data_6KB4 # _model_server_result.job_id Q4rqphwVmYScug7YDQrO0A _model_server_result.datetime_utc '2024-11-23 12:18:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kb4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6KB4 # _exptl.entry_id 6KB4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.92 _cell.angle_gamma 90 _cell.entry_id 6KB4 _cell.length_a 44.801 _cell.length_b 61.148 _cell.length_c 53.108 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KB4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6KB4 _atom_sites.fract_transf_matrix[1][1] 0.022321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00679 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 P7F A 1 502 1 P7F P7F . D 4 HOH A 1 601 106 HOH HOH . D 4 HOH A 2 602 125 HOH HOH . D 4 HOH A 3 603 57 HOH HOH . D 4 HOH A 4 604 122 HOH HOH . D 4 HOH A 5 605 141 HOH HOH . D 4 HOH A 6 606 166 HOH HOH . D 4 HOH A 7 607 94 HOH HOH . D 4 HOH A 8 608 22 HOH HOH . D 4 HOH A 9 609 135 HOH HOH . D 4 HOH A 10 610 27 HOH HOH . D 4 HOH A 11 611 159 HOH HOH . D 4 HOH A 12 612 157 HOH HOH . D 4 HOH A 13 613 51 HOH HOH . D 4 HOH A 14 614 77 HOH HOH . D 4 HOH A 15 615 154 HOH HOH . D 4 HOH A 16 616 73 HOH HOH . D 4 HOH A 17 617 158 HOH HOH . D 4 HOH A 18 618 121 HOH HOH . D 4 HOH A 19 619 172 HOH HOH . D 4 HOH A 20 620 165 HOH HOH . D 4 HOH A 21 621 6 HOH HOH . D 4 HOH A 22 622 99 HOH HOH . D 4 HOH A 23 623 139 HOH HOH . D 4 HOH A 24 624 45 HOH HOH . D 4 HOH A 25 625 43 HOH HOH . D 4 HOH A 26 626 47 HOH HOH . D 4 HOH A 27 627 13 HOH HOH . D 4 HOH A 28 628 174 HOH HOH . D 4 HOH A 29 629 173 HOH HOH . D 4 HOH A 30 630 63 HOH HOH . D 4 HOH A 31 631 28 HOH HOH . D 4 HOH A 32 632 60 HOH HOH . D 4 HOH A 33 633 20 HOH HOH . D 4 HOH A 34 634 167 HOH HOH . D 4 HOH A 35 635 84 HOH HOH . D 4 HOH A 36 636 30 HOH HOH . D 4 HOH A 37 637 79 HOH HOH . D 4 HOH A 38 638 70 HOH HOH . D 4 HOH A 39 639 149 HOH HOH . D 4 HOH A 40 640 104 HOH HOH . D 4 HOH A 41 641 53 HOH HOH . D 4 HOH A 42 642 1 HOH HOH . D 4 HOH A 43 643 142 HOH HOH . D 4 HOH A 44 644 87 HOH HOH . D 4 HOH A 45 645 8 HOH HOH . D 4 HOH A 46 646 4 HOH HOH . D 4 HOH A 47 647 132 HOH HOH . D 4 HOH A 48 648 48 HOH HOH . D 4 HOH A 49 649 89 HOH HOH . D 4 HOH A 50 650 160 HOH HOH . D 4 HOH A 51 651 38 HOH HOH . D 4 HOH A 52 652 69 HOH HOH . D 4 HOH A 53 653 25 HOH HOH . D 4 HOH A 54 654 35 HOH HOH . D 4 HOH A 55 655 156 HOH HOH . D 4 HOH A 56 656 97 HOH HOH . D 4 HOH A 57 657 74 HOH HOH . D 4 HOH A 58 658 36 HOH HOH . D 4 HOH A 59 659 15 HOH HOH . D 4 HOH A 60 660 29 HOH HOH . D 4 HOH A 61 661 98 HOH HOH . D 4 HOH A 62 662 81 HOH HOH . D 4 HOH A 63 663 101 HOH HOH . D 4 HOH A 64 664 107 HOH HOH . D 4 HOH A 65 665 32 HOH HOH . D 4 HOH A 66 666 91 HOH HOH . D 4 HOH A 67 667 96 HOH HOH . D 4 HOH A 68 668 40 HOH HOH . D 4 HOH A 69 669 85 HOH HOH . D 4 HOH A 70 670 3 HOH HOH . D 4 HOH A 71 671 24 HOH HOH . D 4 HOH A 72 672 12 HOH HOH . D 4 HOH A 73 673 133 HOH HOH . D 4 HOH A 74 674 58 HOH HOH . D 4 HOH A 75 675 146 HOH HOH . D 4 HOH A 76 676 37 HOH HOH . D 4 HOH A 77 677 2 HOH HOH . D 4 HOH A 78 678 11 HOH HOH . D 4 HOH A 79 679 88 HOH HOH . D 4 HOH A 80 680 23 HOH HOH . D 4 HOH A 81 681 163 HOH HOH . D 4 HOH A 82 682 56 HOH HOH . D 4 HOH A 83 683 46 HOH HOH . D 4 HOH A 84 684 16 HOH HOH . D 4 HOH A 85 685 49 HOH HOH . D 4 HOH A 86 686 61 HOH HOH . D 4 HOH A 87 687 86 HOH HOH . D 4 HOH A 88 688 171 HOH HOH . D 4 HOH A 89 689 33 HOH HOH . D 4 HOH A 90 690 9 HOH HOH . D 4 HOH A 91 691 17 HOH HOH . D 4 HOH A 92 692 95 HOH HOH . D 4 HOH A 93 693 115 HOH HOH . D 4 HOH A 94 694 72 HOH HOH . D 4 HOH A 95 695 41 HOH HOH . D 4 HOH A 96 696 78 HOH HOH . D 4 HOH A 97 697 14 HOH HOH . D 4 HOH A 98 698 21 HOH HOH . D 4 HOH A 99 699 150 HOH HOH . D 4 HOH A 100 700 113 HOH HOH . D 4 HOH A 101 701 5 HOH HOH . D 4 HOH A 102 702 138 HOH HOH . D 4 HOH A 103 703 10 HOH HOH . D 4 HOH A 104 704 7 HOH HOH . D 4 HOH A 105 705 90 HOH HOH . D 4 HOH A 106 706 153 HOH HOH . D 4 HOH A 107 707 44 HOH HOH . D 4 HOH A 108 708 71 HOH HOH . D 4 HOH A 109 709 119 HOH HOH . D 4 HOH A 110 710 161 HOH HOH . D 4 HOH A 111 711 140 HOH HOH . D 4 HOH A 112 712 168 HOH HOH . D 4 HOH A 113 713 76 HOH HOH . D 4 HOH A 114 714 42 HOH HOH . D 4 HOH A 115 715 18 HOH HOH . D 4 HOH A 116 716 75 HOH HOH . D 4 HOH A 117 717 68 HOH HOH . D 4 HOH A 118 718 164 HOH HOH . D 4 HOH A 119 719 83 HOH HOH . D 4 HOH A 120 720 103 HOH HOH . D 4 HOH A 121 721 93 HOH HOH . D 4 HOH A 122 722 50 HOH HOH . D 4 HOH A 123 723 54 HOH HOH . D 4 HOH A 124 724 120 HOH HOH . D 4 HOH A 125 725 169 HOH HOH . D 4 HOH A 126 726 110 HOH HOH . D 4 HOH A 127 727 126 HOH HOH . D 4 HOH A 128 728 67 HOH HOH . D 4 HOH A 129 729 109 HOH HOH . D 4 HOH A 130 730 162 HOH HOH . D 4 HOH A 131 731 31 HOH HOH . D 4 HOH A 132 732 105 HOH HOH . D 4 HOH A 133 733 116 HOH HOH . D 4 HOH A 134 734 102 HOH HOH . D 4 HOH A 135 735 39 HOH HOH . D 4 HOH A 136 736 170 HOH HOH . D 4 HOH A 137 737 144 HOH HOH . D 4 HOH A 138 738 112 HOH HOH . D 4 HOH A 139 739 26 HOH HOH . D 4 HOH A 140 740 52 HOH HOH . D 4 HOH A 141 741 82 HOH HOH . D 4 HOH A 142 742 19 HOH HOH . D 4 HOH A 143 743 123 HOH HOH . D 4 HOH A 144 744 117 HOH HOH . D 4 HOH A 145 745 55 HOH HOH . D 4 HOH A 146 746 118 HOH HOH . D 4 HOH A 147 747 80 HOH HOH . D 4 HOH A 148 748 64 HOH HOH . D 4 HOH A 149 749 66 HOH HOH . D 4 HOH A 150 750 143 HOH HOH . D 4 HOH A 151 751 145 HOH HOH . D 4 HOH A 152 752 134 HOH HOH . D 4 HOH A 153 753 124 HOH HOH . D 4 HOH A 154 754 136 HOH HOH . D 4 HOH A 155 755 155 HOH HOH . D 4 HOH A 156 756 151 HOH HOH . D 4 HOH A 157 757 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -4.846 1.449 -8.379 1 18.41 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 -4.447 0.404 -9.227 1 20.17 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 -4.87 0.95 -6.939 1 15.04 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 -5.239 1.992 -6.061 1 16.16 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 -5.87 -0.205 -6.807 1 19.26 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 -7.154 0.221 -7.178 1 21.83 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . B 2 -4.22 2.186 -8.456 1 22.09 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . B 2 -5.733 1.75 -8.632 1 22.09 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . B 2 -4.509 0.656 -10.037 1 24.21 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . B 2 -3.986 0.632 -6.699 1 18.04 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . B 2 -6.036 2.235 -6.229 1 19.4 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . B 2 -5.887 -0.512 -5.887 1 23.11 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . B 2 -5.595 -0.935 -7.384 1 23.11 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . B 2 -7.704 -0.42 -7.083 1 26.19 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #