data_6KB5
#
_model_server_result.job_id            RVSwWG8goOT5tk_jJnKA0w 
_model_server_result.datetime_utc      '2024-11-23 12:15:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kb5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    6KB5 
#
_exptl.entry_id    6KB5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              296.403 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'icosa-5,8,11,14-tetraynoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.57 
_cell.angle_gamma         90 
_cell.entry_id            6KB5 
_cell.length_a            44.855 
_cell.length_b            61.719 
_cell.length_c            53.245 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KB5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H24 O2' 
_chem_comp.formula_weight    296.403 
_chem_comp.id                ITY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'icosa-5,8,11,14-tetraynoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '5,8,11,14-eicosatetraynoic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C07 C05 ITY sing 186 n n 
C03 C05 ITY sing 187 n n 
C03 C04 ITY sing 188 n n 
C04 C06 ITY sing 189 n n 
C06 C10 ITY sing 190 n n 
C10 C13 ITY trip 191 n n 
C13 C15 ITY sing 192 n n 
C15 C18 ITY sing 193 n n 
C18 C21 ITY trip 194 n n 
C21 C19 ITY sing 195 n n 
C19 C22 ITY sing 196 n n 
C22 C20 ITY trip 197 n n 
C20 C17 ITY sing 198 n n 
C08 C11 ITY sing 199 n n 
C08 C09 ITY sing 200 n n 
C11 C14 ITY sing 201 n n 
C14 C16 ITY trip 202 n n 
C16 C17 ITY sing 203 n n 
C09 C12 ITY sing 204 n n 
C12 O01 ITY doub 205 n n 
C12 O02 ITY sing 206 n n 
C03 H032 ITY sing 207 n n 
C03 H031 ITY sing 208 n n 
C04 H041 ITY sing 209 n n 
C04 H042 ITY sing 210 n n 
C05 H051 ITY sing 211 n n 
C05 H052 ITY sing 212 n n 
C06 H062 ITY sing 213 n n 
C06 H061 ITY sing 214 n n 
C07 H071 ITY sing 215 n n 
C07 H073 ITY sing 216 n n 
C07 H072 ITY sing 217 n n 
C08 H082 ITY sing 218 n n 
C08 H081 ITY sing 219 n n 
C09 H091 ITY sing 220 n n 
C09 H092 ITY sing 221 n n 
C11 H112 ITY sing 222 n n 
C11 H111 ITY sing 223 n n 
C15 H152 ITY sing 224 n n 
C15 H151 ITY sing 225 n n 
C17 H171 ITY sing 226 n n 
C17 H172 ITY sing 227 n n 
C19 H191 ITY sing 228 n n 
C19 H192 ITY sing 229 n n 
O02 H1 ITY sing 230 n n 
#
_atom_sites.entry_id                     6KB5 
_atom_sites.fract_transf_matrix[1][1]    0.022294 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006633 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016202 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019595 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 501 1 GOL GOL . 
C 3 ITY A 1 502 1 ITY ITY . 
D 4 HOH A 1 601 22 HOH HOH . 
D 4 HOH A 2 602 83 HOH HOH . 
D 4 HOH A 3 603 30 HOH HOH . 
D 4 HOH A 4 604 71 HOH HOH . 
D 4 HOH A 5 605 21 HOH HOH . 
D 4 HOH A 6 606 89 HOH HOH . 
D 4 HOH A 7 607 40 HOH HOH . 
D 4 HOH A 8 608 41 HOH HOH . 
D 4 HOH A 9 609 42 HOH HOH . 
D 4 HOH A 10 610 86 HOH HOH . 
D 4 HOH A 11 611 56 HOH HOH . 
D 4 HOH A 12 612 27 HOH HOH . 
D 4 HOH A 13 613 11 HOH HOH . 
D 4 HOH A 14 614 20 HOH HOH . 
D 4 HOH A 15 615 44 HOH HOH . 
D 4 HOH A 16 616 53 HOH HOH . 
D 4 HOH A 17 617 95 HOH HOH . 
D 4 HOH A 18 618 43 HOH HOH . 
D 4 HOH A 19 619 74 HOH HOH . 
D 4 HOH A 20 620 26 HOH HOH . 
D 4 HOH A 21 621 15 HOH HOH . 
D 4 HOH A 22 622 51 HOH HOH . 
D 4 HOH A 23 623 9 HOH HOH . 
D 4 HOH A 24 624 58 HOH HOH . 
D 4 HOH A 25 625 34 HOH HOH . 
D 4 HOH A 26 626 1 HOH HOH . 
D 4 HOH A 27 627 36 HOH HOH . 
D 4 HOH A 28 628 3 HOH HOH . 
D 4 HOH A 29 629 65 HOH HOH . 
D 4 HOH A 30 630 97 HOH HOH . 
D 4 HOH A 31 631 112 HOH HOH . 
D 4 HOH A 32 632 62 HOH HOH . 
D 4 HOH A 33 633 87 HOH HOH . 
D 4 HOH A 34 634 18 HOH HOH . 
D 4 HOH A 35 635 94 HOH HOH . 
D 4 HOH A 36 636 106 HOH HOH . 
D 4 HOH A 37 637 110 HOH HOH . 
D 4 HOH A 38 638 6 HOH HOH . 
D 4 HOH A 39 639 101 HOH HOH . 
D 4 HOH A 40 640 49 HOH HOH . 
D 4 HOH A 41 641 23 HOH HOH . 
D 4 HOH A 42 642 75 HOH HOH . 
D 4 HOH A 43 643 64 HOH HOH . 
D 4 HOH A 44 644 57 HOH HOH . 
D 4 HOH A 45 645 100 HOH HOH . 
D 4 HOH A 46 646 77 HOH HOH . 
D 4 HOH A 47 647 25 HOH HOH . 
D 4 HOH A 48 648 103 HOH HOH . 
D 4 HOH A 49 649 46 HOH HOH . 
D 4 HOH A 50 650 37 HOH HOH . 
D 4 HOH A 51 651 16 HOH HOH . 
D 4 HOH A 52 652 80 HOH HOH . 
D 4 HOH A 53 653 7 HOH HOH . 
D 4 HOH A 54 654 31 HOH HOH . 
D 4 HOH A 55 655 38 HOH HOH . 
D 4 HOH A 56 656 79 HOH HOH . 
D 4 HOH A 57 657 111 HOH HOH . 
D 4 HOH A 58 658 32 HOH HOH . 
D 4 HOH A 59 659 59 HOH HOH . 
D 4 HOH A 60 660 5 HOH HOH . 
D 4 HOH A 61 661 14 HOH HOH . 
D 4 HOH A 62 662 47 HOH HOH . 
D 4 HOH A 63 663 70 HOH HOH . 
D 4 HOH A 64 664 29 HOH HOH . 
D 4 HOH A 65 665 102 HOH HOH . 
D 4 HOH A 66 666 61 HOH HOH . 
D 4 HOH A 67 667 39 HOH HOH . 
D 4 HOH A 68 668 54 HOH HOH . 
D 4 HOH A 69 669 28 HOH HOH . 
D 4 HOH A 70 670 104 HOH HOH . 
D 4 HOH A 71 671 24 HOH HOH . 
D 4 HOH A 72 672 35 HOH HOH . 
D 4 HOH A 73 673 69 HOH HOH . 
D 4 HOH A 74 674 13 HOH HOH . 
D 4 HOH A 75 675 10 HOH HOH . 
D 4 HOH A 76 676 2 HOH HOH . 
D 4 HOH A 77 677 93 HOH HOH . 
D 4 HOH A 78 678 72 HOH HOH . 
D 4 HOH A 79 679 73 HOH HOH . 
D 4 HOH A 80 680 19 HOH HOH . 
D 4 HOH A 81 681 88 HOH HOH . 
D 4 HOH A 82 682 52 HOH HOH . 
D 4 HOH A 83 683 76 HOH HOH . 
D 4 HOH A 84 684 113 HOH HOH . 
D 4 HOH A 85 685 109 HOH HOH . 
D 4 HOH A 86 686 99 HOH HOH . 
D 4 HOH A 87 687 67 HOH HOH . 
D 4 HOH A 88 688 12 HOH HOH . 
D 4 HOH A 89 689 68 HOH HOH . 
D 4 HOH A 90 690 8 HOH HOH . 
D 4 HOH A 91 691 4 HOH HOH . 
D 4 HOH A 92 692 50 HOH HOH . 
D 4 HOH A 93 693 84 HOH HOH . 
D 4 HOH A 94 694 91 HOH HOH . 
D 4 HOH A 95 695 82 HOH HOH . 
D 4 HOH A 96 696 45 HOH HOH . 
D 4 HOH A 97 697 108 HOH HOH . 
D 4 HOH A 98 698 60 HOH HOH . 
D 4 HOH A 99 699 17 HOH HOH . 
D 4 HOH A 100 700 107 HOH HOH . 
D 4 HOH A 101 701 96 HOH HOH . 
D 4 HOH A 102 702 92 HOH HOH . 
D 4 HOH A 103 703 90 HOH HOH . 
D 4 HOH A 104 704 66 HOH HOH . 
D 4 HOH A 105 705 98 HOH HOH . 
D 4 HOH A 106 706 105 HOH HOH . 
D 4 HOH A 107 707 81 HOH HOH . 
D 4 HOH A 108 708 63 HOH HOH . 
D 4 HOH A 109 709 78 HOH HOH . 
D 4 HOH A 110 710 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C03 ITY . . . C 3 10.843 9.022 -13.545 1 33.85 ? C03 ITY 502 A 1 
HETATM 2 C C04 ITY . . . C 3 10.48 8.005 -12.467 1 32.01 ? C04 ITY 502 A 1 
HETATM 3 C C05 ITY . . . C 3 10.325 10.408 -13.17 1 32.59 ? C05 ITY 502 A 1 
HETATM 4 C C06 ITY . . . C 3 11.391 6.798 -12.662 1 31.96 ? C06 ITY 502 A 1 
HETATM 5 C C07 ITY . . . C 3 10.476 11.32 -14.385 1 38.95 ? C07 ITY 502 A 1 
HETATM 6 C C08 ITY . . . C 3 13.926 0.735 -3.969 1 26.94 ? C08 ITY 502 A 1 
HETATM 7 C C09 ITY . . . C 3 14.443 1.985 -3.253 1 24.04 ? C09 ITY 502 A 1 
HETATM 8 C C10 ITY . . . C 3 11.021 5.643 -11.734 1 30.05 ? C10 ITY 502 A 1 
HETATM 9 C C11 ITY . . . C 3 12.688 0.159 -3.278 1 22.86 ? C11 ITY 502 A 1 
HETATM 10 C C12 ITY . . . C 3 14.713 1.694 -1.78 1 26.56 ? C12 ITY 502 A 1 
HETATM 11 C C13 ITY . . . C 3 10.769 4.707 -11.05 1 33.11 ? C13 ITY 502 A 1 
HETATM 12 C C14 ITY . . . C 3 11.591 1.214 -3.197 1 22.1 ? C14 ITY 502 A 1 
HETATM 13 C C15 ITY . . . C 3 10.428 3.477 -10.21 1 35.61 ? C15 ITY 502 A 1 
HETATM 14 C C16 ITY . . . C 3 10.743 2.035 -3.122 1 21.65 ? C16 ITY 502 A 1 
HETATM 15 C C17 ITY . . . C 3 9.666 3.11 -3 1 28.12 ? C17 ITY 502 A 1 
HETATM 16 C C18 ITY . . . C 3 9.712 3.874 -8.92 1 30.52 ? C18 ITY 502 A 1 
HETATM 17 C C19 ITY . . . C 3 8.297 4.601 -6.721 1 26.19 ? C19 ITY 502 A 1 
HETATM 18 C C20 ITY . . . C 3 9.208 3.581 -4.379 1 20.1 ? C20 ITY 502 A 1 
HETATM 19 C C21 ITY . . . C 3 9.116 4.174 -7.937 1 24.13 ? C21 ITY 502 A 1 
HETATM 20 C C22 ITY . . . C 3 8.812 3.994 -5.419 1 18.52 ? C22 ITY 502 A 1 
HETATM 21 O O01 ITY . . . C 3 14.37 2.531 -0.905 1 22.58 -1 O01 ITY 502 A 1 
HETATM 22 O O02 ITY . . . C 3 15.276 0.619 -1.441 1 29.56 ? O02 ITY 502 A 1 
HETATM 23 H H032 ITY . . . C 3 11.807 9.056 -13.641 1 40.51 ? H032 ITY 502 A 1 
HETATM 24 H H031 ITY . . . C 3 10.446 8.75 -14.388 1 40.51 ? H031 ITY 502 A 1 
HETATM 25 H H041 ITY . . . C 3 10.625 8.39 -11.588 1 38.31 ? H041 ITY 502 A 1 
HETATM 26 H H042 ITY . . . C 3 9.553 7.738 -12.563 1 38.31 ? H042 ITY 502 A 1 
HETATM 27 H H051 ITY . . . C 3 10.843 10.761 -12.43 1 39.01 ? H051 ITY 502 A 1 
HETATM 28 H H052 ITY . . . C 3 9.39 10.351 -12.918 1 39.01 ? H052 ITY 502 A 1 
HETATM 29 H H062 ITY . . . C 3 12.307 7.063 -12.484 1 38.25 ? H062 ITY 502 A 1 
HETATM 30 H H061 ITY . . . C 3 11.323 6.497 -13.581 1 38.25 ? H061 ITY 502 A 1 
HETATM 31 H H071 ITY . . . C 3 11.409 11.361 -14.645 1 46.64 ? H071 ITY 502 A 1 
HETATM 32 H H073 ITY . . . C 3 9.95 10.969 -15.12 1 46.64 ? H073 ITY 502 A 1 
HETATM 33 H H072 ITY . . . C 3 10.163 12.211 -14.161 1 46.64 ? H072 ITY 502 A 1 
HETATM 34 H H082 ITY . . . C 3 13.699 0.966 -4.883 1 32.23 ? H082 ITY 502 A 1 
HETATM 35 H H081 ITY . . . C 3 14.625 0.063 -3.977 1 32.23 ? H081 ITY 502 A 1 
HETATM 36 H H091 ITY . . . C 3 13.781 2.689 -3.322 1 28.75 ? H091 ITY 502 A 1 
HETATM 37 H H092 ITY . . . C 3 15.266 2.277 -3.676 1 28.75 ? H092 ITY 502 A 1 
HETATM 38 H H112 ITY . . . C 3 12.925 -0.128 -2.382 1 27.33 ? H112 ITY 502 A 1 
HETATM 39 H H111 ITY . . . C 3 12.364 -0.603 -3.784 1 27.33 ? H111 ITY 502 A 1 
HETATM 40 H H152 ITY . . . C 3 11.247 3.006 -9.988 1 42.63 ? H152 ITY 502 A 1 
HETATM 41 H H151 ITY . . . C 3 9.853 2.89 -10.725 1 42.63 ? H151 ITY 502 A 1 
HETATM 42 H H171 ITY . . . C 3 8.906 2.746 -2.519 1 33.64 ? H171 ITY 502 A 1 
HETATM 43 H H172 ITY . . . C 3 10.024 3.865 -2.507 1 33.64 ? H172 ITY 502 A 1 
HETATM 44 H H191 ITY . . . C 3 7.376 4.325 -6.851 1 31.32 ? H191 ITY 502 A 1 
HETATM 45 H H192 ITY . . . C 3 8.327 5.568 -6.648 1 31.32 ? H192 ITY 502 A 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           45 
#