data_6KB6 # _model_server_result.job_id U-tDEyy1Z8Z4UsP95yWvtw _model_server_result.datetime_utc '2024-10-31 00:25:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kb6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6KB6 # _exptl.entry_id 6KB6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-tetradecylsulfanylethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.47 _cell.angle_gamma 90 _cell.entry_id 6KB6 _cell.length_a 44.755 _cell.length_b 61.391 _cell.length_c 52.941 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KB6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H32 O2 S' _chem_comp.formula_weight 288.489 _chem_comp.id T4T _chem_comp.mon_nstd_flag . _chem_comp.name '2-tetradecylsulfanylethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C15 T4T sing 303 n n C15 C13 T4T sing 304 n n C13 C11 T4T sing 305 n n C11 C09 T4T sing 306 n n C09 C07 T4T sing 307 n n C07 C05 T4T sing 308 n n C05 C04 T4T sing 309 n n C04 C06 T4T sing 310 n n C06 C08 T4T sing 311 n n C08 C10 T4T sing 312 n n C10 C12 T4T sing 313 n n C12 C14 T4T sing 314 n n S01 C18 T4T sing 315 n n S01 C16 T4T sing 316 n n C14 C16 T4T sing 317 n n C18 C19 T4T sing 318 n n C19 O02 T4T doub 319 n n C19 O03 T4T sing 320 n n C04 H042 T4T sing 321 n n C04 H041 T4T sing 322 n n C05 H052 T4T sing 323 n n C05 H051 T4T sing 324 n n C06 H061 T4T sing 325 n n C06 H062 T4T sing 326 n n C07 H071 T4T sing 327 n n C07 H072 T4T sing 328 n n C08 H082 T4T sing 329 n n C08 H081 T4T sing 330 n n C09 H092 T4T sing 331 n n C09 H091 T4T sing 332 n n C10 H101 T4T sing 333 n n C10 H102 T4T sing 334 n n C11 H112 T4T sing 335 n n C11 H111 T4T sing 336 n n C12 H122 T4T sing 337 n n C12 H121 T4T sing 338 n n C13 H132 T4T sing 339 n n C13 H131 T4T sing 340 n n C14 H142 T4T sing 341 n n C14 H141 T4T sing 342 n n C15 H152 T4T sing 343 n n C15 H151 T4T sing 344 n n C16 H161 T4T sing 345 n n C16 H162 T4T sing 346 n n C17 H171 T4T sing 347 n n C17 H172 T4T sing 348 n n C17 H173 T4T sing 349 n n C18 H182 T4T sing 350 n n C18 H181 T4T sing 351 n n O03 H1 T4T sing 352 n n # _atom_sites.entry_id 6KB6 _atom_sites.fract_transf_matrix[1][1] 0.022344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006606 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 T4T A 1 502 1 T4T T4T . D 4 HOH A 1 601 171 HOH HOH . D 4 HOH A 2 602 159 HOH HOH . D 4 HOH A 3 603 99 HOH HOH . D 4 HOH A 4 604 180 HOH HOH . D 4 HOH A 5 605 113 HOH HOH . D 4 HOH A 6 606 173 HOH HOH . D 4 HOH A 7 607 106 HOH HOH . D 4 HOH A 8 608 43 HOH HOH . D 4 HOH A 9 609 116 HOH HOH . D 4 HOH A 10 610 148 HOH HOH . D 4 HOH A 11 611 89 HOH HOH . D 4 HOH A 12 612 64 HOH HOH . D 4 HOH A 13 613 169 HOH HOH . D 4 HOH A 14 614 92 HOH HOH . D 4 HOH A 15 615 152 HOH HOH . D 4 HOH A 16 616 181 HOH HOH . D 4 HOH A 17 617 158 HOH HOH . D 4 HOH A 18 618 189 HOH HOH . D 4 HOH A 19 619 30 HOH HOH . D 4 HOH A 20 620 76 HOH HOH . D 4 HOH A 21 621 177 HOH HOH . D 4 HOH A 22 622 39 HOH HOH . D 4 HOH A 23 623 120 HOH HOH . D 4 HOH A 24 624 117 HOH HOH . D 4 HOH A 25 625 53 HOH HOH . D 4 HOH A 26 626 94 HOH HOH . D 4 HOH A 27 627 108 HOH HOH . D 4 HOH A 28 628 161 HOH HOH . D 4 HOH A 29 629 179 HOH HOH . D 4 HOH A 30 630 77 HOH HOH . D 4 HOH A 31 631 5 HOH HOH . D 4 HOH A 32 632 170 HOH HOH . D 4 HOH A 33 633 3 HOH HOH . D 4 HOH A 34 634 182 HOH HOH . D 4 HOH A 35 635 183 HOH HOH . D 4 HOH A 36 636 52 HOH HOH . D 4 HOH A 37 637 96 HOH HOH . D 4 HOH A 38 638 149 HOH HOH . D 4 HOH A 39 639 49 HOH HOH . D 4 HOH A 40 640 132 HOH HOH . D 4 HOH A 41 641 10 HOH HOH . D 4 HOH A 42 642 176 HOH HOH . D 4 HOH A 43 643 136 HOH HOH . D 4 HOH A 44 644 38 HOH HOH . D 4 HOH A 45 645 196 HOH HOH . D 4 HOH A 46 646 72 HOH HOH . D 4 HOH A 47 647 172 HOH HOH . D 4 HOH A 48 648 54 HOH HOH . D 4 HOH A 49 649 191 HOH HOH . D 4 HOH A 50 650 163 HOH HOH . D 4 HOH A 51 651 142 HOH HOH . D 4 HOH A 52 652 47 HOH HOH . D 4 HOH A 53 653 84 HOH HOH . D 4 HOH A 54 654 126 HOH HOH . D 4 HOH A 55 655 58 HOH HOH . D 4 HOH A 56 656 45 HOH HOH . D 4 HOH A 57 657 154 HOH HOH . D 4 HOH A 58 658 40 HOH HOH . D 4 HOH A 59 659 66 HOH HOH . D 4 HOH A 60 660 61 HOH HOH . D 4 HOH A 61 661 7 HOH HOH . D 4 HOH A 62 662 118 HOH HOH . D 4 HOH A 63 663 114 HOH HOH . D 4 HOH A 64 664 4 HOH HOH . D 4 HOH A 65 665 48 HOH HOH . D 4 HOH A 66 666 184 HOH HOH . D 4 HOH A 67 667 41 HOH HOH . D 4 HOH A 68 668 42 HOH HOH . D 4 HOH A 69 669 174 HOH HOH . D 4 HOH A 70 670 81 HOH HOH . D 4 HOH A 71 671 59 HOH HOH . D 4 HOH A 72 672 138 HOH HOH . D 4 HOH A 73 673 14 HOH HOH . D 4 HOH A 74 674 193 HOH HOH . D 4 HOH A 75 675 110 HOH HOH . D 4 HOH A 76 676 157 HOH HOH . D 4 HOH A 77 677 44 HOH HOH . D 4 HOH A 78 678 8 HOH HOH . D 4 HOH A 79 679 33 HOH HOH . D 4 HOH A 80 680 135 HOH HOH . D 4 HOH A 81 681 36 HOH HOH . D 4 HOH A 82 682 91 HOH HOH . D 4 HOH A 83 683 28 HOH HOH . D 4 HOH A 84 684 74 HOH HOH . D 4 HOH A 85 685 125 HOH HOH . D 4 HOH A 86 686 22 HOH HOH . D 4 HOH A 87 687 9 HOH HOH . D 4 HOH A 88 688 6 HOH HOH . D 4 HOH A 89 689 88 HOH HOH . D 4 HOH A 90 690 26 HOH HOH . D 4 HOH A 91 691 156 HOH HOH . D 4 HOH A 92 692 25 HOH HOH . D 4 HOH A 93 693 17 HOH HOH . D 4 HOH A 94 694 23 HOH HOH . D 4 HOH A 95 695 21 HOH HOH . D 4 HOH A 96 696 51 HOH HOH . D 4 HOH A 97 697 56 HOH HOH . D 4 HOH A 98 698 15 HOH HOH . D 4 HOH A 99 699 57 HOH HOH . D 4 HOH A 100 700 128 HOH HOH . D 4 HOH A 101 701 50 HOH HOH . D 4 HOH A 102 702 124 HOH HOH . D 4 HOH A 103 703 186 HOH HOH . D 4 HOH A 104 704 80 HOH HOH . D 4 HOH A 105 705 133 HOH HOH . D 4 HOH A 106 706 20 HOH HOH . D 4 HOH A 107 707 95 HOH HOH . D 4 HOH A 108 708 151 HOH HOH . D 4 HOH A 109 709 29 HOH HOH . D 4 HOH A 110 710 121 HOH HOH . D 4 HOH A 111 711 2 HOH HOH . D 4 HOH A 112 712 160 HOH HOH . D 4 HOH A 113 713 13 HOH HOH . D 4 HOH A 114 714 187 HOH HOH . D 4 HOH A 115 715 119 HOH HOH . D 4 HOH A 116 716 107 HOH HOH . D 4 HOH A 117 717 73 HOH HOH . D 4 HOH A 118 718 71 HOH HOH . D 4 HOH A 119 719 12 HOH HOH . D 4 HOH A 120 720 65 HOH HOH . D 4 HOH A 121 721 16 HOH HOH . D 4 HOH A 122 722 175 HOH HOH . D 4 HOH A 123 723 62 HOH HOH . D 4 HOH A 124 724 34 HOH HOH . D 4 HOH A 125 725 63 HOH HOH . D 4 HOH A 126 726 1 HOH HOH . D 4 HOH A 127 727 86 HOH HOH . D 4 HOH A 128 728 122 HOH HOH . D 4 HOH A 129 729 82 HOH HOH . D 4 HOH A 130 730 75 HOH HOH . D 4 HOH A 131 731 139 HOH HOH . D 4 HOH A 132 732 19 HOH HOH . D 4 HOH A 133 733 87 HOH HOH . D 4 HOH A 134 734 109 HOH HOH . D 4 HOH A 135 735 115 HOH HOH . D 4 HOH A 136 736 165 HOH HOH . D 4 HOH A 137 737 198 HOH HOH . D 4 HOH A 138 738 178 HOH HOH . D 4 HOH A 139 739 24 HOH HOH . D 4 HOH A 140 740 18 HOH HOH . D 4 HOH A 141 741 164 HOH HOH . D 4 HOH A 142 742 166 HOH HOH . D 4 HOH A 143 743 168 HOH HOH . D 4 HOH A 144 744 70 HOH HOH . D 4 HOH A 145 745 97 HOH HOH . D 4 HOH A 146 746 46 HOH HOH . D 4 HOH A 147 747 60 HOH HOH . D 4 HOH A 148 748 69 HOH HOH . D 4 HOH A 149 749 145 HOH HOH . D 4 HOH A 150 750 31 HOH HOH . D 4 HOH A 151 751 134 HOH HOH . D 4 HOH A 152 752 167 HOH HOH . D 4 HOH A 153 753 153 HOH HOH . D 4 HOH A 154 754 11 HOH HOH . D 4 HOH A 155 755 37 HOH HOH . D 4 HOH A 156 756 112 HOH HOH . D 4 HOH A 157 757 190 HOH HOH . D 4 HOH A 158 758 194 HOH HOH . D 4 HOH A 159 759 78 HOH HOH . D 4 HOH A 160 760 130 HOH HOH . D 4 HOH A 161 761 111 HOH HOH . D 4 HOH A 162 762 27 HOH HOH . D 4 HOH A 163 763 68 HOH HOH . D 4 HOH A 164 764 127 HOH HOH . D 4 HOH A 165 765 162 HOH HOH . D 4 HOH A 166 766 129 HOH HOH . D 4 HOH A 167 767 144 HOH HOH . D 4 HOH A 168 768 35 HOH HOH . D 4 HOH A 169 769 146 HOH HOH . D 4 HOH A 170 770 32 HOH HOH . D 4 HOH A 171 771 188 HOH HOH . D 4 HOH A 172 772 83 HOH HOH . D 4 HOH A 173 773 192 HOH HOH . D 4 HOH A 174 774 100 HOH HOH . D 4 HOH A 175 775 102 HOH HOH . D 4 HOH A 176 776 79 HOH HOH . D 4 HOH A 177 777 199 HOH HOH . D 4 HOH A 178 778 185 HOH HOH . D 4 HOH A 179 779 101 HOH HOH . D 4 HOH A 180 780 197 HOH HOH . D 4 HOH A 181 781 140 HOH HOH . D 4 HOH A 182 782 98 HOH HOH . D 4 HOH A 183 783 90 HOH HOH . D 4 HOH A 184 784 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C04 T4T . . . C 3 9.669 4.392 -7.995 1 23.64 ? C04 T4T 502 A 1 HETATM 2 C C05 T4T . . . C 3 10.166 5.581 -8.827 1 18.97 ? C05 T4T 502 A 1 HETATM 3 C C06 T4T . . . C 3 9.115 4.832 -6.632 1 29.87 ? C06 T4T 502 A 1 HETATM 4 C C07 T4T . . . C 3 10.419 5.091 -10.256 1 25.96 ? C07 T4T 502 A 1 HETATM 5 C C08 T4T . . . C 3 8.965 3.661 -5.642 1 21.8 ? C08 T4T 502 A 1 HETATM 6 C C09 T4T . . . C 3 11.313 6.01 -11.1 1 34.16 ? C09 T4T 502 A 1 HETATM 7 C C10 T4T . . . C 3 10.319 3.405 -4.978 1 26.56 ? C10 T4T 502 A 1 HETATM 8 C C11 T4T . . . C 3 10.678 7.386 -11.289 1 29.83 ? C11 T4T 502 A 1 HETATM 9 C C12 T4T . . . C 3 10.478 2.049 -4.266 1 18.54 ? C12 T4T 502 A 1 HETATM 10 C C13 T4T . . . C 3 11.27 8.107 -12.51 1 24.01 ? C13 T4T 502 A 1 HETATM 11 C C14 T4T . . . C 3 11.509 2.299 -3.144 1 20.57 ? C14 T4T 502 A 1 HETATM 12 C C15 T4T . . . C 3 10.622 9.479 -12.641 1 24.93 ? C15 T4T 502 A 1 HETATM 13 C C16 T4T . . . C 3 12.419 1.095 -2.989 1 21.37 ? C16 T4T 502 A 1 HETATM 14 C C17 T4T . . . C 3 11.32 10.296 -13.73 1 30.41 ? C17 T4T 502 A 1 HETATM 15 C C18 T4T . . . C 3 14.859 2.653 -3.069 1 16.66 ? C18 T4T 502 A 1 HETATM 16 C C19 T4T . . . C 3 14.954 2.364 -1.579 1 17.68 ? C19 T4T 502 A 1 HETATM 17 O O02 T4T . . . C 3 15.453 1.296 -1.128 1 14.85 -1 O02 T4T 502 A 1 HETATM 18 O O03 T4T . . . C 3 14.532 3.242 -0.804 1 15.66 ? O03 T4T 502 A 1 HETATM 19 S S01 T4T . . . C 3 13.983 1.287 -3.874 1 17.48 ? S01 T4T 502 A 1 HETATM 20 H H042 T4T . . . C 3 10.407 3.778 -7.851 1 28.37 ? H042 T4T 502 A 1 HETATM 21 H H041 T4T . . . C 3 8.97 3.934 -8.486 1 28.37 ? H041 T4T 502 A 1 HETATM 22 H H052 T4T . . . C 3 9.492 6.279 -8.835 1 22.76 ? H052 T4T 502 A 1 HETATM 23 H H051 T4T . . . C 3 10.99 5.925 -8.448 1 22.76 ? H051 T4T 502 A 1 HETATM 24 H H061 T4T . . . C 3 9.716 5.491 -6.248 1 35.85 ? H061 T4T 502 A 1 HETATM 25 H H062 T4T . . . C 3 8.246 5.242 -6.766 1 35.85 ? H062 T4T 502 A 1 HETATM 26 H H071 T4T . . . C 3 10.837 4.217 -10.21 1 31.15 ? H071 T4T 502 A 1 HETATM 27 H H072 T4T . . . C 3 9.564 5 -10.704 1 31.15 ? H072 T4T 502 A 1 HETATM 28 H H082 T4T . . . C 3 8.68 2.866 -6.119 1 26.16 ? H082 T4T 502 A 1 HETATM 29 H H081 T4T . . . C 3 8.308 3.888 -4.965 1 26.16 ? H081 T4T 502 A 1 HETATM 30 H H092 T4T . . . C 3 12.169 6.115 -10.656 1 40.99 ? H092 T4T 502 A 1 HETATM 31 H H091 T4T . . . C 3 11.454 5.604 -11.969 1 40.99 ? H091 T4T 502 A 1 HETATM 32 H H101 T4T . . . C 3 10.472 4.107 -4.326 1 31.87 ? H101 T4T 502 A 1 HETATM 33 H H102 T4T . . . C 3 11.005 3.469 -5.66 1 31.87 ? H102 T4T 502 A 1 HETATM 34 H H112 T4T . . . C 3 10.836 7.921 -10.496 1 35.8 ? H112 T4T 502 A 1 HETATM 35 H H111 T4T . . . C 3 9.722 7.28 -11.416 1 35.8 ? H111 T4T 502 A 1 HETATM 36 H H122 T4T . . . C 3 10.81 1.38 -4.885 1 22.24 ? H122 T4T 502 A 1 HETATM 37 H H121 T4T . . . C 3 9.63 1.766 -3.887 1 22.24 ? H121 T4T 502 A 1 HETATM 38 H H132 T4T . . . C 3 12.227 8.21 -12.393 1 28.81 ? H132 T4T 502 A 1 HETATM 39 H H131 T4T . . . C 3 11.095 7.588 -13.31 1 28.81 ? H131 T4T 502 A 1 HETATM 40 H H142 T4T . . . C 3 11.042 2.459 -2.309 1 24.68 ? H142 T4T 502 A 1 HETATM 41 H H141 T4T . . . C 3 12.043 3.078 -3.367 1 24.68 ? H141 T4T 502 A 1 HETATM 42 H H152 T4T . . . C 3 10.691 9.949 -11.795 1 29.92 ? H152 T4T 502 A 1 HETATM 43 H H151 T4T . . . C 3 9.686 9.371 -12.872 1 29.92 ? H151 T4T 502 A 1 HETATM 44 H H161 T4T . . . C 3 12.607 0.964 -2.046 1 25.64 ? H161 T4T 502 A 1 HETATM 45 H H162 T4T . . . C 3 11.961 0.311 -3.33 1 25.64 ? H162 T4T 502 A 1 HETATM 46 H H171 T4T . . . C 3 11.312 9.798 -14.563 1 36.49 ? H171 T4T 502 A 1 HETATM 47 H H172 T4T . . . C 3 12.237 10.47 -13.466 1 36.49 ? H172 T4T 502 A 1 HETATM 48 H H173 T4T . . . C 3 10.853 11.137 -13.853 1 36.49 ? H173 T4T 502 A 1 HETATM 49 H H182 T4T . . . C 3 14.372 3.48 -3.209 1 19.99 ? H182 T4T 502 A 1 HETATM 50 H H181 T4T . . . C 3 15.751 2.733 -3.442 1 19.99 ? H181 T4T 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 50 #