data_6KB8 # _model_server_result.job_id zdEwiAQbKm9y8vbNPLZEFA _model_server_result.datetime_utc '2024-11-27 03:58:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kb8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6KB8 # _exptl.entry_id 6KB8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.67 _cell.angle_gamma 90 _cell.entry_id 6KB8 _cell.length_a 44.709 _cell.length_b 62.078 _cell.length_c 53.047 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KB8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 212 n n C1 C2 GOL sing 213 n n C1 H11 GOL sing 214 n n C1 H12 GOL sing 215 n n O1 HO1 GOL sing 216 n n C2 O2 GOL sing 217 n n C2 C3 GOL sing 218 n n C2 H2 GOL sing 219 n n O2 HO2 GOL sing 220 n n C3 O3 GOL sing 221 n n C3 H31 GOL sing 222 n n C3 H32 GOL sing 223 n n O3 HO3 GOL sing 224 n n # _atom_sites.entry_id 6KB8 _atom_sites.fract_transf_matrix[1][1] 0.022367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006698 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 2VN A 1 502 1 2VN G77 . D 4 HOH A 1 601 96 HOH HOH . D 4 HOH A 2 602 51 HOH HOH . D 4 HOH A 3 603 49 HOH HOH . D 4 HOH A 4 604 129 HOH HOH . D 4 HOH A 5 605 16 HOH HOH . D 4 HOH A 6 606 25 HOH HOH . D 4 HOH A 7 607 136 HOH HOH . D 4 HOH A 8 608 91 HOH HOH . D 4 HOH A 9 609 67 HOH HOH . D 4 HOH A 10 610 14 HOH HOH . D 4 HOH A 11 611 114 HOH HOH . D 4 HOH A 12 612 75 HOH HOH . D 4 HOH A 13 613 72 HOH HOH . D 4 HOH A 14 614 57 HOH HOH . D 4 HOH A 15 615 59 HOH HOH . D 4 HOH A 16 616 48 HOH HOH . D 4 HOH A 17 617 88 HOH HOH . D 4 HOH A 18 618 23 HOH HOH . D 4 HOH A 19 619 128 HOH HOH . D 4 HOH A 20 620 46 HOH HOH . D 4 HOH A 21 621 50 HOH HOH . D 4 HOH A 22 622 83 HOH HOH . D 4 HOH A 23 623 127 HOH HOH . D 4 HOH A 24 624 66 HOH HOH . D 4 HOH A 25 625 63 HOH HOH . D 4 HOH A 26 626 45 HOH HOH . D 4 HOH A 27 627 151 HOH HOH . D 4 HOH A 28 628 124 HOH HOH . D 4 HOH A 29 629 104 HOH HOH . D 4 HOH A 30 630 21 HOH HOH . D 4 HOH A 31 631 125 HOH HOH . D 4 HOH A 32 632 141 HOH HOH . D 4 HOH A 33 633 138 HOH HOH . D 4 HOH A 34 634 118 HOH HOH . D 4 HOH A 35 635 44 HOH HOH . D 4 HOH A 36 636 7 HOH HOH . D 4 HOH A 37 637 24 HOH HOH . D 4 HOH A 38 638 54 HOH HOH . D 4 HOH A 39 639 4 HOH HOH . D 4 HOH A 40 640 69 HOH HOH . D 4 HOH A 41 641 68 HOH HOH . D 4 HOH A 42 642 101 HOH HOH . D 4 HOH A 43 643 60 HOH HOH . D 4 HOH A 44 644 149 HOH HOH . D 4 HOH A 45 645 18 HOH HOH . D 4 HOH A 46 646 52 HOH HOH . D 4 HOH A 47 647 79 HOH HOH . D 4 HOH A 48 648 22 HOH HOH . D 4 HOH A 49 649 42 HOH HOH . D 4 HOH A 50 650 107 HOH HOH . D 4 HOH A 51 651 17 HOH HOH . D 4 HOH A 52 652 119 HOH HOH . D 4 HOH A 53 653 71 HOH HOH . D 4 HOH A 54 654 120 HOH HOH . D 4 HOH A 55 655 90 HOH HOH . D 4 HOH A 56 656 133 HOH HOH . D 4 HOH A 57 657 1 HOH HOH . D 4 HOH A 58 658 11 HOH HOH . D 4 HOH A 59 659 93 HOH HOH . D 4 HOH A 60 660 74 HOH HOH . D 4 HOH A 61 661 98 HOH HOH . D 4 HOH A 62 662 28 HOH HOH . D 4 HOH A 63 663 9 HOH HOH . D 4 HOH A 64 664 31 HOH HOH . D 4 HOH A 65 665 32 HOH HOH . D 4 HOH A 66 666 131 HOH HOH . D 4 HOH A 67 667 117 HOH HOH . D 4 HOH A 68 668 5 HOH HOH . D 4 HOH A 69 669 15 HOH HOH . D 4 HOH A 70 670 30 HOH HOH . D 4 HOH A 71 671 113 HOH HOH . D 4 HOH A 72 672 62 HOH HOH . D 4 HOH A 73 673 53 HOH HOH . D 4 HOH A 74 674 6 HOH HOH . D 4 HOH A 75 675 8 HOH HOH . D 4 HOH A 76 676 36 HOH HOH . D 4 HOH A 77 677 10 HOH HOH . D 4 HOH A 78 678 77 HOH HOH . D 4 HOH A 79 679 137 HOH HOH . D 4 HOH A 80 680 144 HOH HOH . D 4 HOH A 81 681 100 HOH HOH . D 4 HOH A 82 682 3 HOH HOH . D 4 HOH A 83 683 34 HOH HOH . D 4 HOH A 84 684 2 HOH HOH . D 4 HOH A 85 685 135 HOH HOH . D 4 HOH A 86 686 29 HOH HOH . D 4 HOH A 87 687 76 HOH HOH . D 4 HOH A 88 688 65 HOH HOH . D 4 HOH A 89 689 112 HOH HOH . D 4 HOH A 90 690 39 HOH HOH . D 4 HOH A 91 691 126 HOH HOH . D 4 HOH A 92 692 19 HOH HOH . D 4 HOH A 93 693 145 HOH HOH . D 4 HOH A 94 694 12 HOH HOH . D 4 HOH A 95 695 43 HOH HOH . D 4 HOH A 96 696 13 HOH HOH . D 4 HOH A 97 697 147 HOH HOH . D 4 HOH A 98 698 37 HOH HOH . D 4 HOH A 99 699 122 HOH HOH . D 4 HOH A 100 700 85 HOH HOH . D 4 HOH A 101 701 27 HOH HOH . D 4 HOH A 102 702 94 HOH HOH . D 4 HOH A 103 703 121 HOH HOH . D 4 HOH A 104 704 61 HOH HOH . D 4 HOH A 105 705 102 HOH HOH . D 4 HOH A 106 706 58 HOH HOH . D 4 HOH A 107 707 106 HOH HOH . D 4 HOH A 108 708 33 HOH HOH . D 4 HOH A 109 709 38 HOH HOH . D 4 HOH A 110 710 92 HOH HOH . D 4 HOH A 111 711 86 HOH HOH . D 4 HOH A 112 712 89 HOH HOH . D 4 HOH A 113 713 132 HOH HOH . D 4 HOH A 114 714 134 HOH HOH . D 4 HOH A 115 715 64 HOH HOH . D 4 HOH A 116 716 41 HOH HOH . D 4 HOH A 117 717 130 HOH HOH . D 4 HOH A 118 718 47 HOH HOH . D 4 HOH A 119 719 40 HOH HOH . D 4 HOH A 120 720 55 HOH HOH . D 4 HOH A 121 721 139 HOH HOH . D 4 HOH A 122 722 20 HOH HOH . D 4 HOH A 123 723 109 HOH HOH . D 4 HOH A 124 724 35 HOH HOH . D 4 HOH A 125 725 140 HOH HOH . D 4 HOH A 126 726 70 HOH HOH . D 4 HOH A 127 727 73 HOH HOH . D 4 HOH A 128 728 105 HOH HOH . D 4 HOH A 129 729 142 HOH HOH . D 4 HOH A 130 730 80 HOH HOH . D 4 HOH A 131 731 82 HOH HOH . D 4 HOH A 132 732 116 HOH HOH . D 4 HOH A 133 733 78 HOH HOH . D 4 HOH A 134 734 146 HOH HOH . D 4 HOH A 135 735 99 HOH HOH . D 4 HOH A 136 736 143 HOH HOH . D 4 HOH A 137 737 87 HOH HOH . D 4 HOH A 138 738 97 HOH HOH . D 4 HOH A 139 739 148 HOH HOH . D 4 HOH A 140 740 152 HOH HOH . D 4 HOH A 141 741 115 HOH HOH . D 4 HOH A 142 742 56 HOH HOH . D 4 HOH A 143 743 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -5.684 -1.352 -6.887 1 34.11 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 -7.077 -1.385 -6.951 1 37.97 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 -5.195 -0.243 -7.828 1 33.77 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 -4.537 -0.799 -8.936 1 31.9 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 -4.265 0.62 -7.026 1 33.3 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 -5.149 1.144 -6.025 1 31.12 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . B 2 -5.401 -1.161 -5.979 1 40.93 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . B 2 -5.322 -2.206 -7.17 1 40.93 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . B 2 -7.368 -0.624 -7.194 1 45.57 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . B 2 -5.951 0.285 -8.129 1 40.53 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . B 2 -4.288 -1.59 -8.75 1 38.28 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . B 2 -3.56 0.089 -6.623 1 39.96 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . B 2 -3.897 1.333 -7.571 1 39.96 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . B 2 -5.687 1.696 -6.383 1 37.34 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #