data_6KB1 # _model_server_result.job_id FDQdbVF-5xHPKYykESqsOQ _model_server_result.datetime_utc '2024-11-27 11:01:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kb1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6KB1 # _exptl.entry_id 6KB1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-tetradecylsulfanylethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.72 _cell.angle_gamma 90 _cell.entry_id 6KB1 _cell.length_a 44.582 _cell.length_b 61.369 _cell.length_c 52.994 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KB1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H32 O2 S' _chem_comp.formula_weight 288.489 _chem_comp.id T4T _chem_comp.mon_nstd_flag . _chem_comp.name '2-tetradecylsulfanylethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C15 T4T sing 303 n n C15 C13 T4T sing 304 n n C13 C11 T4T sing 305 n n C11 C09 T4T sing 306 n n C09 C07 T4T sing 307 n n C07 C05 T4T sing 308 n n C05 C04 T4T sing 309 n n C04 C06 T4T sing 310 n n C06 C08 T4T sing 311 n n C08 C10 T4T sing 312 n n C10 C12 T4T sing 313 n n C12 C14 T4T sing 314 n n S01 C18 T4T sing 315 n n S01 C16 T4T sing 316 n n C14 C16 T4T sing 317 n n C18 C19 T4T sing 318 n n C19 O02 T4T doub 319 n n C19 O03 T4T sing 320 n n C04 H042 T4T sing 321 n n C04 H041 T4T sing 322 n n C05 H052 T4T sing 323 n n C05 H051 T4T sing 324 n n C06 H061 T4T sing 325 n n C06 H062 T4T sing 326 n n C07 H071 T4T sing 327 n n C07 H072 T4T sing 328 n n C08 H082 T4T sing 329 n n C08 H081 T4T sing 330 n n C09 H092 T4T sing 331 n n C09 H091 T4T sing 332 n n C10 H101 T4T sing 333 n n C10 H102 T4T sing 334 n n C11 H112 T4T sing 335 n n C11 H111 T4T sing 336 n n C12 H122 T4T sing 337 n n C12 H121 T4T sing 338 n n C13 H132 T4T sing 339 n n C13 H131 T4T sing 340 n n C14 H142 T4T sing 341 n n C14 H141 T4T sing 342 n n C15 H152 T4T sing 343 n n C15 H151 T4T sing 344 n n C16 H161 T4T sing 345 n n C16 H162 T4T sing 346 n n C17 H171 T4T sing 347 n n C17 H172 T4T sing 348 n n C17 H173 T4T sing 349 n n C18 H182 T4T sing 350 n n C18 H181 T4T sing 351 n n O03 H1 T4T sing 352 n n # _atom_sites.entry_id 6KB1 _atom_sites.fract_transf_matrix[1][1] 0.022431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006738 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019703 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 T4T A 1 502 1 T4T T4T . D 4 HOH A 1 601 145 HOH HOH . D 4 HOH A 2 602 94 HOH HOH . D 4 HOH A 3 603 128 HOH HOH . D 4 HOH A 4 604 192 HOH HOH . D 4 HOH A 5 605 175 HOH HOH . D 4 HOH A 6 606 177 HOH HOH . D 4 HOH A 7 607 187 HOH HOH . D 4 HOH A 8 608 109 HOH HOH . D 4 HOH A 9 609 157 HOH HOH . D 4 HOH A 10 610 185 HOH HOH . D 4 HOH A 11 611 166 HOH HOH . D 4 HOH A 12 612 33 HOH HOH . D 4 HOH A 13 613 84 HOH HOH . D 4 HOH A 14 614 181 HOH HOH . D 4 HOH A 15 615 138 HOH HOH . D 4 HOH A 16 616 78 HOH HOH . D 4 HOH A 17 617 2 HOH HOH . D 4 HOH A 18 618 110 HOH HOH . D 4 HOH A 19 619 52 HOH HOH . D 4 HOH A 20 620 39 HOH HOH . D 4 HOH A 21 621 103 HOH HOH . D 4 HOH A 22 622 156 HOH HOH . D 4 HOH A 23 623 92 HOH HOH . D 4 HOH A 24 624 174 HOH HOH . D 4 HOH A 25 625 111 HOH HOH . D 4 HOH A 26 626 98 HOH HOH . D 4 HOH A 27 627 183 HOH HOH . D 4 HOH A 28 628 38 HOH HOH . D 4 HOH A 29 629 160 HOH HOH . D 4 HOH A 30 630 151 HOH HOH . D 4 HOH A 31 631 124 HOH HOH . D 4 HOH A 32 632 46 HOH HOH . D 4 HOH A 33 633 19 HOH HOH . D 4 HOH A 34 634 154 HOH HOH . D 4 HOH A 35 635 9 HOH HOH . D 4 HOH A 36 636 4 HOH HOH . D 4 HOH A 37 637 41 HOH HOH . D 4 HOH A 38 638 71 HOH HOH . D 4 HOH A 39 639 147 HOH HOH . D 4 HOH A 40 640 133 HOH HOH . D 4 HOH A 41 641 155 HOH HOH . D 4 HOH A 42 642 114 HOH HOH . D 4 HOH A 43 643 26 HOH HOH . D 4 HOH A 44 644 126 HOH HOH . D 4 HOH A 45 645 44 HOH HOH . D 4 HOH A 46 646 117 HOH HOH . D 4 HOH A 47 647 112 HOH HOH . D 4 HOH A 48 648 67 HOH HOH . D 4 HOH A 49 649 77 HOH HOH . D 4 HOH A 50 650 35 HOH HOH . D 4 HOH A 51 651 60 HOH HOH . D 4 HOH A 52 652 73 HOH HOH . D 4 HOH A 53 653 3 HOH HOH . D 4 HOH A 54 654 159 HOH HOH . D 4 HOH A 55 655 25 HOH HOH . D 4 HOH A 56 656 27 HOH HOH . D 4 HOH A 57 657 55 HOH HOH . D 4 HOH A 58 658 104 HOH HOH . D 4 HOH A 59 659 150 HOH HOH . D 4 HOH A 60 660 134 HOH HOH . D 4 HOH A 61 661 118 HOH HOH . D 4 HOH A 62 662 95 HOH HOH . D 4 HOH A 63 663 105 HOH HOH . D 4 HOH A 64 664 40 HOH HOH . D 4 HOH A 65 665 165 HOH HOH . D 4 HOH A 66 666 29 HOH HOH . D 4 HOH A 67 667 87 HOH HOH . D 4 HOH A 68 668 45 HOH HOH . D 4 HOH A 69 669 132 HOH HOH . D 4 HOH A 70 670 50 HOH HOH . D 4 HOH A 71 671 53 HOH HOH . D 4 HOH A 72 672 139 HOH HOH . D 4 HOH A 73 673 14 HOH HOH . D 4 HOH A 74 674 7 HOH HOH . D 4 HOH A 75 675 59 HOH HOH . D 4 HOH A 76 676 8 HOH HOH . D 4 HOH A 77 677 85 HOH HOH . D 4 HOH A 78 678 36 HOH HOH . D 4 HOH A 79 679 90 HOH HOH . D 4 HOH A 80 680 64 HOH HOH . D 4 HOH A 81 681 65 HOH HOH . D 4 HOH A 82 682 120 HOH HOH . D 4 HOH A 83 683 23 HOH HOH . D 4 HOH A 84 684 5 HOH HOH . D 4 HOH A 85 685 153 HOH HOH . D 4 HOH A 86 686 182 HOH HOH . D 4 HOH A 87 687 31 HOH HOH . D 4 HOH A 88 688 115 HOH HOH . D 4 HOH A 89 689 58 HOH HOH . D 4 HOH A 90 690 74 HOH HOH . D 4 HOH A 91 691 11 HOH HOH . D 4 HOH A 92 692 13 HOH HOH . D 4 HOH A 93 693 1 HOH HOH . D 4 HOH A 94 694 37 HOH HOH . D 4 HOH A 95 695 152 HOH HOH . D 4 HOH A 96 696 191 HOH HOH . D 4 HOH A 97 697 169 HOH HOH . D 4 HOH A 98 698 6 HOH HOH . D 4 HOH A 99 699 15 HOH HOH . D 4 HOH A 100 700 86 HOH HOH . D 4 HOH A 101 701 75 HOH HOH . D 4 HOH A 102 702 17 HOH HOH . D 4 HOH A 103 703 20 HOH HOH . D 4 HOH A 104 704 167 HOH HOH . D 4 HOH A 105 705 81 HOH HOH . D 4 HOH A 106 706 10 HOH HOH . D 4 HOH A 107 707 72 HOH HOH . D 4 HOH A 108 708 119 HOH HOH . D 4 HOH A 109 709 16 HOH HOH . D 4 HOH A 110 710 163 HOH HOH . D 4 HOH A 111 711 43 HOH HOH . D 4 HOH A 112 712 48 HOH HOH . D 4 HOH A 113 713 162 HOH HOH . D 4 HOH A 114 714 143 HOH HOH . D 4 HOH A 115 715 51 HOH HOH . D 4 HOH A 116 716 22 HOH HOH . D 4 HOH A 117 717 127 HOH HOH . D 4 HOH A 118 718 80 HOH HOH . D 4 HOH A 119 719 180 HOH HOH . D 4 HOH A 120 720 130 HOH HOH . D 4 HOH A 121 721 100 HOH HOH . D 4 HOH A 122 722 18 HOH HOH . D 4 HOH A 123 723 129 HOH HOH . D 4 HOH A 124 724 170 HOH HOH . D 4 HOH A 125 725 66 HOH HOH . D 4 HOH A 126 726 54 HOH HOH . D 4 HOH A 127 727 82 HOH HOH . D 4 HOH A 128 728 173 HOH HOH . D 4 HOH A 129 729 91 HOH HOH . D 4 HOH A 130 730 176 HOH HOH . D 4 HOH A 131 731 24 HOH HOH . D 4 HOH A 132 732 63 HOH HOH . D 4 HOH A 133 733 21 HOH HOH . D 4 HOH A 134 734 146 HOH HOH . D 4 HOH A 135 735 56 HOH HOH . D 4 HOH A 136 736 107 HOH HOH . D 4 HOH A 137 737 96 HOH HOH . D 4 HOH A 138 738 30 HOH HOH . D 4 HOH A 139 739 32 HOH HOH . D 4 HOH A 140 740 12 HOH HOH . D 4 HOH A 141 741 108 HOH HOH . D 4 HOH A 142 742 68 HOH HOH . D 4 HOH A 143 743 49 HOH HOH . D 4 HOH A 144 744 101 HOH HOH . D 4 HOH A 145 745 70 HOH HOH . D 4 HOH A 146 746 178 HOH HOH . D 4 HOH A 147 747 168 HOH HOH . D 4 HOH A 148 748 42 HOH HOH . D 4 HOH A 149 749 76 HOH HOH . D 4 HOH A 150 750 140 HOH HOH . D 4 HOH A 151 751 179 HOH HOH . D 4 HOH A 152 752 121 HOH HOH . D 4 HOH A 153 753 164 HOH HOH . D 4 HOH A 154 754 141 HOH HOH . D 4 HOH A 155 755 28 HOH HOH . D 4 HOH A 156 756 171 HOH HOH . D 4 HOH A 157 757 79 HOH HOH . D 4 HOH A 158 758 189 HOH HOH . D 4 HOH A 159 759 69 HOH HOH . D 4 HOH A 160 760 34 HOH HOH . D 4 HOH A 161 761 172 HOH HOH . D 4 HOH A 162 762 57 HOH HOH . D 4 HOH A 163 763 113 HOH HOH . D 4 HOH A 164 764 106 HOH HOH . D 4 HOH A 165 765 122 HOH HOH . D 4 HOH A 166 766 186 HOH HOH . D 4 HOH A 167 767 125 HOH HOH . D 4 HOH A 168 768 131 HOH HOH . D 4 HOH A 169 769 184 HOH HOH . D 4 HOH A 170 770 137 HOH HOH . D 4 HOH A 171 771 188 HOH HOH . D 4 HOH A 172 772 116 HOH HOH . D 4 HOH A 173 773 123 HOH HOH . D 4 HOH A 174 774 61 HOH HOH . D 4 HOH A 175 775 190 HOH HOH . D 4 HOH A 176 776 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C04 T4T . . . C 3 9.581 4.667 -6.99 1 33.16 ? C04 T4T 502 A 1 HETATM 2 C C05 T4T . . . C 3 9.847 4.197 -8.423 1 29.89 ? C05 T4T 502 A 1 HETATM 3 C C06 T4T . . . C 3 8.617 3.758 -6.237 1 26.12 ? C06 T4T 502 A 1 HETATM 4 C C07 T4T . . . C 3 10.196 5.462 -9.225 1 29.17 ? C07 T4T 502 A 1 HETATM 5 C C08 T4T . . . C 3 9.232 2.987 -5.098 1 27.29 ? C08 T4T 502 A 1 HETATM 6 C C09 T4T . . . C 3 10.854 5.377 -10.639 1 38.14 ? C09 T4T 502 A 1 HETATM 7 C C10 T4T . . . C 3 10.544 2.313 -5.415 1 33.2 ? C10 T4T 502 A 1 HETATM 8 C C11 T4T . . . C 3 10.412 6.666 -11.39 1 30.71 ? C11 T4T 502 A 1 HETATM 9 C C12 T4T . . . C 3 10.71 1.204 -4.383 1 22.33 ? C12 T4T 502 A 1 HETATM 10 C C13 T4T . . . C 3 11.273 7.423 -12.432 1 28.17 ? C13 T4T 502 A 1 HETATM 11 C C14 T4T . . . C 3 11.517 1.746 -3.208 1 28.27 ? C14 T4T 502 A 1 HETATM 12 C C15 T4T . . . C 3 10.595 8.789 -12.607 1 28.77 ? C15 T4T 502 A 1 HETATM 13 C C16 T4T . . . C 3 12.511 0.65 -2.887 1 23.91 ? C16 T4T 502 A 1 HETATM 14 C C17 T4T . . . C 3 11.212 9.733 -13.64 1 35.62 ? C17 T4T 502 A 1 HETATM 15 C C18 T4T . . . C 3 14.956 2.118 -3.102 1 17.33 ? C18 T4T 502 A 1 HETATM 16 C C19 T4T . . . C 3 14.979 1.874 -1.613 1 17.08 ? C19 T4T 502 A 1 HETATM 17 O O02 T4T . . . C 3 15.478 0.815 -1.18 1 17.57 -1 O02 T4T 502 A 1 HETATM 18 O O03 T4T . . . C 3 14.538 2.76 -0.858 1 16.92 ? O03 T4T 502 A 1 HETATM 19 S S01 T4T . . . C 3 13.977 0.834 -3.912 1 20 ? S01 T4T 502 A 1 HETATM 20 H H042 T4T . . . C 3 9.208 5.562 -7.02 1 39.8 ? H042 T4T 502 A 1 HETATM 21 H H041 T4T . . . C 3 10.423 4.695 -6.51 1 39.8 ? H041 T4T 502 A 1 HETATM 22 H H052 T4T . . . C 3 10.592 3.575 -8.438 1 35.89 ? H052 T4T 502 A 1 HETATM 23 H H051 T4T . . . C 3 9.054 3.776 -8.789 1 35.89 ? H051 T4T 502 A 1 HETATM 24 H H061 T4T . . . C 3 8.24 3.124 -6.867 1 31.35 ? H061 T4T 502 A 1 HETATM 25 H H062 T4T . . . C 3 7.897 4.303 -5.884 1 31.35 ? H062 T4T 502 A 1 HETATM 26 H H071 T4T . . . C 3 10.79 5.991 -8.671 1 35.02 ? H071 T4T 502 A 1 HETATM 27 H H072 T4T . . . C 3 9.373 5.965 -9.328 1 35.02 ? H072 T4T 502 A 1 HETATM 28 H H082 T4T . . . C 3 8.601 2.307 -4.815 1 32.77 ? H082 T4T 502 A 1 HETATM 29 H H081 T4T . . . C 3 9.375 3.598 -4.358 1 32.77 ? H081 T4T 502 A 1 HETATM 30 H H092 T4T . . . C 3 11.82 5.352 -10.557 1 45.79 ? H092 T4T 502 A 1 HETATM 31 H H091 T4T . . . C 3 10.536 4.59 -11.109 1 45.79 ? H091 T4T 502 A 1 HETATM 32 H H101 T4T . . . C 3 11.272 2.949 -5.341 1 39.85 ? H101 T4T 502 A 1 HETATM 33 H H102 T4T . . . C 3 10.518 1.937 -6.308 1 39.85 ? H102 T4T 502 A 1 HETATM 34 H H112 T4T . . . C 3 10.192 7.314 -10.702 1 36.87 ? H112 T4T 502 A 1 HETATM 35 H H111 T4T . . . C 3 9.582 6.442 -11.84 1 36.87 ? H111 T4T 502 A 1 HETATM 36 H H122 T4T . . . C 3 11.18 0.456 -4.783 1 26.81 ? H122 T4T 502 A 1 HETATM 37 H H121 T4T . . . C 3 9.838 0.914 -4.073 1 26.81 ? H121 T4T 502 A 1 HETATM 38 H H132 T4T . . . C 3 12.177 7.537 -12.101 1 33.82 ? H132 T4T 502 A 1 HETATM 39 H H131 T4T . . . C 3 11.281 6.942 -13.274 1 33.82 ? H131 T4T 502 A 1 HETATM 40 H H142 T4T . . . C 3 10.937 1.91 -2.448 1 33.94 ? H142 T4T 502 A 1 HETATM 41 H H141 T4T . . . C 3 11.981 2.559 -3.463 1 33.94 ? H141 T4T 502 A 1 HETATM 42 H H152 T4T . . . C 3 10.604 9.239 -11.747 1 34.54 ? H152 T4T 502 A 1 HETATM 43 H H151 T4T . . . C 3 9.671 8.635 -12.857 1 34.54 ? H151 T4T 502 A 1 HETATM 44 H H161 T4T . . . C 3 12.763 0.708 -1.952 1 28.71 ? H161 T4T 502 A 1 HETATM 45 H H162 T4T . . . C 3 12.104 -0.214 -3.058 1 28.71 ? H162 T4T 502 A 1 HETATM 46 H H171 T4T . . . C 3 12.106 9.982 -13.358 1 42.76 ? H171 T4T 502 A 1 HETATM 47 H H172 T4T . . . C 3 10.665 10.53 -13.717 1 42.76 ? H172 T4T 502 A 1 HETATM 48 H H173 T4T . . . C 3 11.257 9.287 -14.5 1 42.76 ? H173 T4T 502 A 1 HETATM 49 H H182 T4T . . . C 3 14.562 2.986 -3.281 1 20.81 ? H182 T4T 502 A 1 HETATM 50 H H181 T4T . . . C 3 15.863 2.098 -3.446 1 20.81 ? H181 T4T 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 50 #