data_6KAY # _model_server_result.job_id uOUwlyw_iFVw3m6huRX8Ag _model_server_result.datetime_utc '2024-11-23 12:49:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kay # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6KAY # _exptl.entry_id 6KAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.71 _cell.angle_gamma 90 _cell.entry_id 6KAY _cell.length_a 44.71 _cell.length_b 62.14 _cell.length_c 53.127 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 212 n n C1 C2 GOL sing 213 n n C1 H11 GOL sing 214 n n C1 H12 GOL sing 215 n n O1 HO1 GOL sing 216 n n C2 O2 GOL sing 217 n n C2 C3 GOL sing 218 n n C2 H2 GOL sing 219 n n O2 HO2 GOL sing 220 n n C3 O3 GOL sing 221 n n C3 H31 GOL sing 222 n n C3 H32 GOL sing 223 n n O3 HO3 GOL sing 224 n n # _atom_sites.entry_id 6KAY _atom_sites.fract_transf_matrix[1][1] 0.022366 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006714 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2VN A 1 501 1 2VN G77 . C 3 GOL A 1 502 1 GOL GOL . D 4 HOH A 1 601 25 HOH HOH . D 4 HOH A 2 602 73 HOH HOH . D 4 HOH A 3 603 13 HOH HOH . D 4 HOH A 4 604 44 HOH HOH . D 4 HOH A 5 605 21 HOH HOH . D 4 HOH A 6 606 31 HOH HOH . D 4 HOH A 7 607 23 HOH HOH . D 4 HOH A 8 608 29 HOH HOH . D 4 HOH A 9 609 75 HOH HOH . D 4 HOH A 10 610 56 HOH HOH . D 4 HOH A 11 611 34 HOH HOH . D 4 HOH A 12 612 48 HOH HOH . D 4 HOH A 13 613 46 HOH HOH . D 4 HOH A 14 614 17 HOH HOH . D 4 HOH A 15 615 4 HOH HOH . D 4 HOH A 16 616 27 HOH HOH . D 4 HOH A 17 617 10 HOH HOH . D 4 HOH A 18 618 77 HOH HOH . D 4 HOH A 19 619 6 HOH HOH . D 4 HOH A 20 620 43 HOH HOH . D 4 HOH A 21 621 1 HOH HOH . D 4 HOH A 22 622 22 HOH HOH . D 4 HOH A 23 623 39 HOH HOH . D 4 HOH A 24 624 24 HOH HOH . D 4 HOH A 25 625 66 HOH HOH . D 4 HOH A 26 626 58 HOH HOH . D 4 HOH A 27 627 63 HOH HOH . D 4 HOH A 28 628 38 HOH HOH . D 4 HOH A 29 629 42 HOH HOH . D 4 HOH A 30 630 61 HOH HOH . D 4 HOH A 31 631 45 HOH HOH . D 4 HOH A 32 632 16 HOH HOH . D 4 HOH A 33 633 47 HOH HOH . D 4 HOH A 34 634 49 HOH HOH . D 4 HOH A 35 635 2 HOH HOH . D 4 HOH A 36 636 40 HOH HOH . D 4 HOH A 37 637 33 HOH HOH . D 4 HOH A 38 638 32 HOH HOH . D 4 HOH A 39 639 57 HOH HOH . D 4 HOH A 40 640 9 HOH HOH . D 4 HOH A 41 641 37 HOH HOH . D 4 HOH A 42 642 15 HOH HOH . D 4 HOH A 43 643 7 HOH HOH . D 4 HOH A 44 644 14 HOH HOH . D 4 HOH A 45 645 3 HOH HOH . D 4 HOH A 46 646 28 HOH HOH . D 4 HOH A 47 647 20 HOH HOH . D 4 HOH A 48 648 5 HOH HOH . D 4 HOH A 49 649 67 HOH HOH . D 4 HOH A 50 650 30 HOH HOH . D 4 HOH A 51 651 41 HOH HOH . D 4 HOH A 52 652 12 HOH HOH . D 4 HOH A 53 653 26 HOH HOH . D 4 HOH A 54 654 78 HOH HOH . D 4 HOH A 55 655 35 HOH HOH . D 4 HOH A 56 656 8 HOH HOH . D 4 HOH A 57 657 54 HOH HOH . D 4 HOH A 58 658 60 HOH HOH . D 4 HOH A 59 659 11 HOH HOH . D 4 HOH A 60 660 62 HOH HOH . D 4 HOH A 61 661 19 HOH HOH . D 4 HOH A 62 662 36 HOH HOH . D 4 HOH A 63 663 64 HOH HOH . D 4 HOH A 64 664 50 HOH HOH . D 4 HOH A 65 665 69 HOH HOH . D 4 HOH A 66 666 70 HOH HOH . D 4 HOH A 67 667 72 HOH HOH . D 4 HOH A 68 668 59 HOH HOH . D 4 HOH A 69 669 18 HOH HOH . D 4 HOH A 70 670 74 HOH HOH . D 4 HOH A 71 671 68 HOH HOH . D 4 HOH A 72 672 71 HOH HOH . D 4 HOH A 73 673 52 HOH HOH . D 4 HOH A 74 674 55 HOH HOH . D 4 HOH A 75 675 76 HOH HOH . D 4 HOH A 76 676 51 HOH HOH . D 4 HOH A 77 677 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -5.286 0.073 -6.212 1 38.64 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . C 3 -6.427 -0.619 -6.648 1 41.15 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . C 3 -4.724 0.951 -7.333 1 35.73 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . C 3 -4.657 0.226 -8.534 1 37.01 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . C 3 -5.661 2.141 -7.468 1 38.59 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . C 3 -5.462 2.972 -6.354 1 42.87 ? O3 GOL 502 A 1 HETATM 7 H H11 GOL . . . C 3 -5.522 0.633 -5.456 1 46.37 ? H11 GOL 502 A 1 HETATM 8 H H12 GOL . . . C 3 -4.61 -0.566 -5.938 1 46.37 ? H12 GOL 502 A 1 HETATM 9 H HO1 GOL . . . C 3 -6.2 -1.387 -6.935 1 49.37 ? HO1 GOL 502 A 1 HETATM 10 H H2 GOL . . . C 3 -3.838 1.261 -7.09 1 42.87 ? H2 GOL 502 A 1 HETATM 11 H HO2 GOL . . . C 3 -4.253 -0.51 -8.398 1 44.41 ? HO2 GOL 502 A 1 HETATM 12 H H31 GOL . . . C 3 -6.581 1.834 -7.488 1 46.31 ? H31 GOL 502 A 1 HETATM 13 H H32 GOL . . . C 3 -5.459 2.628 -8.282 1 46.31 ? H32 GOL 502 A 1 HETATM 14 H HO3 GOL . . . C 3 -5.328 3.769 -6.616 1 51.45 ? HO3 GOL 502 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #