data_6KB5 # _model_server_result.job_id 98Bu5YO1ABXatW2CgVEG5Q _model_server_result.datetime_utc '2024-11-23 12:05:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kb5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6KB5 # _exptl.entry_id 6KB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.57 _cell.angle_gamma 90 _cell.entry_id 6KB5 _cell.length_a 44.855 _cell.length_b 61.719 _cell.length_c 53.245 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6KB5 _atom_sites.fract_transf_matrix[1][1] 0.022294 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006633 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019595 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 ITY A 1 502 1 ITY ITY . D 4 HOH A 1 601 22 HOH HOH . D 4 HOH A 2 602 83 HOH HOH . D 4 HOH A 3 603 30 HOH HOH . D 4 HOH A 4 604 71 HOH HOH . D 4 HOH A 5 605 21 HOH HOH . D 4 HOH A 6 606 89 HOH HOH . D 4 HOH A 7 607 40 HOH HOH . D 4 HOH A 8 608 41 HOH HOH . D 4 HOH A 9 609 42 HOH HOH . D 4 HOH A 10 610 86 HOH HOH . D 4 HOH A 11 611 56 HOH HOH . D 4 HOH A 12 612 27 HOH HOH . D 4 HOH A 13 613 11 HOH HOH . D 4 HOH A 14 614 20 HOH HOH . D 4 HOH A 15 615 44 HOH HOH . D 4 HOH A 16 616 53 HOH HOH . D 4 HOH A 17 617 95 HOH HOH . D 4 HOH A 18 618 43 HOH HOH . D 4 HOH A 19 619 74 HOH HOH . D 4 HOH A 20 620 26 HOH HOH . D 4 HOH A 21 621 15 HOH HOH . D 4 HOH A 22 622 51 HOH HOH . D 4 HOH A 23 623 9 HOH HOH . D 4 HOH A 24 624 58 HOH HOH . D 4 HOH A 25 625 34 HOH HOH . D 4 HOH A 26 626 1 HOH HOH . D 4 HOH A 27 627 36 HOH HOH . D 4 HOH A 28 628 3 HOH HOH . D 4 HOH A 29 629 65 HOH HOH . D 4 HOH A 30 630 97 HOH HOH . D 4 HOH A 31 631 112 HOH HOH . D 4 HOH A 32 632 62 HOH HOH . D 4 HOH A 33 633 87 HOH HOH . D 4 HOH A 34 634 18 HOH HOH . D 4 HOH A 35 635 94 HOH HOH . D 4 HOH A 36 636 106 HOH HOH . D 4 HOH A 37 637 110 HOH HOH . D 4 HOH A 38 638 6 HOH HOH . D 4 HOH A 39 639 101 HOH HOH . D 4 HOH A 40 640 49 HOH HOH . D 4 HOH A 41 641 23 HOH HOH . D 4 HOH A 42 642 75 HOH HOH . D 4 HOH A 43 643 64 HOH HOH . D 4 HOH A 44 644 57 HOH HOH . D 4 HOH A 45 645 100 HOH HOH . D 4 HOH A 46 646 77 HOH HOH . D 4 HOH A 47 647 25 HOH HOH . D 4 HOH A 48 648 103 HOH HOH . D 4 HOH A 49 649 46 HOH HOH . D 4 HOH A 50 650 37 HOH HOH . D 4 HOH A 51 651 16 HOH HOH . D 4 HOH A 52 652 80 HOH HOH . D 4 HOH A 53 653 7 HOH HOH . D 4 HOH A 54 654 31 HOH HOH . D 4 HOH A 55 655 38 HOH HOH . D 4 HOH A 56 656 79 HOH HOH . D 4 HOH A 57 657 111 HOH HOH . D 4 HOH A 58 658 32 HOH HOH . D 4 HOH A 59 659 59 HOH HOH . D 4 HOH A 60 660 5 HOH HOH . D 4 HOH A 61 661 14 HOH HOH . D 4 HOH A 62 662 47 HOH HOH . D 4 HOH A 63 663 70 HOH HOH . D 4 HOH A 64 664 29 HOH HOH . D 4 HOH A 65 665 102 HOH HOH . D 4 HOH A 66 666 61 HOH HOH . D 4 HOH A 67 667 39 HOH HOH . D 4 HOH A 68 668 54 HOH HOH . D 4 HOH A 69 669 28 HOH HOH . D 4 HOH A 70 670 104 HOH HOH . D 4 HOH A 71 671 24 HOH HOH . D 4 HOH A 72 672 35 HOH HOH . D 4 HOH A 73 673 69 HOH HOH . D 4 HOH A 74 674 13 HOH HOH . D 4 HOH A 75 675 10 HOH HOH . D 4 HOH A 76 676 2 HOH HOH . D 4 HOH A 77 677 93 HOH HOH . D 4 HOH A 78 678 72 HOH HOH . D 4 HOH A 79 679 73 HOH HOH . D 4 HOH A 80 680 19 HOH HOH . D 4 HOH A 81 681 88 HOH HOH . D 4 HOH A 82 682 52 HOH HOH . D 4 HOH A 83 683 76 HOH HOH . D 4 HOH A 84 684 113 HOH HOH . D 4 HOH A 85 685 109 HOH HOH . D 4 HOH A 86 686 99 HOH HOH . D 4 HOH A 87 687 67 HOH HOH . D 4 HOH A 88 688 12 HOH HOH . D 4 HOH A 89 689 68 HOH HOH . D 4 HOH A 90 690 8 HOH HOH . D 4 HOH A 91 691 4 HOH HOH . D 4 HOH A 92 692 50 HOH HOH . D 4 HOH A 93 693 84 HOH HOH . D 4 HOH A 94 694 91 HOH HOH . D 4 HOH A 95 695 82 HOH HOH . D 4 HOH A 96 696 45 HOH HOH . D 4 HOH A 97 697 108 HOH HOH . D 4 HOH A 98 698 60 HOH HOH . D 4 HOH A 99 699 17 HOH HOH . D 4 HOH A 100 700 107 HOH HOH . D 4 HOH A 101 701 96 HOH HOH . D 4 HOH A 102 702 92 HOH HOH . D 4 HOH A 103 703 90 HOH HOH . D 4 HOH A 104 704 66 HOH HOH . D 4 HOH A 105 705 98 HOH HOH . D 4 HOH A 106 706 105 HOH HOH . D 4 HOH A 107 707 81 HOH HOH . D 4 HOH A 108 708 63 HOH HOH . D 4 HOH A 109 709 78 HOH HOH . D 4 HOH A 110 710 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -4.607 0.24 -8.128 1 25.23 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 -4.691 -0.954 -8.857 1 28.62 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 -4.957 0.001 -6.66 1 28.31 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 -5.681 1.105 -6.188 1 40.15 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 -5.797 -1.268 -6.492 1 36.93 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 -7.041 -1.106 -7.12 1 39.33 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . B 2 -3.704 0.588 -8.188 1 30.17 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . B 2 -5.225 0.887 -8.502 1 30.17 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . B 2 -4.66 -0.781 -9.688 1 34.24 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . B 2 -4.139 -0.088 -6.146 1 33.87 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . B 2 -5.218 1.522 -5.611 1 48.08 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . B 2 -5.934 -1.441 -5.548 1 44.22 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . B 2 -5.33 -2.018 -6.892 1 44.22 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . B 2 -7.45 -1.851 -7.135 1 47.09 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #