data_6KB9 # _model_server_result.job_id xibgFNs0WQGYg66BSOlW0w _model_server_result.datetime_utc '2024-10-31 00:25:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kb9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6KB9 # _exptl.entry_id 6KB9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.79 _cell.angle_gamma 90 _cell.entry_id 6KB9 _cell.length_a 44.859 _cell.length_b 61.197 _cell.length_c 53.114 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KB9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6KB9 _atom_sites.fract_transf_matrix[1][1] 0.022292 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006726 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 P7F A 1 502 1 P7F P7F . D 4 HOH A 1 601 144 HOH HOH . D 4 HOH A 2 602 174 HOH HOH . D 4 HOH A 3 603 101 HOH HOH . D 4 HOH A 4 604 19 HOH HOH . D 4 HOH A 5 605 156 HOH HOH . D 4 HOH A 6 606 107 HOH HOH . D 4 HOH A 7 607 184 HOH HOH . D 4 HOH A 8 608 99 HOH HOH . D 4 HOH A 9 609 149 HOH HOH . D 4 HOH A 10 610 60 HOH HOH . D 4 HOH A 11 611 116 HOH HOH . D 4 HOH A 12 612 138 HOH HOH . D 4 HOH A 13 613 163 HOH HOH . D 4 HOH A 14 614 104 HOH HOH . D 4 HOH A 15 615 62 HOH HOH . D 4 HOH A 16 616 14 HOH HOH . D 4 HOH A 17 617 139 HOH HOH . D 4 HOH A 18 618 34 HOH HOH . D 4 HOH A 19 619 151 HOH HOH . D 4 HOH A 20 620 83 HOH HOH . D 4 HOH A 21 621 33 HOH HOH . D 4 HOH A 22 622 160 HOH HOH . D 4 HOH A 23 623 158 HOH HOH . D 4 HOH A 24 624 27 HOH HOH . D 4 HOH A 25 625 2 HOH HOH . D 4 HOH A 26 626 39 HOH HOH . D 4 HOH A 27 627 44 HOH HOH . D 4 HOH A 28 628 67 HOH HOH . D 4 HOH A 29 629 24 HOH HOH . D 4 HOH A 30 630 7 HOH HOH . D 4 HOH A 31 631 49 HOH HOH . D 4 HOH A 32 632 175 HOH HOH . D 4 HOH A 33 633 20 HOH HOH . D 4 HOH A 34 634 29 HOH HOH . D 4 HOH A 35 635 130 HOH HOH . D 4 HOH A 36 636 95 HOH HOH . D 4 HOH A 37 637 181 HOH HOH . D 4 HOH A 38 638 80 HOH HOH . D 4 HOH A 39 639 31 HOH HOH . D 4 HOH A 40 640 4 HOH HOH . D 4 HOH A 41 641 153 HOH HOH . D 4 HOH A 42 642 72 HOH HOH . D 4 HOH A 43 643 43 HOH HOH . D 4 HOH A 44 644 125 HOH HOH . D 4 HOH A 45 645 94 HOH HOH . D 4 HOH A 46 646 113 HOH HOH . D 4 HOH A 47 647 145 HOH HOH . D 4 HOH A 48 648 87 HOH HOH . D 4 HOH A 49 649 28 HOH HOH . D 4 HOH A 50 650 1 HOH HOH . D 4 HOH A 51 651 182 HOH HOH . D 4 HOH A 52 652 26 HOH HOH . D 4 HOH A 53 653 131 HOH HOH . D 4 HOH A 54 654 81 HOH HOH . D 4 HOH A 55 655 79 HOH HOH . D 4 HOH A 56 656 147 HOH HOH . D 4 HOH A 57 657 171 HOH HOH . D 4 HOH A 58 658 140 HOH HOH . D 4 HOH A 59 659 30 HOH HOH . D 4 HOH A 60 660 123 HOH HOH . D 4 HOH A 61 661 58 HOH HOH . D 4 HOH A 62 662 93 HOH HOH . D 4 HOH A 63 663 3 HOH HOH . D 4 HOH A 64 664 38 HOH HOH . D 4 HOH A 65 665 75 HOH HOH . D 4 HOH A 66 666 68 HOH HOH . D 4 HOH A 67 667 23 HOH HOH . D 4 HOH A 68 668 11 HOH HOH . D 4 HOH A 69 669 12 HOH HOH . D 4 HOH A 70 670 89 HOH HOH . D 4 HOH A 71 671 32 HOH HOH . D 4 HOH A 72 672 132 HOH HOH . D 4 HOH A 73 673 51 HOH HOH . D 4 HOH A 74 674 114 HOH HOH . D 4 HOH A 75 675 180 HOH HOH . D 4 HOH A 76 676 133 HOH HOH . D 4 HOH A 77 677 5 HOH HOH . D 4 HOH A 78 678 134 HOH HOH . D 4 HOH A 79 679 88 HOH HOH . D 4 HOH A 80 680 10 HOH HOH . D 4 HOH A 81 681 18 HOH HOH . D 4 HOH A 82 682 21 HOH HOH . D 4 HOH A 83 683 6 HOH HOH . D 4 HOH A 84 684 15 HOH HOH . D 4 HOH A 85 685 141 HOH HOH . D 4 HOH A 86 686 169 HOH HOH . D 4 HOH A 87 687 54 HOH HOH . D 4 HOH A 88 688 103 HOH HOH . D 4 HOH A 89 689 90 HOH HOH . D 4 HOH A 90 690 50 HOH HOH . D 4 HOH A 91 691 13 HOH HOH . D 4 HOH A 92 692 126 HOH HOH . D 4 HOH A 93 693 74 HOH HOH . D 4 HOH A 94 694 64 HOH HOH . D 4 HOH A 95 695 91 HOH HOH . D 4 HOH A 96 696 73 HOH HOH . D 4 HOH A 97 697 66 HOH HOH . D 4 HOH A 98 698 61 HOH HOH . D 4 HOH A 99 699 16 HOH HOH . D 4 HOH A 100 700 112 HOH HOH . D 4 HOH A 101 701 22 HOH HOH . D 4 HOH A 102 702 142 HOH HOH . D 4 HOH A 103 703 25 HOH HOH . D 4 HOH A 104 704 170 HOH HOH . D 4 HOH A 105 705 128 HOH HOH . D 4 HOH A 106 706 46 HOH HOH . D 4 HOH A 107 707 9 HOH HOH . D 4 HOH A 108 708 47 HOH HOH . D 4 HOH A 109 709 137 HOH HOH . D 4 HOH A 110 710 178 HOH HOH . D 4 HOH A 111 711 155 HOH HOH . D 4 HOH A 112 712 57 HOH HOH . D 4 HOH A 113 713 69 HOH HOH . D 4 HOH A 114 714 118 HOH HOH . D 4 HOH A 115 715 56 HOH HOH . D 4 HOH A 116 716 82 HOH HOH . D 4 HOH A 117 717 37 HOH HOH . D 4 HOH A 118 718 98 HOH HOH . D 4 HOH A 119 719 85 HOH HOH . D 4 HOH A 120 720 162 HOH HOH . D 4 HOH A 121 721 117 HOH HOH . D 4 HOH A 122 722 121 HOH HOH . D 4 HOH A 123 723 48 HOH HOH . D 4 HOH A 124 724 129 HOH HOH . D 4 HOH A 125 725 8 HOH HOH . D 4 HOH A 126 726 97 HOH HOH . D 4 HOH A 127 727 59 HOH HOH . D 4 HOH A 128 728 173 HOH HOH . D 4 HOH A 129 729 127 HOH HOH . D 4 HOH A 130 730 105 HOH HOH . D 4 HOH A 131 731 71 HOH HOH . D 4 HOH A 132 732 65 HOH HOH . D 4 HOH A 133 733 41 HOH HOH . D 4 HOH A 134 734 63 HOH HOH . D 4 HOH A 135 735 148 HOH HOH . D 4 HOH A 136 736 40 HOH HOH . D 4 HOH A 137 737 168 HOH HOH . D 4 HOH A 138 738 53 HOH HOH . D 4 HOH A 139 739 166 HOH HOH . D 4 HOH A 140 740 172 HOH HOH . D 4 HOH A 141 741 179 HOH HOH . D 4 HOH A 142 742 135 HOH HOH . D 4 HOH A 143 743 115 HOH HOH . D 4 HOH A 144 744 17 HOH HOH . D 4 HOH A 145 745 45 HOH HOH . D 4 HOH A 146 746 36 HOH HOH . D 4 HOH A 147 747 86 HOH HOH . D 4 HOH A 148 748 92 HOH HOH . D 4 HOH A 149 749 42 HOH HOH . D 4 HOH A 150 750 55 HOH HOH . D 4 HOH A 151 751 183 HOH HOH . D 4 HOH A 152 752 102 HOH HOH . D 4 HOH A 153 753 143 HOH HOH . D 4 HOH A 154 754 110 HOH HOH . D 4 HOH A 155 755 124 HOH HOH . D 4 HOH A 156 756 177 HOH HOH . D 4 HOH A 157 757 52 HOH HOH . D 4 HOH A 158 758 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -4.814 0.032 -8.3 1 22.54 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 -4.538 -1.027 -9.18 1 24.13 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 -4.915 -0.481 -6.87 1 19.04 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 -5.317 0.595 -6.046 1 20.13 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 -5.939 -1.625 -6.758 1 20.8 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 -7.246 -1.182 -7.024 1 28.13 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . B 2 -4.102 0.689 -8.356 1 27.05 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . B 2 -5.654 0.447 -8.552 1 27.05 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . B 2 -4.461 -0.726 -9.971 1 28.96 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . B 2 -4.046 -0.799 -6.581 1 22.85 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . B 2 -4.856 1.283 -6.235 1 24.15 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . B 2 -5.906 -1.991 -5.86 1 24.95 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . B 2 -5.706 -2.321 -7.392 1 24.95 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . B 2 -7.221 -0.547 -7.588 1 33.75 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #