data_6KB0 # _model_server_result.job_id BcgFu4MEAjLF3HUcDnfAfg _model_server_result.datetime_utc '2024-11-23 17:36:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kb0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6KB0 # _exptl.entry_id 6KB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.403 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'icosa-5,8,11,14-tetraynoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.47 _cell.angle_gamma 90 _cell.entry_id 6KB0 _cell.length_a 44.736 _cell.length_b 61.725 _cell.length_c 52.971 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H24 O2' _chem_comp.formula_weight 296.403 _chem_comp.id ITY _chem_comp.mon_nstd_flag . _chem_comp.name 'icosa-5,8,11,14-tetraynoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5,8,11,14-eicosatetraynoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C05 ITY sing 186 n n C03 C05 ITY sing 187 n n C03 C04 ITY sing 188 n n C04 C06 ITY sing 189 n n C06 C10 ITY sing 190 n n C10 C13 ITY trip 191 n n C13 C15 ITY sing 192 n n C15 C18 ITY sing 193 n n C18 C21 ITY trip 194 n n C21 C19 ITY sing 195 n n C19 C22 ITY sing 196 n n C22 C20 ITY trip 197 n n C20 C17 ITY sing 198 n n C08 C11 ITY sing 199 n n C08 C09 ITY sing 200 n n C11 C14 ITY sing 201 n n C14 C16 ITY trip 202 n n C16 C17 ITY sing 203 n n C09 C12 ITY sing 204 n n C12 O01 ITY doub 205 n n C12 O02 ITY sing 206 n n C03 H032 ITY sing 207 n n C03 H031 ITY sing 208 n n C04 H041 ITY sing 209 n n C04 H042 ITY sing 210 n n C05 H051 ITY sing 211 n n C05 H052 ITY sing 212 n n C06 H062 ITY sing 213 n n C06 H061 ITY sing 214 n n C07 H071 ITY sing 215 n n C07 H073 ITY sing 216 n n C07 H072 ITY sing 217 n n C08 H082 ITY sing 218 n n C08 H081 ITY sing 219 n n C09 H091 ITY sing 220 n n C09 H092 ITY sing 221 n n C11 H112 ITY sing 222 n n C11 H111 ITY sing 223 n n C15 H152 ITY sing 224 n n C15 H151 ITY sing 225 n n C17 H171 ITY sing 226 n n C17 H172 ITY sing 227 n n C19 H191 ITY sing 228 n n C19 H192 ITY sing 229 n n O02 H1 ITY sing 230 n n # _atom_sites.entry_id 6KB0 _atom_sites.fract_transf_matrix[1][1] 0.022353 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006609 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 ITY A 1 502 1 ITY ITY . D 4 HOH A 1 601 122 HOH HOH . D 4 HOH A 2 602 94 HOH HOH . D 4 HOH A 3 603 162 HOH HOH . D 4 HOH A 4 604 65 HOH HOH . D 4 HOH A 5 605 170 HOH HOH . D 4 HOH A 6 606 107 HOH HOH . D 4 HOH A 7 607 127 HOH HOH . D 4 HOH A 8 608 198 HOH HOH . D 4 HOH A 9 609 164 HOH HOH . D 4 HOH A 10 610 21 HOH HOH . D 4 HOH A 11 611 117 HOH HOH . D 4 HOH A 12 612 183 HOH HOH . D 4 HOH A 13 613 121 HOH HOH . D 4 HOH A 14 614 175 HOH HOH . D 4 HOH A 15 615 199 HOH HOH . D 4 HOH A 16 616 2 HOH HOH . D 4 HOH A 17 617 171 HOH HOH . D 4 HOH A 18 618 86 HOH HOH . D 4 HOH A 19 619 189 HOH HOH . D 4 HOH A 20 620 118 HOH HOH . D 4 HOH A 21 621 79 HOH HOH . D 4 HOH A 22 622 97 HOH HOH . D 4 HOH A 23 623 108 HOH HOH . D 4 HOH A 24 624 153 HOH HOH . D 4 HOH A 25 625 177 HOH HOH . D 4 HOH A 26 626 51 HOH HOH . D 4 HOH A 27 627 193 HOH HOH . D 4 HOH A 28 628 111 HOH HOH . D 4 HOH A 29 629 135 HOH HOH . D 4 HOH A 30 630 69 HOH HOH . D 4 HOH A 31 631 184 HOH HOH . D 4 HOH A 32 632 169 HOH HOH . D 4 HOH A 33 633 119 HOH HOH . D 4 HOH A 34 634 178 HOH HOH . D 4 HOH A 35 635 179 HOH HOH . D 4 HOH A 36 636 172 HOH HOH . D 4 HOH A 37 637 128 HOH HOH . D 4 HOH A 38 638 163 HOH HOH . D 4 HOH A 39 639 77 HOH HOH . D 4 HOH A 40 640 136 HOH HOH . D 4 HOH A 41 641 57 HOH HOH . D 4 HOH A 42 642 20 HOH HOH . D 4 HOH A 43 643 53 HOH HOH . D 4 HOH A 44 644 99 HOH HOH . D 4 HOH A 45 645 3 HOH HOH . D 4 HOH A 46 646 159 HOH HOH . D 4 HOH A 47 647 50 HOH HOH . D 4 HOH A 48 648 17 HOH HOH . D 4 HOH A 49 649 186 HOH HOH . D 4 HOH A 50 650 192 HOH HOH . D 4 HOH A 51 651 114 HOH HOH . D 4 HOH A 52 652 35 HOH HOH . D 4 HOH A 53 653 43 HOH HOH . D 4 HOH A 54 654 63 HOH HOH . D 4 HOH A 55 655 56 HOH HOH . D 4 HOH A 56 656 140 HOH HOH . D 4 HOH A 57 657 49 HOH HOH . D 4 HOH A 58 658 146 HOH HOH . D 4 HOH A 59 659 11 HOH HOH . D 4 HOH A 60 660 124 HOH HOH . D 4 HOH A 61 661 10 HOH HOH . D 4 HOH A 62 662 34 HOH HOH . D 4 HOH A 63 663 174 HOH HOH . D 4 HOH A 64 664 32 HOH HOH . D 4 HOH A 65 665 149 HOH HOH . D 4 HOH A 66 666 19 HOH HOH . D 4 HOH A 67 667 191 HOH HOH . D 4 HOH A 68 668 68 HOH HOH . D 4 HOH A 69 669 45 HOH HOH . D 4 HOH A 70 670 13 HOH HOH . D 4 HOH A 71 671 182 HOH HOH . D 4 HOH A 72 672 110 HOH HOH . D 4 HOH A 73 673 27 HOH HOH . D 4 HOH A 74 674 47 HOH HOH . D 4 HOH A 75 675 137 HOH HOH . D 4 HOH A 76 676 7 HOH HOH . D 4 HOH A 77 677 74 HOH HOH . D 4 HOH A 78 678 185 HOH HOH . D 4 HOH A 79 679 38 HOH HOH . D 4 HOH A 80 680 39 HOH HOH . D 4 HOH A 81 681 40 HOH HOH . D 4 HOH A 82 682 62 HOH HOH . D 4 HOH A 83 683 167 HOH HOH . D 4 HOH A 84 684 14 HOH HOH . D 4 HOH A 85 685 66 HOH HOH . D 4 HOH A 86 686 29 HOH HOH . D 4 HOH A 87 687 82 HOH HOH . D 4 HOH A 88 688 101 HOH HOH . D 4 HOH A 89 689 129 HOH HOH . D 4 HOH A 90 690 24 HOH HOH . D 4 HOH A 91 691 187 HOH HOH . D 4 HOH A 92 692 113 HOH HOH . D 4 HOH A 93 693 141 HOH HOH . D 4 HOH A 94 694 55 HOH HOH . D 4 HOH A 95 695 100 HOH HOH . D 4 HOH A 96 696 64 HOH HOH . D 4 HOH A 97 697 15 HOH HOH . D 4 HOH A 98 698 33 HOH HOH . D 4 HOH A 99 699 36 HOH HOH . D 4 HOH A 100 700 168 HOH HOH . D 4 HOH A 101 701 72 HOH HOH . D 4 HOH A 102 702 152 HOH HOH . D 4 HOH A 103 703 61 HOH HOH . D 4 HOH A 104 704 18 HOH HOH . D 4 HOH A 105 705 41 HOH HOH . D 4 HOH A 106 706 150 HOH HOH . D 4 HOH A 107 707 37 HOH HOH . D 4 HOH A 108 708 145 HOH HOH . D 4 HOH A 109 709 91 HOH HOH . D 4 HOH A 110 710 123 HOH HOH . D 4 HOH A 111 711 5 HOH HOH . D 4 HOH A 112 712 8 HOH HOH . D 4 HOH A 113 713 1 HOH HOH . D 4 HOH A 114 714 9 HOH HOH . D 4 HOH A 115 715 67 HOH HOH . D 4 HOH A 116 716 25 HOH HOH . D 4 HOH A 117 717 195 HOH HOH . D 4 HOH A 118 718 4 HOH HOH . D 4 HOH A 119 719 52 HOH HOH . D 4 HOH A 120 720 30 HOH HOH . D 4 HOH A 121 721 6 HOH HOH . D 4 HOH A 122 722 104 HOH HOH . D 4 HOH A 123 723 60 HOH HOH . D 4 HOH A 124 724 120 HOH HOH . D 4 HOH A 125 725 126 HOH HOH . D 4 HOH A 126 726 130 HOH HOH . D 4 HOH A 127 727 160 HOH HOH . D 4 HOH A 128 728 181 HOH HOH . D 4 HOH A 129 729 42 HOH HOH . D 4 HOH A 130 730 54 HOH HOH . D 4 HOH A 131 731 48 HOH HOH . D 4 HOH A 132 732 116 HOH HOH . D 4 HOH A 133 733 194 HOH HOH . D 4 HOH A 134 734 87 HOH HOH . D 4 HOH A 135 735 75 HOH HOH . D 4 HOH A 136 736 165 HOH HOH . D 4 HOH A 137 737 22 HOH HOH . D 4 HOH A 138 738 158 HOH HOH . D 4 HOH A 139 739 115 HOH HOH . D 4 HOH A 140 740 102 HOH HOH . D 4 HOH A 141 741 132 HOH HOH . D 4 HOH A 142 742 138 HOH HOH . D 4 HOH A 143 743 161 HOH HOH . D 4 HOH A 144 744 148 HOH HOH . D 4 HOH A 145 745 93 HOH HOH . D 4 HOH A 146 746 180 HOH HOH . D 4 HOH A 147 747 16 HOH HOH . D 4 HOH A 148 748 92 HOH HOH . D 4 HOH A 149 749 46 HOH HOH . D 4 HOH A 150 750 188 HOH HOH . D 4 HOH A 151 751 23 HOH HOH . D 4 HOH A 152 752 133 HOH HOH . D 4 HOH A 153 753 155 HOH HOH . D 4 HOH A 154 754 78 HOH HOH . D 4 HOH A 155 755 76 HOH HOH . D 4 HOH A 156 756 151 HOH HOH . D 4 HOH A 157 757 157 HOH HOH . D 4 HOH A 158 758 190 HOH HOH . D 4 HOH A 159 759 95 HOH HOH . D 4 HOH A 160 760 26 HOH HOH . D 4 HOH A 161 761 84 HOH HOH . D 4 HOH A 162 762 58 HOH HOH . D 4 HOH A 163 763 109 HOH HOH . D 4 HOH A 164 764 83 HOH HOH . D 4 HOH A 165 765 70 HOH HOH . D 4 HOH A 166 766 12 HOH HOH . D 4 HOH A 167 767 156 HOH HOH . D 4 HOH A 168 768 106 HOH HOH . D 4 HOH A 169 769 112 HOH HOH . D 4 HOH A 170 770 147 HOH HOH . D 4 HOH A 171 771 197 HOH HOH . D 4 HOH A 172 772 103 HOH HOH . D 4 HOH A 173 773 31 HOH HOH . D 4 HOH A 174 774 28 HOH HOH . D 4 HOH A 175 775 166 HOH HOH . D 4 HOH A 176 776 88 HOH HOH . D 4 HOH A 177 777 143 HOH HOH . D 4 HOH A 178 778 85 HOH HOH . D 4 HOH A 179 779 96 HOH HOH . D 4 HOH A 180 780 176 HOH HOH . D 4 HOH A 181 781 73 HOH HOH . D 4 HOH A 182 782 89 HOH HOH . D 4 HOH A 183 783 81 HOH HOH . D 4 HOH A 184 784 125 HOH HOH . D 4 HOH A 185 785 196 HOH HOH . D 4 HOH A 186 786 173 HOH HOH . D 4 HOH A 187 787 71 HOH HOH . D 4 HOH A 188 788 59 HOH HOH . D 4 HOH A 189 789 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C03 ITY . . . C 3 11.019 9.582 -13.397 1 31.67 ? C03 ITY 502 A 1 HETATM 2 C C04 ITY . . . C 3 10.415 8.368 -12.743 1 27.25 ? C04 ITY 502 A 1 HETATM 3 C C05 ITY . . . C 3 10.137 10.775 -13.071 1 35.43 ? C05 ITY 502 A 1 HETATM 4 C C06 ITY . . . C 3 11.521 7.365 -12.506 1 31.45 ? C06 ITY 502 A 1 HETATM 5 C C07 ITY . . . C 3 10.55 11.856 -14.042 1 29.5 ? C07 ITY 502 A 1 HETATM 6 C C08 ITY . . . C 3 13.79 1.394 -4.036 1 14.08 ? C08 ITY 502 A 1 HETATM 7 C C09 ITY . . . C 3 14.269 2.667 -3.324 1 13.84 ? C09 ITY 502 A 1 HETATM 8 C C10 ITY . . . C 3 10.976 6.197 -11.713 1 24.25 ? C10 ITY 502 A 1 HETATM 9 C C11 ITY . . . C 3 12.561 0.781 -3.38 1 12.82 ? C11 ITY 502 A 1 HETATM 10 C C12 ITY . . . C 3 14.674 2.42 -1.886 1 15.38 ? C12 ITY 502 A 1 HETATM 11 C C13 ITY . . . C 3 10.598 5.277 -11.078 1 21.96 ? C13 ITY 502 A 1 HETATM 12 C C14 ITY . . . C 3 11.483 1.829 -3.3 1 13.5 ? C14 ITY 502 A 1 HETATM 13 C C15 ITY . . . C 3 10.149 4.081 -10.253 1 31.65 ? C15 ITY 502 A 1 HETATM 14 C C16 ITY . . . C 3 10.66 2.658 -3.199 1 12.63 ? C16 ITY 502 A 1 HETATM 15 C C17 ITY . . . C 3 9.62 3.749 -3.023 1 14.71 ? C17 ITY 502 A 1 HETATM 16 C C18 ITY . . . C 3 9.492 4.547 -8.953 1 28.16 ? C18 ITY 502 A 1 HETATM 17 C C19 ITY . . . C 3 8.232 5.309 -6.685 1 19.26 ? C19 ITY 502 A 1 HETATM 18 C C20 ITY . . . C 3 9.148 4.193 -4.39 1 14.43 ? C20 ITY 502 A 1 HETATM 19 C C21 ITY . . . C 3 8.956 4.868 -7.945 1 26.67 ? C21 ITY 502 A 1 HETATM 20 C C22 ITY . . . C 3 8.759 4.617 -5.428 1 13.76 ? C22 ITY 502 A 1 HETATM 21 O O01 ITY . . . C 3 15.334 1.393 -1.56 1 16.77 -1 O01 ITY 502 A 1 HETATM 22 O O02 ITY . . . C 3 14.345 3.251 -1.021 1 13.04 ? O02 ITY 502 A 1 HETATM 23 H H032 ITY . . . C 3 11.913 9.731 -13.051 1 38.02 ? H032 ITY 502 A 1 HETATM 24 H H031 ITY . . . C 3 11.055 9.454 -14.357 1 38.02 ? H031 ITY 502 A 1 HETATM 25 H H041 ITY . . . C 3 9.742 7.983 -13.325 1 32.71 ? H041 ITY 502 A 1 HETATM 26 H H042 ITY . . . C 3 10.013 8.618 -11.896 1 32.71 ? H042 ITY 502 A 1 HETATM 27 H H051 ITY . . . C 3 9.203 10.547 -13.199 1 42.53 ? H051 ITY 502 A 1 HETATM 28 H H052 ITY . . . C 3 10.291 11.066 -12.159 1 42.53 ? H052 ITY 502 A 1 HETATM 29 H H062 ITY . . . C 3 12.24 7.786 -12.01 1 37.75 ? H062 ITY 502 A 1 HETATM 30 H H061 ITY . . . C 3 11.859 7.048 -13.359 1 37.75 ? H061 ITY 502 A 1 HETATM 31 H H071 ITY . . . C 3 10.028 12.656 -13.876 1 35.41 ? H071 ITY 502 A 1 HETATM 32 H H073 ITY . . . C 3 11.492 12.055 -13.924 1 35.41 ? H073 ITY 502 A 1 HETATM 33 H H072 ITY . . . C 3 10.395 11.552 -14.95 1 35.41 ? H072 ITY 502 A 1 HETATM 34 H H082 ITY . . . C 3 13.576 1.613 -4.957 1 16.9 ? H082 ITY 502 A 1 HETATM 35 H H081 ITY . . . C 3 14.507 0.741 -4.027 1 16.9 ? H081 ITY 502 A 1 HETATM 36 H H091 ITY . . . C 3 13.554 3.321 -3.339 1 16.62 ? H091 ITY 502 A 1 HETATM 37 H H092 ITY . . . C 3 15.031 3.026 -3.805 1 16.62 ? H092 ITY 502 A 1 HETATM 38 H H112 ITY . . . C 3 12.786 0.477 -2.487 1 15.39 ? H112 ITY 502 A 1 HETATM 39 H H111 ITY . . . C 3 12.248 0.032 -3.911 1 15.39 ? H111 ITY 502 A 1 HETATM 40 H H152 ITY . . . C 3 10.918 3.529 -10.043 1 37.98 ? H152 ITY 502 A 1 HETATM 41 H H151 ITY . . . C 3 9.511 3.56 -10.765 1 37.98 ? H151 ITY 502 A 1 HETATM 42 H H171 ITY . . . C 3 8.868 3.404 -2.515 1 17.66 ? H171 ITY 502 A 1 HETATM 43 H H172 ITY . . . C 3 10.013 4.501 -2.553 1 17.66 ? H172 ITY 502 A 1 HETATM 44 H H191 ITY . . . C 3 7.288 5.109 -6.78 1 23.13 ? H191 ITY 502 A 1 HETATM 45 H H192 ITY . . . C 3 8.341 6.268 -6.582 1 23.13 ? H192 ITY 502 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #