data_6KAR # _model_server_result.job_id y4NPeKUVlVjXJPheotSbqQ _model_server_result.datetime_utc '2025-04-15 13:26:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kar # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6KAR # _exptl.entry_id 6KAR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KAR _cell.length_a 53.645 _cell.length_b 53.645 _cell.length_c 192.708 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KAR _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 53.645 -53.645 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 C FE HEM . A HEM 201 1_555 D C CMO . A CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.741 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc4 E FE HEM . B HEM 201 1_555 F C CMO . B CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.756 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 6KAR _atom_sites.fract_transf_matrix[1][1] 0.018641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 201 142 HEM HEM . D 4 CMO A 1 202 143 CMO CMO . E 3 HEM B 1 201 147 HEM HEM . F 4 CMO B 1 202 148 CMO CMO . G 5 HOH A 1 301 21 HOH HOH . G 5 HOH A 2 302 60 HOH HOH . G 5 HOH A 3 303 27 HOH HOH . G 5 HOH A 4 304 31 HOH HOH . G 5 HOH A 5 305 47 HOH HOH . G 5 HOH A 6 306 51 HOH HOH . G 5 HOH A 7 307 3 HOH HOH . G 5 HOH A 8 308 38 HOH HOH . G 5 HOH A 9 309 4 HOH HOH . G 5 HOH A 10 310 22 HOH HOH . G 5 HOH A 11 311 35 HOH HOH . G 5 HOH A 12 312 26 HOH HOH . G 5 HOH A 13 313 11 HOH HOH . G 5 HOH A 14 314 56 HOH HOH . G 5 HOH A 15 315 12 HOH HOH . G 5 HOH A 16 316 13 HOH HOH . G 5 HOH A 17 317 29 HOH HOH . G 5 HOH A 18 318 17 HOH HOH . G 5 HOH A 19 319 2 HOH HOH . G 5 HOH A 20 320 39 HOH HOH . G 5 HOH A 21 321 45 HOH HOH . G 5 HOH A 22 322 62 HOH HOH . G 5 HOH A 23 323 19 HOH HOH . G 5 HOH A 24 324 1 HOH HOH . G 5 HOH A 25 325 33 HOH HOH . G 5 HOH A 26 326 42 HOH HOH . G 5 HOH A 27 327 44 HOH HOH . G 5 HOH A 28 328 7 HOH HOH . G 5 HOH A 29 329 24 HOH HOH . G 5 HOH A 30 330 61 HOH HOH . G 5 HOH A 31 331 20 HOH HOH . G 5 HOH A 32 332 55 HOH HOH . G 5 HOH A 33 333 37 HOH HOH . G 5 HOH A 34 334 5 HOH HOH . G 5 HOH A 35 335 9 HOH HOH . G 5 HOH A 36 336 8 HOH HOH . G 5 HOH A 37 337 34 HOH HOH . G 5 HOH A 38 338 28 HOH HOH . H 5 HOH B 1 301 49 HOH HOH . H 5 HOH B 2 302 48 HOH HOH . H 5 HOH B 3 303 58 HOH HOH . H 5 HOH B 4 304 6 HOH HOH . H 5 HOH B 5 305 52 HOH HOH . H 5 HOH B 6 306 16 HOH HOH . H 5 HOH B 7 307 18 HOH HOH . H 5 HOH B 8 308 32 HOH HOH . H 5 HOH B 9 309 40 HOH HOH . H 5 HOH B 10 310 23 HOH HOH . H 5 HOH B 11 311 15 HOH HOH . H 5 HOH B 12 312 46 HOH HOH . H 5 HOH B 13 313 30 HOH HOH . H 5 HOH B 14 314 10 HOH HOH . H 5 HOH B 15 315 43 HOH HOH . H 5 HOH B 16 316 54 HOH HOH . H 5 HOH B 17 317 57 HOH HOH . H 5 HOH B 18 318 36 HOH HOH . H 5 HOH B 19 319 25 HOH HOH . H 5 HOH B 20 320 50 HOH HOH . H 5 HOH B 21 321 41 HOH HOH . H 5 HOH B 22 322 53 HOH HOH . H 5 HOH B 23 323 14 HOH HOH . H 5 HOH B 24 324 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 43.12 -25.395 17.235 1 22.47 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . C 3 41.083 -21.021 16.322 1 17.9 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . C 3 37.815 -23.21 13.33 1 18.11 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . C 3 39.589 -27.679 14.652 1 20.41 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . C 3 42.829 -24.043 17.252 1 18.48 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . C 3 43.513 -23.031 18.03 1 22.75 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . C 3 42.961 -21.835 17.778 1 20.27 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . C 3 41.888 -22.029 16.827 1 18.72 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . C 3 43.342 -20.455 18.373 1 19.06 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . C 3 44.695 -23.343 18.97 1 22.63 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . C 3 45.998 -23.005 18.26 1 33.09 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . C 3 47.151 -23.448 19.12 1 56 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . C 3 48.305 -23.417 18.625 1 55.38 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . C 3 46.914 -23.837 20.292 1 61.17 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . C 3 40.03 -21.265 15.448 1 15.81 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . C 3 39.155 -20.263 14.906 1 18.97 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . C 3 38.266 -20.848 14.082 1 15.76 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . C 3 38.542 -22.27 14.068 1 14.67 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . C 3 39.301 -18.775 15.261 1 22.5 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . C 3 37.105 -20.248 13.261 1 20.36 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . C 3 36.509 -19.085 13.555 1 31.68 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . C 3 37.995 -24.589 13.529 1 17.45 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . C 3 37.129 -25.623 12.995 1 15.59 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . C 3 37.633 -26.838 13.343 1 17.16 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . C 3 38.812 -26.643 14.133 1 15.29 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . C 3 35.874 -25.304 12.158 1 22.26 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . C 3 37.1 -28.263 13.089 1 18.22 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . C 3 35.791 -28.52 13.035 1 19.77 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . C 3 40.687 -27.415 15.466 1 18.71 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . C 3 41.516 -28.408 16.094 1 20.84 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . C 3 42.491 -27.803 16.797 1 20.4 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . C 3 42.317 -26.37 16.655 1 20.91 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . C 3 41.281 -29.922 15.94 1 20.09 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . C 3 43.606 -28.468 17.636 1 24.63 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . C 3 43.06 -28.893 18.993 1 27.2 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . C 3 44.148 -29.592 19.776 1 38.71 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . C 3 44.839 -30.471 19.205 1 47.01 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . C 3 44.314 -29.28 20.98 1 50.32 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . C 3 41.827 -23.393 16.55 1 17.49 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . C 3 39.62 -22.501 14.924 1 14.89 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . C 3 39.014 -25.261 14.232 1 16.53 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . C 3 41.209 -26.175 15.838 1 18.3 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . C 3 40.385 -24.331 15.448 1 17.89 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 484 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #