data_6KB2
#
_model_server_result.job_id            iwaBQSpr_feOBZ7nTCNWfw 
_model_server_result.datetime_utc      '2024-11-23 12:42:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kb2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    6KB2 
#
_exptl.entry_id    6KB2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              323.798 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-({4-CHLORO-6-[(2,3-DIMETHYLPHENYL)AMINO]PYRIMIDIN-2-YL}SULFANYL)ACETIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.56 
_cell.angle_gamma         90 
_cell.entry_id            6KB2 
_cell.length_a            45.164 
_cell.length_b            62.681 
_cell.length_c            53.667 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KB2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C14 H14 Cl N3 O2 S' 
_chem_comp.formula_weight    323.798 
_chem_comp.id                WY1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-({4-CHLORO-6-[(2,3-DIMETHYLPHENYL)AMINO]PYRIMIDIN-2-YL}SULFANYL)ACETIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAB CAR WY1 sing 348 n n 
CAR CAP WY1 sing 349 n y 
CAR CAT WY1 doub 350 n y 
CAP CAA WY1 sing 351 n n 
CAP CAG WY1 doub 352 n y 
CAG CAF WY1 sing 353 n y 
CAF CAH WY1 doub 354 n y 
CAH CAT WY1 sing 355 n y 
CAT NAM WY1 sing 356 n n 
NAM C4 WY1 sing 357 n n 
C4 N3 WY1 doub 358 n y 
C4 C5 WY1 sing 359 n y 
N3 C2 WY1 sing 360 n y 
C5 C6 WY1 doub 361 n y 
C6 CL6 WY1 sing 362 n n 
C6 N1 WY1 sing 363 n y 
N1 C2 WY1 doub 364 n y 
C2 SAN WY1 sing 365 n n 
SAN CAJ WY1 sing 366 n n 
CAJ CAO WY1 sing 367 n n 
CAO OAC WY1 doub 368 n n 
CAO OAD WY1 sing 369 n n 
CAB HAB1 WY1 sing 370 n n 
CAB HAB2 WY1 sing 371 n n 
CAB HAB3 WY1 sing 372 n n 
CAA HAA1 WY1 sing 373 n n 
CAA HAA2 WY1 sing 374 n n 
CAA HAA3 WY1 sing 375 n n 
CAG HAG WY1 sing 376 n n 
CAF HAF WY1 sing 377 n n 
CAH HAH WY1 sing 378 n n 
NAM HAM WY1 sing 379 n n 
C5 H5 WY1 sing 380 n n 
CAJ HAJ1 WY1 sing 381 n n 
CAJ HAJ2 WY1 sing 382 n n 
OAD HAD WY1 sing 383 n n 
#
_atom_sites.entry_id                     6KB2 
_atom_sites.fract_transf_matrix[1][1]    0.022142 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006165 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015954 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019342 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 WY1 A 1 501 1 WY1 WY1 . 
C 2 WY1 A 1 502 2 WY1 WY1 . 
D 3 HOH A 1 601 22 HOH HOH . 
D 3 HOH A 2 602 9 HOH HOH . 
D 3 HOH A 3 603 6 HOH HOH . 
D 3 HOH A 4 604 20 HOH HOH . 
D 3 HOH A 5 605 33 HOH HOH . 
D 3 HOH A 6 606 26 HOH HOH . 
D 3 HOH A 7 607 19 HOH HOH . 
D 3 HOH A 8 608 17 HOH HOH . 
D 3 HOH A 9 609 3 HOH HOH . 
D 3 HOH A 10 610 21 HOH HOH . 
D 3 HOH A 11 611 32 HOH HOH . 
D 3 HOH A 12 612 16 HOH HOH . 
D 3 HOH A 13 613 12 HOH HOH . 
D 3 HOH A 14 614 7 HOH HOH . 
D 3 HOH A 15 615 34 HOH HOH . 
D 3 HOH A 16 616 23 HOH HOH . 
D 3 HOH A 17 617 10 HOH HOH . 
D 3 HOH A 18 618 2 HOH HOH . 
D 3 HOH A 19 619 27 HOH HOH . 
D 3 HOH A 20 620 8 HOH HOH . 
D 3 HOH A 21 621 36 HOH HOH . 
D 3 HOH A 22 622 13 HOH HOH . 
D 3 HOH A 23 623 38 HOH HOH . 
D 3 HOH A 24 624 15 HOH HOH . 
D 3 HOH A 25 625 11 HOH HOH . 
D 3 HOH A 26 626 1 HOH HOH . 
D 3 HOH A 27 627 31 HOH HOH . 
D 3 HOH A 28 628 18 HOH HOH . 
D 3 HOH A 29 629 25 HOH HOH . 
D 3 HOH A 30 630 37 HOH HOH . 
D 3 HOH A 31 631 24 HOH HOH . 
D 3 HOH A 32 632 14 HOH HOH . 
D 3 HOH A 33 633 30 HOH HOH . 
D 3 HOH A 34 634 4 HOH HOH . 
D 3 HOH A 35 635 5 HOH HOH . 
D 3 HOH A 36 636 35 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAB WY1 . . . B 2 9.164 3.406 -1.175 1 42.52 ? CAB WY1 501 A 1 
HETATM 2 C CAR WY1 . . . B 2 8.579 3.41 -2.58 1 43.73 ? CAR WY1 501 A 1 
HETATM 3 C CAP WY1 . . . B 2 7.273 3.78 -2.876 1 46.78 ? CAP WY1 501 A 1 
HETATM 4 C CAA WY1 . . . B 2 6.284 4.21 -1.803 1 49.77 ? CAA WY1 501 A 1 
HETATM 5 C CAG WY1 . . . B 2 6.84 3.752 -4.196 1 47.43 ? CAG WY1 501 A 1 
HETATM 6 C CAF WY1 . . . B 2 7.693 3.366 -5.209 1 44.85 ? CAF WY1 501 A 1 
HETATM 7 C CAH WY1 . . . B 2 8.994 3.002 -4.911 1 48.07 ? CAH WY1 501 A 1 
HETATM 8 C CAT WY1 . . . B 2 9.419 3.022 -3.592 1 31.62 ? CAT WY1 501 A 1 
HETATM 9 N NAM WY1 . . . B 2 10.769 2.639 -3.235 1 38.2 ? NAM WY1 501 A 1 
HETATM 10 C C4 WY1 . . . B 2 11.288 1.328 -3.58 1 35.86 ? C4 WY1 501 A 1 
HETATM 11 N N3 WY1 . . . B 2 12.587 1.151 -3.521 1 43.3 ? N3 WY1 501 A 1 
HETATM 12 C C5 WY1 . . . B 2 10.495 0.294 -3.954 1 38.89 ? C5 WY1 501 A 1 
HETATM 13 C C6 WY1 . . . B 2 11.065 -0.907 -4.268 1 41.84 ? C6 WY1 501 A 1 
HETATM 14 CL CL6 WY1 . . . B 2 10.072 -2.295 -4.765 1 58.37 ? CL6 WY1 501 A 1 
HETATM 15 N N1 WY1 . . . B 2 12.371 -1.067 -4.21 1 40.17 ? N1 WY1 501 A 1 
HETATM 16 C C2 WY1 . . . B 2 13.137 -0.033 -3.838 1 40.62 ? C2 WY1 501 A 1 
HETATM 17 S SAN WY1 . . . B 2 14.928 -0.174 -3.726 1 39.6 ? SAN WY1 501 A 1 
HETATM 18 C CAJ WY1 . . . B 2 15.468 1.289 -2.791 1 41.81 ? CAJ WY1 501 A 1 
HETATM 19 C CAO WY1 . . . B 2 15.197 1.086 -1.297 1 37.91 ? CAO WY1 501 A 1 
HETATM 20 O OAC WY1 . . . B 2 15.499 -0.005 -0.752 1 41.21 -1 OAC WY1 501 A 1 
HETATM 21 O OAD WY1 . . . B 2 14.688 2.004 -0.597 1 37.26 ? OAD WY1 501 A 1 
HETATM 22 H HAB1 WY1 . . . B 2 8.705 4.065 -0.632 1 51.03 ? HAB1 WY1 501 A 1 
HETATM 23 H HAB2 WY1 . . . B 2 10.109 3.623 -1.218 1 51.03 ? HAB2 WY1 501 A 1 
HETATM 24 H HAB3 WY1 . . . B 2 9.052 2.527 -0.781 1 51.03 ? HAB3 WY1 501 A 1 
HETATM 25 H HAA1 WY1 . . . B 2 5.901 5.069 -2.04 1 59.73 ? HAA1 WY1 501 A 1 
HETATM 26 H HAA2 WY1 . . . B 2 6.742 4.285 -0.951 1 59.73 ? HAA2 WY1 501 A 1 
HETATM 27 H HAA3 WY1 . . . B 2 5.576 3.55 -1.732 1 59.73 ? HAA3 WY1 501 A 1 
HETATM 28 H HAG WY1 . . . B 2 5.967 4 -4.399 1 56.92 ? HAG WY1 501 A 1 
HETATM 29 H HAF WY1 . . . B 2 7.394 3.351 -6.089 1 53.82 ? HAF WY1 501 A 1 
HETATM 30 H HAH WY1 . . . B 2 9.573 2.734 -5.588 1 57.69 ? HAH WY1 501 A 1 
HETATM 31 H HAM WY1 . . . B 2 11.27 3.196 -2.814 1 45.84 ? HAM WY1 501 A 1 
HETATM 32 H H5 WY1 . . . B 2 9.573 0.403 -4.001 1 46.67 ? H5 WY1 501 A 1 
HETATM 33 H HAJ1 WY1 . . . B 2 14.981 2.067 -3.104 1 50.17 ? HAJ1 WY1 501 A 1 
HETATM 34 H HAJ2 WY1 . . . B 2 16.418 1.427 -2.93 1 50.17 ? HAJ2 WY1 501 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#