data_6KAZ # _model_server_result.job_id w5WI72vYmM3AXYIyt_6BUQ _model_server_result.datetime_utc '2024-11-27 20:57:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kaz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6KAZ # _exptl.entry_id 6KAZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.8 _cell.angle_gamma 90 _cell.entry_id 6KAZ _cell.length_a 44.875 _cell.length_b 61.208 _cell.length_c 53.214 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KAZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6KAZ _atom_sites.fract_transf_matrix[1][1] 0.022284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006728 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016338 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 P7F A 1 502 1 P7F P7F . D 4 HOH A 1 601 132 HOH HOH . D 4 HOH A 2 602 102 HOH HOH . D 4 HOH A 3 603 140 HOH HOH . D 4 HOH A 4 604 83 HOH HOH . D 4 HOH A 5 605 111 HOH HOH . D 4 HOH A 6 606 21 HOH HOH . D 4 HOH A 7 607 179 HOH HOH . D 4 HOH A 8 608 116 HOH HOH . D 4 HOH A 9 609 113 HOH HOH . D 4 HOH A 10 610 49 HOH HOH . D 4 HOH A 11 611 186 HOH HOH . D 4 HOH A 12 612 40 HOH HOH . D 4 HOH A 13 613 73 HOH HOH . D 4 HOH A 14 614 163 HOH HOH . D 4 HOH A 15 615 131 HOH HOH . D 4 HOH A 16 616 118 HOH HOH . D 4 HOH A 17 617 99 HOH HOH . D 4 HOH A 18 618 86 HOH HOH . D 4 HOH A 19 619 157 HOH HOH . D 4 HOH A 20 620 112 HOH HOH . D 4 HOH A 21 621 1 HOH HOH . D 4 HOH A 22 622 29 HOH HOH . D 4 HOH A 23 623 39 HOH HOH . D 4 HOH A 24 624 47 HOH HOH . D 4 HOH A 25 625 52 HOH HOH . D 4 HOH A 26 626 25 HOH HOH . D 4 HOH A 27 627 129 HOH HOH . D 4 HOH A 28 628 42 HOH HOH . D 4 HOH A 29 629 12 HOH HOH . D 4 HOH A 30 630 105 HOH HOH . D 4 HOH A 31 631 183 HOH HOH . D 4 HOH A 32 632 75 HOH HOH . D 4 HOH A 33 633 18 HOH HOH . D 4 HOH A 34 634 78 HOH HOH . D 4 HOH A 35 635 72 HOH HOH . D 4 HOH A 36 636 28 HOH HOH . D 4 HOH A 37 637 128 HOH HOH . D 4 HOH A 38 638 95 HOH HOH . D 4 HOH A 39 639 67 HOH HOH . D 4 HOH A 40 640 63 HOH HOH . D 4 HOH A 41 641 153 HOH HOH . D 4 HOH A 42 642 187 HOH HOH . D 4 HOH A 43 643 37 HOH HOH . D 4 HOH A 44 644 126 HOH HOH . D 4 HOH A 45 645 117 HOH HOH . D 4 HOH A 46 646 16 HOH HOH . D 4 HOH A 47 647 94 HOH HOH . D 4 HOH A 48 648 81 HOH HOH . D 4 HOH A 49 649 184 HOH HOH . D 4 HOH A 50 650 41 HOH HOH . D 4 HOH A 51 651 71 HOH HOH . D 4 HOH A 52 652 89 HOH HOH . D 4 HOH A 53 653 130 HOH HOH . D 4 HOH A 54 654 107 HOH HOH . D 4 HOH A 55 655 168 HOH HOH . D 4 HOH A 56 656 14 HOH HOH . D 4 HOH A 57 657 4 HOH HOH . D 4 HOH A 58 658 144 HOH HOH . D 4 HOH A 59 659 148 HOH HOH . D 4 HOH A 60 660 53 HOH HOH . D 4 HOH A 61 661 45 HOH HOH . D 4 HOH A 62 662 180 HOH HOH . D 4 HOH A 63 663 32 HOH HOH . D 4 HOH A 64 664 114 HOH HOH . D 4 HOH A 65 665 3 HOH HOH . D 4 HOH A 66 666 100 HOH HOH . D 4 HOH A 67 667 161 HOH HOH . D 4 HOH A 68 668 96 HOH HOH . D 4 HOH A 69 669 62 HOH HOH . D 4 HOH A 70 670 22 HOH HOH . D 4 HOH A 71 671 57 HOH HOH . D 4 HOH A 72 672 155 HOH HOH . D 4 HOH A 73 673 34 HOH HOH . D 4 HOH A 74 674 122 HOH HOH . D 4 HOH A 75 675 51 HOH HOH . D 4 HOH A 76 676 30 HOH HOH . D 4 HOH A 77 677 137 HOH HOH . D 4 HOH A 78 678 26 HOH HOH . D 4 HOH A 79 679 2 HOH HOH . D 4 HOH A 80 680 120 HOH HOH . D 4 HOH A 81 681 48 HOH HOH . D 4 HOH A 82 682 50 HOH HOH . D 4 HOH A 83 683 97 HOH HOH . D 4 HOH A 84 684 11 HOH HOH . D 4 HOH A 85 685 43 HOH HOH . D 4 HOH A 86 686 92 HOH HOH . D 4 HOH A 87 687 17 HOH HOH . D 4 HOH A 88 688 5 HOH HOH . D 4 HOH A 89 689 55 HOH HOH . D 4 HOH A 90 690 90 HOH HOH . D 4 HOH A 91 691 88 HOH HOH . D 4 HOH A 92 692 110 HOH HOH . D 4 HOH A 93 693 172 HOH HOH . D 4 HOH A 94 694 6 HOH HOH . D 4 HOH A 95 695 7 HOH HOH . D 4 HOH A 96 696 35 HOH HOH . D 4 HOH A 97 697 54 HOH HOH . D 4 HOH A 98 698 141 HOH HOH . D 4 HOH A 99 699 13 HOH HOH . D 4 HOH A 100 700 68 HOH HOH . D 4 HOH A 101 701 31 HOH HOH . D 4 HOH A 102 702 166 HOH HOH . D 4 HOH A 103 703 104 HOH HOH . D 4 HOH A 104 704 10 HOH HOH . D 4 HOH A 105 705 8 HOH HOH . D 4 HOH A 106 706 9 HOH HOH . D 4 HOH A 107 707 170 HOH HOH . D 4 HOH A 108 708 19 HOH HOH . D 4 HOH A 109 709 74 HOH HOH . D 4 HOH A 110 710 76 HOH HOH . D 4 HOH A 111 711 162 HOH HOH . D 4 HOH A 112 712 20 HOH HOH . D 4 HOH A 113 713 58 HOH HOH . D 4 HOH A 114 714 147 HOH HOH . D 4 HOH A 115 715 138 HOH HOH . D 4 HOH A 116 716 108 HOH HOH . D 4 HOH A 117 717 87 HOH HOH . D 4 HOH A 118 718 23 HOH HOH . D 4 HOH A 119 719 115 HOH HOH . D 4 HOH A 120 720 167 HOH HOH . D 4 HOH A 121 721 85 HOH HOH . D 4 HOH A 122 722 165 HOH HOH . D 4 HOH A 123 723 93 HOH HOH . D 4 HOH A 124 724 145 HOH HOH . D 4 HOH A 125 725 156 HOH HOH . D 4 HOH A 126 726 56 HOH HOH . D 4 HOH A 127 727 124 HOH HOH . D 4 HOH A 128 728 38 HOH HOH . D 4 HOH A 129 729 82 HOH HOH . D 4 HOH A 130 730 98 HOH HOH . D 4 HOH A 131 731 61 HOH HOH . D 4 HOH A 132 732 177 HOH HOH . D 4 HOH A 133 733 123 HOH HOH . D 4 HOH A 134 734 77 HOH HOH . D 4 HOH A 135 735 15 HOH HOH . D 4 HOH A 136 736 59 HOH HOH . D 4 HOH A 137 737 91 HOH HOH . D 4 HOH A 138 738 33 HOH HOH . D 4 HOH A 139 739 121 HOH HOH . D 4 HOH A 140 740 164 HOH HOH . D 4 HOH A 141 741 176 HOH HOH . D 4 HOH A 142 742 84 HOH HOH . D 4 HOH A 143 743 178 HOH HOH . D 4 HOH A 144 744 36 HOH HOH . D 4 HOH A 145 745 101 HOH HOH . D 4 HOH A 146 746 27 HOH HOH . D 4 HOH A 147 747 103 HOH HOH . D 4 HOH A 148 748 69 HOH HOH . D 4 HOH A 149 749 70 HOH HOH . D 4 HOH A 150 750 65 HOH HOH . D 4 HOH A 151 751 181 HOH HOH . D 4 HOH A 152 752 169 HOH HOH . D 4 HOH A 153 753 109 HOH HOH . D 4 HOH A 154 754 151 HOH HOH . D 4 HOH A 155 755 135 HOH HOH . D 4 HOH A 156 756 24 HOH HOH . D 4 HOH A 157 757 44 HOH HOH . D 4 HOH A 158 758 134 HOH HOH . D 4 HOH A 159 759 173 HOH HOH . D 4 HOH A 160 760 127 HOH HOH . D 4 HOH A 161 761 80 HOH HOH . D 4 HOH A 162 762 174 HOH HOH . D 4 HOH A 163 763 133 HOH HOH . D 4 HOH A 164 764 175 HOH HOH . D 4 HOH A 165 765 142 HOH HOH . D 4 HOH A 166 766 139 HOH HOH . D 4 HOH A 167 767 171 HOH HOH . D 4 HOH A 168 768 159 HOH HOH . D 4 HOH A 169 769 106 HOH HOH . D 4 HOH A 170 770 146 HOH HOH . D 4 HOH A 171 771 64 HOH HOH . D 4 HOH A 172 772 160 HOH HOH . D 4 HOH A 173 773 182 HOH HOH . D 4 HOH A 174 774 66 HOH HOH . D 4 HOH A 175 775 188 HOH HOH . D 4 HOH A 176 776 185 HOH HOH . D 4 HOH A 177 777 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -5.898 -0.949 -6.738 1 28.28 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 -7.17 -0.561 -7.18 1 28.19 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 -4.898 0.209 -6.892 1 21.95 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 -5.278 1.275 -6.038 1 21.03 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 -4.823 0.714 -8.325 1 24.7 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 -4.405 -0.315 -9.193 1 24.69 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . B 2 -5.948 -1.206 -5.803 1 33.94 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . B 2 -5.593 -1.706 -7.262 1 33.94 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . B 2 -7.637 -0.31 -6.516 1 33.84 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . B 2 -4.019 -0.102 -6.626 1 26.35 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . B 2 -4.689 1.38 -5.435 1 25.25 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . B 2 -4.191 1.449 -8.373 1 29.65 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . B 2 -5.699 1.028 -8.6 1 29.65 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . B 2 -4.745 -1.053 -8.941 1 29.64 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #