40 . . . D 2 -16.089 -19.912 -8.695 1 84.38 ? C27 D40 501 B 1 
HETATM 3 C C26 D40 . . . D 2 -16.208 -21.166 -9.27 1 85.54 ? C26 D40 501 B 1 
HETATM 4 C C25 D40 . . . D 2 -16.724 -21.3 -10.54 1 86.53 ? C25 D40 501 B 1 
HETATM 5 C C24 D40 . . . D 2 -17.172 -20.184 -11.218 1 86.18 ? C24 D40 501 B 1 
HETATM 6 C C23 D40 . . . D 2 -17.065 -18.929 -10.641 1 84.64 ? C23 D40 501 B 1 
HETATM 7 C C20 D40 . . . D 2 -20.472 -18.283 -6.995 1 86.28 ? C20 D40 501 B 1 
HETATM 8 C C19 D40 . . . D 2 -20.507 -19.162 -9.332 1 87.71 ? C19 D40 501 B 1 
HETATM 9 C C18 D40 . . . D 2 -21.3 -16.847 -8.885 1 86.55 ? C18 D40 501 B 1 
HETATM 10 C C17 D40 . . . D 2 -20.322 -17.936 -8.465 1 86.07 ? C17 D40 501 B 1 
HETATM 11 C C14 D40 . . . D 2 -18.392 -16.395 -8.546 1 82.97 ? C14 D40 501 B 1 
HETATM 12 C C1 D40 . . . D 2 -15.958 -16.066 -13.38 1 69.03 ? C1 D40 501 B 1 
HETATM 13 C C2 D40 . . . D 2 -14.838 -16.627 -13.976 1 69.07 ? C2 D40 501 B 1 
HETATM 14 C C3 D40 . . . D 2 -13.83 -17.181 -13.2 1 70.1 ? C3 D40 501 B 1 
HETATM 15 C C4 D40 . . . D 2 -13.972 -17.165 -11.816 1 73.14 ? C4 D40 501 B 1 
HETATM 16 C C5 D40 . . . D 2 -15.088 -16.598 -11.209 1 73.6 ? C5 D40 501 B 1 
HETATM 17 C C13 D40 . . . D 2 -14.921 -15.365 -8.96 1 79.39 ? C13 D40 501 B 1 
HETATM 18 C C12 D40 . . . D 2 -16.402 -15.039 -8.797 1 80.82 ? C12 D40 501 B 1 
HETATM 19 C C6 D40 . . . D 2 -16.087 -16.045 -11.999 1 71.37 ? C6 D40 501 B 1 
HETATM 20 C C8 D40 . . . D 2 -13.599 -17.474 -9.595 1 76.47 ? C8 D40 501 B 1 
HETATM 21 C C10 D40 . . . D 2 -16.043 -17.424 -8.857 1 80.94 ? C10 D40 501 B 1 
HETATM 22 C C9 D40 . . . D 2 -14.928 -16.716 -9.712 1 76.92 ? C9 D40 501 B 1 
HETATM 23 N N7 D40 . . . D 2 -13.122 -17.677 -10.844 1 75.28 ? N7 D40 501 B 1 
HETATM 24 N N11 D40 . . . D 2 -17.05 -16.362 -8.731 1 81.43 ? N11 D40 501 B 1 
HETATM 25 O O15 D40 . . . D 2 -19.05 -15.412 -8.326 1 83.99 ? O15 D40 501 B 1 
HETATM 26 O O16 D40 . . . D 2 -18.862 -17.648 -8.585 1 84.74 ? O16 D40 501 B 1 
HETATM 27 O O21 D40 . . . D 2 -13.081 -17.853 -8.557 1 80.9 ? O21 D40 501 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           377 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#