data_6K9T # _model_server_result.job_id '_UJHr1uFsKl0GpvgmDF7Kg' _model_server_result.datetime_utc '2024-10-10 17:14:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6K9T # _exptl.entry_id 6K9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CEFOTAXIME,C3' cleaved,open,bound form" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.98 _cell.angle_gamma 90 _cell.entry_id 6K9T _cell.length_a 133.219 _cell.length_b 60.416 _cell.length_c 56.039 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H15 N5 O5 S2' _chem_comp.formula_weight 397.429 _chem_comp.id CEF _chem_comp.mon_nstd_flag . _chem_comp.name "CEFOTAXIME, C3' cleaved, open, bound form" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 CEF sing 70 n n S1 C6 CEF sing 71 n n C1 C2 CEF sing 72 n n C1 H1 CEF sing 73 n n C1 H2 CEF sing 74 n n C2 C3 CEF doub 75 n n C2 C4 CEF sing 76 n n C3 H3 CEF sing 77 n n C3 H4 CEF sing 78 n n C4 C5 CEF sing 79 n n C4 N1 CEF doub 80 n n C5 O1 CEF doub 81 n n C5 O2 CEF sing 82 n n O2 H5 CEF sing 83 n n N1 C6 CEF sing 84 n n C6 C7 CEF sing 85 n n C6 H6 CEF sing 86 n n C7 C8 CEF sing 87 n n C7 N2 CEF sing 88 n n C7 H7 CEF sing 89 n n C8 O3 CEF doub 90 n n C8 H8 CEF sing 91 n n N2 C9 CEF sing 92 n n N2 H9 CEF sing 93 n n C9 O4 CEF doub 94 n n C9 C10 CEF sing 95 n n C10 N3 CEF doub 96 z n C10 C12 CEF sing 97 n n N3 O5 CEF sing 98 n n O5 C11 CEF sing 99 n n C11 H10 CEF sing 100 n n C11 H11 CEF sing 101 n n C11 H12 CEF sing 102 n n C12 C13 CEF doub 103 n y C12 N5 CEF sing 104 n y C13 S2 CEF sing 105 n y C13 H13 CEF sing 106 n n S2 C14 CEF sing 107 n y C14 N4 CEF sing 108 n n C14 N5 CEF doub 109 n y N4 H14 CEF sing 110 n n N4 H15 CEF sing 111 n n # _atom_sites.entry_id 6K9T _atom_sites.fract_transf_matrix[1][1] 0.007506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00303 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CEF A 1 401 362 CEF PCZ . C 3 HOH A 1 501 114 HOH HOH . C 3 HOH A 2 502 196 HOH HOH . C 3 HOH A 3 503 207 HOH HOH . C 3 HOH A 4 504 203 HOH HOH . C 3 HOH A 5 505 130 HOH HOH . C 3 HOH A 6 506 215 HOH HOH . C 3 HOH A 7 507 164 HOH HOH . C 3 HOH A 8 508 216 HOH HOH . C 3 HOH A 9 509 101 HOH HOH . C 3 HOH A 10 510 125 HOH HOH . C 3 HOH A 11 511 83 HOH HOH . C 3 HOH A 12 512 68 HOH HOH . C 3 HOH A 13 513 132 HOH HOH . C 3 HOH A 14 514 169 HOH HOH . C 3 HOH A 15 515 1 HOH HOH . C 3 HOH A 16 516 152 HOH HOH . C 3 HOH A 17 517 107 HOH HOH . C 3 HOH A 18 518 197 HOH HOH . C 3 HOH A 19 519 122 HOH HOH . C 3 HOH A 20 520 183 HOH HOH . C 3 HOH A 21 521 218 HOH HOH . C 3 HOH A 22 522 72 HOH HOH . C 3 HOH A 23 523 31 HOH HOH . C 3 HOH A 24 524 186 HOH HOH . C 3 HOH A 25 525 211 HOH HOH . C 3 HOH A 26 526 56 HOH HOH . C 3 HOH A 27 527 70 HOH HOH . C 3 HOH A 28 528 226 HOH HOH . C 3 HOH A 29 529 156 HOH HOH . C 3 HOH A 30 530 11 HOH HOH . C 3 HOH A 31 531 15 HOH HOH . C 3 HOH A 32 532 117 HOH HOH . C 3 HOH A 33 533 53 HOH HOH . C 3 HOH A 34 534 20 HOH HOH . C 3 HOH A 35 535 91 HOH HOH . C 3 HOH A 36 536 219 HOH HOH . C 3 HOH A 37 537 32 HOH HOH . C 3 HOH A 38 538 221 HOH HOH . C 3 HOH A 39 539 227 HOH HOH . C 3 HOH A 40 540 4 HOH HOH . C 3 HOH A 41 541 28 HOH HOH . C 3 HOH A 42 542 119 HOH HOH . C 3 HOH A 43 543 30 HOH HOH . C 3 HOH A 44 544 223 HOH HOH . C 3 HOH A 45 545 49 HOH HOH . C 3 HOH A 46 546 35 HOH HOH . C 3 HOH A 47 547 133 HOH HOH . C 3 HOH A 48 548 86 HOH HOH . C 3 HOH A 49 549 24 HOH HOH . C 3 HOH A 50 550 74 HOH HOH . C 3 HOH A 51 551 185 HOH HOH . C 3 HOH A 52 552 147 HOH HOH . C 3 HOH A 53 553 145 HOH HOH . C 3 HOH A 54 554 25 HOH HOH . C 3 HOH A 55 555 3 HOH HOH . C 3 HOH A 56 556 29 HOH HOH . C 3 HOH A 57 557 159 HOH HOH . C 3 HOH A 58 558 192 HOH HOH . C 3 HOH A 59 559 155 HOH HOH . C 3 HOH A 60 560 174 HOH HOH . C 3 HOH A 61 561 82 HOH HOH . C 3 HOH A 62 562 194 HOH HOH . C 3 HOH A 63 563 36 HOH HOH . C 3 HOH A 64 564 103 HOH HOH . C 3 HOH A 65 565 79 HOH HOH . C 3 HOH A 66 566 112 HOH HOH . C 3 HOH A 67 567 129 HOH HOH . C 3 HOH A 68 568 38 HOH HOH . C 3 HOH A 69 569 171 HOH HOH . C 3 HOH A 70 570 181 HOH HOH . C 3 HOH A 71 571 34 HOH HOH . C 3 HOH A 72 572 87 HOH HOH . C 3 HOH A 73 573 96 HOH HOH . C 3 HOH A 74 574 22 HOH HOH . C 3 HOH A 75 575 45 HOH HOH . C 3 HOH A 76 576 212 HOH HOH . C 3 HOH A 77 577 9 HOH HOH . C 3 HOH A 78 578 113 HOH HOH . C 3 HOH A 79 579 193 HOH HOH . C 3 HOH A 80 580 204 HOH HOH . C 3 HOH A 81 581 66 HOH HOH . C 3 HOH A 82 582 67 HOH HOH . C 3 HOH A 83 583 47 HOH HOH . C 3 HOH A 84 584 89 HOH HOH . C 3 HOH A 85 585 136 HOH HOH . C 3 HOH A 86 586 59 HOH HOH . C 3 HOH A 87 587 62 HOH HOH . C 3 HOH A 88 588 90 HOH HOH . C 3 HOH A 89 589 95 HOH HOH . C 3 HOH A 90 590 154 HOH HOH . C 3 HOH A 91 591 102 HOH HOH . C 3 HOH A 92 592 37 HOH HOH . C 3 HOH A 93 593 21 HOH HOH . C 3 HOH A 94 594 40 HOH HOH . C 3 HOH A 95 595 7 HOH HOH . C 3 HOH A 96 596 12 HOH HOH . C 3 HOH A 97 597 231 HOH HOH . C 3 HOH A 98 598 76 HOH HOH . C 3 HOH A 99 599 121 HOH HOH . C 3 HOH A 100 600 214 HOH HOH . C 3 HOH A 101 601 116 HOH HOH . C 3 HOH A 102 602 33 HOH HOH . C 3 HOH A 103 603 88 HOH HOH . C 3 HOH A 104 604 200 HOH HOH . C 3 HOH A 105 605 195 HOH HOH . C 3 HOH A 106 606 23 HOH HOH . C 3 HOH A 107 607 13 HOH HOH . C 3 HOH A 108 608 5 HOH HOH . C 3 HOH A 109 609 158 HOH HOH . C 3 HOH A 110 610 26 HOH HOH . C 3 HOH A 111 611 43 HOH HOH . C 3 HOH A 112 612 141 HOH HOH . C 3 HOH A 113 613 149 HOH HOH . C 3 HOH A 114 614 60 HOH HOH . C 3 HOH A 115 615 63 HOH HOH . C 3 HOH A 116 616 209 HOH HOH . C 3 HOH A 117 617 61 HOH HOH . C 3 HOH A 118 618 143 HOH HOH . C 3 HOH A 119 619 16 HOH HOH . C 3 HOH A 120 620 109 HOH HOH . C 3 HOH A 121 621 123 HOH HOH . C 3 HOH A 122 622 111 HOH HOH . C 3 HOH A 123 623 78 HOH HOH . C 3 HOH A 124 624 205 HOH HOH . C 3 HOH A 125 625 115 HOH HOH . C 3 HOH A 126 626 14 HOH HOH . C 3 HOH A 127 627 198 HOH HOH . C 3 HOH A 128 628 10 HOH HOH . C 3 HOH A 129 629 2 HOH HOH . C 3 HOH A 130 630 77 HOH HOH . C 3 HOH A 131 631 217 HOH HOH . C 3 HOH A 132 632 58 HOH HOH . C 3 HOH A 133 633 234 HOH HOH . C 3 HOH A 134 634 51 HOH HOH . C 3 HOH A 135 635 19 HOH HOH . C 3 HOH A 136 636 71 HOH HOH . C 3 HOH A 137 637 44 HOH HOH . C 3 HOH A 138 638 142 HOH HOH . C 3 HOH A 139 639 134 HOH HOH . C 3 HOH A 140 640 73 HOH HOH . C 3 HOH A 141 641 84 HOH HOH . C 3 HOH A 142 642 208 HOH HOH . C 3 HOH A 143 643 140 HOH HOH . C 3 HOH A 144 644 213 HOH HOH . C 3 HOH A 145 645 41 HOH HOH . C 3 HOH A 146 646 52 HOH HOH . C 3 HOH A 147 647 98 HOH HOH . C 3 HOH A 148 648 57 HOH HOH . C 3 HOH A 149 649 105 HOH HOH . C 3 HOH A 150 650 168 HOH HOH . C 3 HOH A 151 651 189 HOH HOH . C 3 HOH A 152 652 179 HOH HOH . C 3 HOH A 153 653 153 HOH HOH . C 3 HOH A 154 654 85 HOH HOH . C 3 HOH A 155 655 104 HOH HOH . C 3 HOH A 156 656 108 HOH HOH . C 3 HOH A 157 657 167 HOH HOH . C 3 HOH A 158 658 126 HOH HOH . C 3 HOH A 159 659 99 HOH HOH . C 3 HOH A 160 660 187 HOH HOH . C 3 HOH A 161 661 146 HOH HOH . C 3 HOH A 162 662 148 HOH HOH . C 3 HOH A 163 663 65 HOH HOH . C 3 HOH A 164 664 18 HOH HOH . C 3 HOH A 165 665 75 HOH HOH . C 3 HOH A 166 666 97 HOH HOH . C 3 HOH A 167 667 110 HOH HOH . C 3 HOH A 168 668 17 HOH HOH . C 3 HOH A 169 669 93 HOH HOH . C 3 HOH A 170 670 106 HOH HOH . C 3 HOH A 171 671 137 HOH HOH . C 3 HOH A 172 672 55 HOH HOH . C 3 HOH A 173 673 144 HOH HOH . C 3 HOH A 174 674 39 HOH HOH . C 3 HOH A 175 675 210 HOH HOH . C 3 HOH A 176 676 161 HOH HOH . C 3 HOH A 177 677 139 HOH HOH . C 3 HOH A 178 678 6 HOH HOH . C 3 HOH A 179 679 160 HOH HOH . C 3 HOH A 180 680 166 HOH HOH . C 3 HOH A 181 681 81 HOH HOH . C 3 HOH A 182 682 69 HOH HOH . C 3 HOH A 183 683 92 HOH HOH . C 3 HOH A 184 684 64 HOH HOH . C 3 HOH A 185 685 42 HOH HOH . C 3 HOH A 186 686 118 HOH HOH . C 3 HOH A 187 687 120 HOH HOH . C 3 HOH A 188 688 8 HOH HOH . C 3 HOH A 189 689 46 HOH HOH . C 3 HOH A 190 690 172 HOH HOH . C 3 HOH A 191 691 157 HOH HOH . C 3 HOH A 192 692 54 HOH HOH . C 3 HOH A 193 693 228 HOH HOH . C 3 HOH A 194 694 127 HOH HOH . C 3 HOH A 195 695 100 HOH HOH . C 3 HOH A 196 696 80 HOH HOH . C 3 HOH A 197 697 229 HOH HOH . C 3 HOH A 198 698 177 HOH HOH . C 3 HOH A 199 699 151 HOH HOH . C 3 HOH A 200 700 178 HOH HOH . C 3 HOH A 201 701 165 HOH HOH . C 3 HOH A 202 702 191 HOH HOH . C 3 HOH A 203 703 224 HOH HOH . C 3 HOH A 204 704 94 HOH HOH . C 3 HOH A 205 705 233 HOH HOH . C 3 HOH A 206 706 180 HOH HOH . C 3 HOH A 207 707 220 HOH HOH . C 3 HOH A 208 708 50 HOH HOH . C 3 HOH A 209 709 175 HOH HOH . C 3 HOH A 210 710 232 HOH HOH . C 3 HOH A 211 711 163 HOH HOH . C 3 HOH A 212 712 202 HOH HOH . C 3 HOH A 213 713 188 HOH HOH . C 3 HOH A 214 714 135 HOH HOH . C 3 HOH A 215 715 124 HOH HOH . C 3 HOH A 216 716 184 HOH HOH . C 3 HOH A 217 717 48 HOH HOH . C 3 HOH A 218 718 138 HOH HOH . C 3 HOH A 219 719 199 HOH HOH . C 3 HOH A 220 720 230 HOH HOH . C 3 HOH A 221 721 170 HOH HOH . C 3 HOH A 222 722 162 HOH HOH . C 3 HOH A 223 723 222 HOH HOH . C 3 HOH A 224 724 190 HOH HOH . C 3 HOH A 225 725 27 HOH HOH . C 3 HOH A 226 726 206 HOH HOH . C 3 HOH A 227 727 182 HOH HOH . C 3 HOH A 228 728 173 HOH HOH . C 3 HOH A 229 729 128 HOH HOH . C 3 HOH A 230 730 201 HOH HOH . C 3 HOH A 231 731 131 HOH HOH . C 3 HOH A 232 732 150 HOH HOH . C 3 HOH A 233 733 225 HOH HOH . C 3 HOH A 234 734 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 CEF . . . B 2 25.511 -8.192 3.652 1 18.82 ? S1 CEF 401 A 1 HETATM 2 C C1 CEF . . . B 2 27.011 -7.979 4.414 1 21.57 ? C1 CEF 401 A 1 HETATM 3 C C2 CEF . . . B 2 27.907 -6.837 3.849 1 24.14 ? C2 CEF 401 A 1 HETATM 4 C C3 CEF . . . B 2 29.258 -6.65 4.085 1 28.82 ? C3 CEF 401 A 1 HETATM 5 C C4 CEF . . . B 2 26.991 -5.615 3.257 1 19.77 ? C4 CEF 401 A 1 HETATM 6 C C5 CEF . . . B 2 27.568 -4.333 2.72 1 22.23 ? C5 CEF 401 A 1 HETATM 7 O O1 CEF . . . B 2 28.616 -4.302 2 1 28.68 ? O1 CEF 401 A 1 HETATM 8 O O2 CEF . . . B 2 26.954 -3.292 3.059 1 18.68 ? O2 CEF 401 A 1 HETATM 9 N N1 CEF . . . B 2 25.525 -5.637 3.28 1 18.8 ? N1 CEF 401 A 1 HETATM 10 C C6 CEF . . . B 2 24.834 -6.701 3.962 1 16.93 ? C6 CEF 401 A 1 HETATM 11 C C7 CEF . . . B 2 23.357 -6.54 3.468 1 15.2 ? C7 CEF 401 A 1 HETATM 12 C C8 CEF . . . B 2 22.98 -5.242 4.055 1 15.45 ? C8 CEF 401 A 1 HETATM 13 O O3 CEF . . . B 2 23.022 -4.193 3.408 1 12.64 ? O3 CEF 401 A 1 HETATM 14 N N2 CEF . . . B 2 23.307 -6.439 2.055 1 15.06 ? N2 CEF 401 A 1 HETATM 15 C C9 CEF . . . B 2 23.061 -7.617 1.335 1 19.62 ? C9 CEF 401 A 1 HETATM 16 O O4 CEF . . . B 2 22.852 -8.656 1.937 1 18.96 ? O4 CEF 401 A 1 HETATM 17 C C10 CEF . . . B 2 23.114 -7.509 -0.157 1 22.78 ? C10 CEF 401 A 1 HETATM 18 N N3 CEF . . . B 2 22.129 -7.733 -0.96 1 28.8 ? N3 CEF 401 A 1 HETATM 19 O O5 CEF . . . B 2 20.937 -8.134 -0.508 1 31.96 ? O5 CEF 401 A 1 HETATM 20 C C11 CEF . . . B 2 20.051 -7.966 -1.619 1 27.84 ? C11 CEF 401 A 1 HETATM 21 C C12 CEF . . . B 2 24.439 -7.019 -0.682 1 21.6 ? C12 CEF 401 A 1 HETATM 22 C C13 CEF . . . B 2 25.578 -6.506 0.049 1 23.74 ? C13 CEF 401 A 1 HETATM 23 S S2 CEF . . . B 2 26.673 -6.138 -1.015 1 29.51 ? S2 CEF 401 A 1 HETATM 24 C C14 CEF . . . B 2 26.01 -6.469 -2.409 1 27.56 ? C14 CEF 401 A 1 HETATM 25 N N4 CEF . . . B 2 26.62 -6.293 -3.666 1 32.04 ? N4 CEF 401 A 1 HETATM 26 N N5 CEF . . . B 2 24.701 -6.991 -2.219 1 27.47 ? N5 CEF 401 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #