data_6KB1 # _model_server_result.job_id rb9GvfpdO16n9C5PCyyVTQ _model_server_result.datetime_utc '2024-10-31 06:21:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kb1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6KB1 # _exptl.entry_id 6KB1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.72 _cell.angle_gamma 90 _cell.entry_id 6KB1 _cell.length_a 44.582 _cell.length_b 61.369 _cell.length_c 52.994 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6KB1 _atom_sites.fract_transf_matrix[1][1] 0.022431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006738 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019703 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 T4T A 1 502 1 T4T T4T . D 4 HOH A 1 601 145 HOH HOH . D 4 HOH A 2 602 94 HOH HOH . D 4 HOH A 3 603 128 HOH HOH . D 4 HOH A 4 604 192 HOH HOH . D 4 HOH A 5 605 175 HOH HOH . D 4 HOH A 6 606 177 HOH HOH . D 4 HOH A 7 607 187 HOH HOH . D 4 HOH A 8 608 109 HOH HOH . D 4 HOH A 9 609 157 HOH HOH . D 4 HOH A 10 610 185 HOH HOH . D 4 HOH A 11 611 166 HOH HOH . D 4 HOH A 12 612 33 HOH HOH . D 4 HOH A 13 613 84 HOH HOH . D 4 HOH A 14 614 181 HOH HOH . D 4 HOH A 15 615 138 HOH HOH . D 4 HOH A 16 616 78 HOH HOH . D 4 HOH A 17 617 2 HOH HOH . D 4 HOH A 18 618 110 HOH HOH . D 4 HOH A 19 619 52 HOH HOH . D 4 HOH A 20 620 39 HOH HOH . D 4 HOH A 21 621 103 HOH HOH . D 4 HOH A 22 622 156 HOH HOH . D 4 HOH A 23 623 92 HOH HOH . D 4 HOH A 24 624 174 HOH HOH . D 4 HOH A 25 625 111 HOH HOH . D 4 HOH A 26 626 98 HOH HOH . D 4 HOH A 27 627 183 HOH HOH . D 4 HOH A 28 628 38 HOH HOH . D 4 HOH A 29 629 160 HOH HOH . D 4 HOH A 30 630 151 HOH HOH . D 4 HOH A 31 631 124 HOH HOH . D 4 HOH A 32 632 46 HOH HOH . D 4 HOH A 33 633 19 HOH HOH . D 4 HOH A 34 634 154 HOH HOH . D 4 HOH A 35 635 9 HOH HOH . D 4 HOH A 36 636 4 HOH HOH . D 4 HOH A 37 637 41 HOH HOH . D 4 HOH A 38 638 71 HOH HOH . D 4 HOH A 39 639 147 HOH HOH . D 4 HOH A 40 640 133 HOH HOH . D 4 HOH A 41 641 155 HOH HOH . D 4 HOH A 42 642 114 HOH HOH . D 4 HOH A 43 643 26 HOH HOH . D 4 HOH A 44 644 126 HOH HOH . D 4 HOH A 45 645 44 HOH HOH . D 4 HOH A 46 646 117 HOH HOH . D 4 HOH A 47 647 112 HOH HOH . D 4 HOH A 48 648 67 HOH HOH . D 4 HOH A 49 649 77 HOH HOH . D 4 HOH A 50 650 35 HOH HOH . D 4 HOH A 51 651 60 HOH HOH . D 4 HOH A 52 652 73 HOH HOH . D 4 HOH A 53 653 3 HOH HOH . D 4 HOH A 54 654 159 HOH HOH . D 4 HOH A 55 655 25 HOH HOH . D 4 HOH A 56 656 27 HOH HOH . D 4 HOH A 57 657 55 HOH HOH . D 4 HOH A 58 658 104 HOH HOH . D 4 HOH A 59 659 150 HOH HOH . D 4 HOH A 60 660 134 HOH HOH . D 4 HOH A 61 661 118 HOH HOH . D 4 HOH A 62 662 95 HOH HOH . D 4 HOH A 63 663 105 HOH HOH . D 4 HOH A 64 664 40 HOH HOH . D 4 HOH A 65 665 165 HOH HOH . D 4 HOH A 66 666 29 HOH HOH . D 4 HOH A 67 667 87 HOH HOH . D 4 HOH A 68 668 45 HOH HOH . D 4 HOH A 69 669 132 HOH HOH . D 4 HOH A 70 670 50 HOH HOH . D 4 HOH A 71 671 53 HOH HOH . D 4 HOH A 72 672 139 HOH HOH . D 4 HOH A 73 673 14 HOH HOH . D 4 HOH A 74 674 7 HOH HOH . D 4 HOH A 75 675 59 HOH HOH . D 4 HOH A 76 676 8 HOH HOH . D 4 HOH A 77 677 85 HOH HOH . D 4 HOH A 78 678 36 HOH HOH . D 4 HOH A 79 679 90 HOH HOH . D 4 HOH A 80 680 64 HOH HOH . D 4 HOH A 81 681 65 HOH HOH . D 4 HOH A 82 682 120 HOH HOH . D 4 HOH A 83 683 23 HOH HOH . D 4 HOH A 84 684 5 HOH HOH . D 4 HOH A 85 685 153 HOH HOH . D 4 HOH A 86 686 182 HOH HOH . D 4 HOH A 87 687 31 HOH HOH . D 4 HOH A 88 688 115 HOH HOH . D 4 HOH A 89 689 58 HOH HOH . D 4 HOH A 90 690 74 HOH HOH . D 4 HOH A 91 691 11 HOH HOH . D 4 HOH A 92 692 13 HOH HOH . D 4 HOH A 93 693 1 HOH HOH . D 4 HOH A 94 694 37 HOH HOH . D 4 HOH A 95 695 152 HOH HOH . D 4 HOH A 96 696 191 HOH HOH . D 4 HOH A 97 697 169 HOH HOH . D 4 HOH A 98 698 6 HOH HOH . D 4 HOH A 99 699 15 HOH HOH . D 4 HOH A 100 700 86 HOH HOH . D 4 HOH A 101 701 75 HOH HOH . D 4 HOH A 102 702 17 HOH HOH . D 4 HOH A 103 703 20 HOH HOH . D 4 HOH A 104 704 167 HOH HOH . D 4 HOH A 105 705 81 HOH HOH . D 4 HOH A 106 706 10 HOH HOH . D 4 HOH A 107 707 72 HOH HOH . D 4 HOH A 108 708 119 HOH HOH . D 4 HOH A 109 709 16 HOH HOH . D 4 HOH A 110 710 163 HOH HOH . D 4 HOH A 111 711 43 HOH HOH . D 4 HOH A 112 712 48 HOH HOH . D 4 HOH A 113 713 162 HOH HOH . D 4 HOH A 114 714 143 HOH HOH . D 4 HOH A 115 715 51 HOH HOH . D 4 HOH A 116 716 22 HOH HOH . D 4 HOH A 117 717 127 HOH HOH . D 4 HOH A 118 718 80 HOH HOH . D 4 HOH A 119 719 180 HOH HOH . D 4 HOH A 120 720 130 HOH HOH . D 4 HOH A 121 721 100 HOH HOH . D 4 HOH A 122 722 18 HOH HOH . D 4 HOH A 123 723 129 HOH HOH . D 4 HOH A 124 724 170 HOH HOH . D 4 HOH A 125 725 66 HOH HOH . D 4 HOH A 126 726 54 HOH HOH . D 4 HOH A 127 727 82 HOH HOH . D 4 HOH A 128 728 173 HOH HOH . D 4 HOH A 129 729 91 HOH HOH . D 4 HOH A 130 730 176 HOH HOH . D 4 HOH A 131 731 24 HOH HOH . D 4 HOH A 132 732 63 HOH HOH . D 4 HOH A 133 733 21 HOH HOH . D 4 HOH A 134 734 146 HOH HOH . D 4 HOH A 135 735 56 HOH HOH . D 4 HOH A 136 736 107 HOH HOH . D 4 HOH A 137 737 96 HOH HOH . D 4 HOH A 138 738 30 HOH HOH . D 4 HOH A 139 739 32 HOH HOH . D 4 HOH A 140 740 12 HOH HOH . D 4 HOH A 141 741 108 HOH HOH . D 4 HOH A 142 742 68 HOH HOH . D 4 HOH A 143 743 49 HOH HOH . D 4 HOH A 144 744 101 HOH HOH . D 4 HOH A 145 745 70 HOH HOH . D 4 HOH A 146 746 178 HOH HOH . D 4 HOH A 147 747 168 HOH HOH . D 4 HOH A 148 748 42 HOH HOH . D 4 HOH A 149 749 76 HOH HOH . D 4 HOH A 150 750 140 HOH HOH . D 4 HOH A 151 751 179 HOH HOH . D 4 HOH A 152 752 121 HOH HOH . D 4 HOH A 153 753 164 HOH HOH . D 4 HOH A 154 754 141 HOH HOH . D 4 HOH A 155 755 28 HOH HOH . D 4 HOH A 156 756 171 HOH HOH . D 4 HOH A 157 757 79 HOH HOH . D 4 HOH A 158 758 189 HOH HOH . D 4 HOH A 159 759 69 HOH HOH . D 4 HOH A 160 760 34 HOH HOH . D 4 HOH A 161 761 172 HOH HOH . D 4 HOH A 162 762 57 HOH HOH . D 4 HOH A 163 763 113 HOH HOH . D 4 HOH A 164 764 106 HOH HOH . D 4 HOH A 165 765 122 HOH HOH . D 4 HOH A 166 766 186 HOH HOH . D 4 HOH A 167 767 125 HOH HOH . D 4 HOH A 168 768 131 HOH HOH . D 4 HOH A 169 769 184 HOH HOH . D 4 HOH A 170 770 137 HOH HOH . D 4 HOH A 171 771 188 HOH HOH . D 4 HOH A 172 772 116 HOH HOH . D 4 HOH A 173 773 123 HOH HOH . D 4 HOH A 174 774 61 HOH HOH . D 4 HOH A 175 775 190 HOH HOH . D 4 HOH A 176 776 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -4.961 0.244 -8.223 1 25.14 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 -4.572 -0.837 -9.015 1 26.48 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 -5.007 -0.194 -6.783 1 21.73 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 -5.351 0.949 -6.029 1 23.78 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 -6.03 -1.318 -6.543 1 29.48 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 -7.276 -1.016 -7.123 1 29.41 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . B 2 -4.322 0.967 -8.322 1 30.18 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . B 2 -5.84 0.548 -8.498 1 30.18 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . B 2 -4.993 -1.534 -8.772 1 31.79 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . B 2 -4.127 -0.501 -6.515 1 26.08 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . B 2 -5.923 1.41 -6.457 1 28.56 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . B 2 -5.692 -2.142 -6.929 1 35.39 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . B 2 -6.147 -1.441 -5.588 1 35.39 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . B 2 -7.746 -1.723 -7.17 1 35.31 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #