data_6KAX # _model_server_result.job_id 2BtlVxEWJN2k5MmzI34o7w _model_server_result.datetime_utc '2024-10-31 06:17:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6KAX # _exptl.entry_id 6KAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.53 _cell.angle_gamma 90 _cell.entry_id 6KAX _cell.length_a 44.632 _cell.length_b 61.535 _cell.length_c 52.996 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6KAX _atom_sites.fract_transf_matrix[1][1] 0.022405 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006648 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019683 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 PLM A 1 502 1 PLM PLM . D 4 HOH A 1 601 175 HOH HOH . D 4 HOH A 2 602 49 HOH HOH . D 4 HOH A 3 603 184 HOH HOH . D 4 HOH A 4 604 41 HOH HOH . D 4 HOH A 5 605 169 HOH HOH . D 4 HOH A 6 606 78 HOH HOH . D 4 HOH A 7 607 162 HOH HOH . D 4 HOH A 8 608 160 HOH HOH . D 4 HOH A 9 609 136 HOH HOH . D 4 HOH A 10 610 192 HOH HOH . D 4 HOH A 11 611 99 HOH HOH . D 4 HOH A 12 612 154 HOH HOH . D 4 HOH A 13 613 68 HOH HOH . D 4 HOH A 14 614 2 HOH HOH . D 4 HOH A 15 615 61 HOH HOH . D 4 HOH A 16 616 88 HOH HOH . D 4 HOH A 17 617 193 HOH HOH . D 4 HOH A 18 618 134 HOH HOH . D 4 HOH A 19 619 103 HOH HOH . D 4 HOH A 20 620 101 HOH HOH . D 4 HOH A 21 621 142 HOH HOH . D 4 HOH A 22 622 100 HOH HOH . D 4 HOH A 23 623 67 HOH HOH . D 4 HOH A 24 624 38 HOH HOH . D 4 HOH A 25 625 121 HOH HOH . D 4 HOH A 26 626 22 HOH HOH . D 4 HOH A 27 627 90 HOH HOH . D 4 HOH A 28 628 47 HOH HOH . D 4 HOH A 29 629 146 HOH HOH . D 4 HOH A 30 630 65 HOH HOH . D 4 HOH A 31 631 174 HOH HOH . D 4 HOH A 32 632 73 HOH HOH . D 4 HOH A 33 633 12 HOH HOH . D 4 HOH A 34 634 141 HOH HOH . D 4 HOH A 35 635 4 HOH HOH . D 4 HOH A 36 636 50 HOH HOH . D 4 HOH A 37 637 52 HOH HOH . D 4 HOH A 38 638 58 HOH HOH . D 4 HOH A 39 639 122 HOH HOH . D 4 HOH A 40 640 152 HOH HOH . D 4 HOH A 41 641 132 HOH HOH . D 4 HOH A 42 642 112 HOH HOH . D 4 HOH A 43 643 109 HOH HOH . D 4 HOH A 44 644 43 HOH HOH . D 4 HOH A 45 645 72 HOH HOH . D 4 HOH A 46 646 147 HOH HOH . D 4 HOH A 47 647 113 HOH HOH . D 4 HOH A 48 648 82 HOH HOH . D 4 HOH A 49 649 124 HOH HOH . D 4 HOH A 50 650 21 HOH HOH . D 4 HOH A 51 651 95 HOH HOH . D 4 HOH A 52 652 28 HOH HOH . D 4 HOH A 53 653 137 HOH HOH . D 4 HOH A 54 654 48 HOH HOH . D 4 HOH A 55 655 172 HOH HOH . D 4 HOH A 56 656 83 HOH HOH . D 4 HOH A 57 657 189 HOH HOH . D 4 HOH A 58 658 42 HOH HOH . D 4 HOH A 59 659 151 HOH HOH . D 4 HOH A 60 660 40 HOH HOH . D 4 HOH A 61 661 39 HOH HOH . D 4 HOH A 62 662 46 HOH HOH . D 4 HOH A 63 663 63 HOH HOH . D 4 HOH A 64 664 32 HOH HOH . D 4 HOH A 65 665 105 HOH HOH . D 4 HOH A 66 666 6 HOH HOH . D 4 HOH A 67 667 16 HOH HOH . D 4 HOH A 68 668 5 HOH HOH . D 4 HOH A 69 669 129 HOH HOH . D 4 HOH A 70 670 1 HOH HOH . D 4 HOH A 71 671 17 HOH HOH . D 4 HOH A 72 672 45 HOH HOH . D 4 HOH A 73 673 9 HOH HOH . D 4 HOH A 74 674 170 HOH HOH . D 4 HOH A 75 675 25 HOH HOH . D 4 HOH A 76 676 26 HOH HOH . D 4 HOH A 77 677 20 HOH HOH . D 4 HOH A 78 678 79 HOH HOH . D 4 HOH A 79 679 76 HOH HOH . D 4 HOH A 80 680 62 HOH HOH . D 4 HOH A 81 681 29 HOH HOH . D 4 HOH A 82 682 104 HOH HOH . D 4 HOH A 83 683 18 HOH HOH . D 4 HOH A 84 684 148 HOH HOH . D 4 HOH A 85 685 81 HOH HOH . D 4 HOH A 86 686 30 HOH HOH . D 4 HOH A 87 687 149 HOH HOH . D 4 HOH A 88 688 10 HOH HOH . D 4 HOH A 89 689 51 HOH HOH . D 4 HOH A 90 690 96 HOH HOH . D 4 HOH A 91 691 177 HOH HOH . D 4 HOH A 92 692 107 HOH HOH . D 4 HOH A 93 693 179 HOH HOH . D 4 HOH A 94 694 143 HOH HOH . D 4 HOH A 95 695 53 HOH HOH . D 4 HOH A 96 696 161 HOH HOH . D 4 HOH A 97 697 23 HOH HOH . D 4 HOH A 98 698 8 HOH HOH . D 4 HOH A 99 699 15 HOH HOH . D 4 HOH A 100 700 120 HOH HOH . D 4 HOH A 101 701 57 HOH HOH . D 4 HOH A 102 702 98 HOH HOH . D 4 HOH A 103 703 163 HOH HOH . D 4 HOH A 104 704 86 HOH HOH . D 4 HOH A 105 705 118 HOH HOH . D 4 HOH A 106 706 3 HOH HOH . D 4 HOH A 107 707 7 HOH HOH . D 4 HOH A 108 708 74 HOH HOH . D 4 HOH A 109 709 156 HOH HOH . D 4 HOH A 110 710 36 HOH HOH . D 4 HOH A 111 711 145 HOH HOH . D 4 HOH A 112 712 130 HOH HOH . D 4 HOH A 113 713 64 HOH HOH . D 4 HOH A 114 714 19 HOH HOH . D 4 HOH A 115 715 139 HOH HOH . D 4 HOH A 116 716 106 HOH HOH . D 4 HOH A 117 717 44 HOH HOH . D 4 HOH A 118 718 14 HOH HOH . D 4 HOH A 119 719 13 HOH HOH . D 4 HOH A 120 720 24 HOH HOH . D 4 HOH A 121 721 164 HOH HOH . D 4 HOH A 122 722 85 HOH HOH . D 4 HOH A 123 723 87 HOH HOH . D 4 HOH A 124 724 84 HOH HOH . D 4 HOH A 125 725 119 HOH HOH . D 4 HOH A 126 726 188 HOH HOH . D 4 HOH A 127 727 37 HOH HOH . D 4 HOH A 128 728 158 HOH HOH . D 4 HOH A 129 729 35 HOH HOH . D 4 HOH A 130 730 55 HOH HOH . D 4 HOH A 131 731 115 HOH HOH . D 4 HOH A 132 732 110 HOH HOH . D 4 HOH A 133 733 11 HOH HOH . D 4 HOH A 134 734 89 HOH HOH . D 4 HOH A 135 735 165 HOH HOH . D 4 HOH A 136 736 69 HOH HOH . D 4 HOH A 137 737 93 HOH HOH . D 4 HOH A 138 738 71 HOH HOH . D 4 HOH A 139 739 186 HOH HOH . D 4 HOH A 140 740 191 HOH HOH . D 4 HOH A 141 741 56 HOH HOH . D 4 HOH A 142 742 153 HOH HOH . D 4 HOH A 143 743 133 HOH HOH . D 4 HOH A 144 744 33 HOH HOH . D 4 HOH A 145 745 187 HOH HOH . D 4 HOH A 146 746 34 HOH HOH . D 4 HOH A 147 747 176 HOH HOH . D 4 HOH A 148 748 75 HOH HOH . D 4 HOH A 149 749 77 HOH HOH . D 4 HOH A 150 750 59 HOH HOH . D 4 HOH A 151 751 91 HOH HOH . D 4 HOH A 152 752 173 HOH HOH . D 4 HOH A 153 753 190 HOH HOH . D 4 HOH A 154 754 60 HOH HOH . D 4 HOH A 155 755 138 HOH HOH . D 4 HOH A 156 756 182 HOH HOH . D 4 HOH A 157 757 114 HOH HOH . D 4 HOH A 158 758 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -4.955 0.977 -8.245 1 23.91 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 -4.552 -0.075 -9.08 1 20.8 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 -4.978 0.513 -6.797 1 21.63 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 -5.39 1.6 -6.005 1 17.91 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 -5.927 -0.678 -6.607 1 27.13 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 -7.184 -0.383 -7.159 1 29.38 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . B 2 -4.333 1.716 -8.336 1 28.69 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . B 2 -5.843 1.271 -8.503 1 28.69 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . B 2 -5.033 -0.759 -8.926 1 24.96 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . B 2 -4.082 0.251 -6.534 1 25.96 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . B 2 -5.563 1.328 -5.219 1 21.5 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . B 2 -6.026 -0.862 -5.66 1 32.56 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . B 2 -5.556 -1.458 -7.05 1 32.56 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . B 2 -7.305 0.459 -7.155 1 35.25 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #