data_6KBR # _model_server_result.job_id GIqqOcOuEztiZnvo_nQA3g _model_server_result.datetime_utc '2024-11-05 05:34:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6KBR # _exptl.entry_id 6KBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.58 _cell.angle_gamma 90 _cell.entry_id 6KBR _cell.length_a 145.208 _cell.length_b 41.62 _cell.length_c 43.59 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 37 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 141 A CYS 141 1_555 A SG CYS 241 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf4 A SG CYS 148 A CYS 148 1_555 A SG CYS 213 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 A SG CYS 178 A CYS 178 1_555 A SG CYS 192 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf6 A SG CYS 203 A CYS 203 1_555 A SG CYS 228 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? disulf ? disulf7 B SG CYS 14 C CYS 15 1_555 B SG CYS 44 C CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? disulf ? disulf8 B SG CYS 22 C CYS 23 1_555 B SG CYS 41 C CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 B SG CYS 30 C CYS 31 1_555 B SG CYS 62 C CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6KBR _atom_sites.fract_transf_matrix[1][1] 0.006887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00019 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 1 GOL GOL . D 4 HOH A 1 401 118 HOH HOH . D 4 HOH A 2 402 31 HOH HOH . D 4 HOH A 3 403 108 HOH HOH . D 4 HOH A 4 404 36 HOH HOH . D 4 HOH A 5 405 64 HOH HOH . D 4 HOH A 6 406 38 HOH HOH . D 4 HOH A 7 407 73 HOH HOH . D 4 HOH A 8 408 46 HOH HOH . D 4 HOH A 9 409 81 HOH HOH . D 4 HOH A 10 410 27 HOH HOH . D 4 HOH A 11 411 67 HOH HOH . D 4 HOH A 12 412 17 HOH HOH . D 4 HOH A 13 413 74 HOH HOH . D 4 HOH A 14 414 29 HOH HOH . D 4 HOH A 15 415 18 HOH HOH . D 4 HOH A 16 416 68 HOH HOH . D 4 HOH A 17 417 86 HOH HOH . D 4 HOH A 18 418 16 HOH HOH . D 4 HOH A 19 419 100 HOH HOH . D 4 HOH A 20 420 26 HOH HOH . D 4 HOH A 21 421 10 HOH HOH . D 4 HOH A 22 422 122 HOH HOH . D 4 HOH A 23 423 123 HOH HOH . D 4 HOH A 24 424 22 HOH HOH . D 4 HOH A 25 425 20 HOH HOH . D 4 HOH A 26 426 12 HOH HOH . D 4 HOH A 27 427 55 HOH HOH . D 4 HOH A 28 428 8 HOH HOH . D 4 HOH A 29 429 15 HOH HOH . D 4 HOH A 30 430 41 HOH HOH . D 4 HOH A 31 431 57 HOH HOH . D 4 HOH A 32 432 30 HOH HOH . D 4 HOH A 33 433 69 HOH HOH . D 4 HOH A 34 434 103 HOH HOH . D 4 HOH A 35 435 34 HOH HOH . D 4 HOH A 36 436 80 HOH HOH . D 4 HOH A 37 437 5 HOH HOH . D 4 HOH A 38 438 39 HOH HOH . D 4 HOH A 39 439 59 HOH HOH . D 4 HOH A 40 440 44 HOH HOH . D 4 HOH A 41 441 21 HOH HOH . D 4 HOH A 42 442 24 HOH HOH . D 4 HOH A 43 443 50 HOH HOH . D 4 HOH A 44 444 65 HOH HOH . D 4 HOH A 45 445 54 HOH HOH . D 4 HOH A 46 446 28 HOH HOH . D 4 HOH A 47 447 37 HOH HOH . D 4 HOH A 48 448 56 HOH HOH . D 4 HOH A 49 449 82 HOH HOH . D 4 HOH A 50 450 102 HOH HOH . D 4 HOH A 51 451 98 HOH HOH . D 4 HOH A 52 452 79 HOH HOH . D 4 HOH A 53 453 13 HOH HOH . D 4 HOH A 54 454 4 HOH HOH . D 4 HOH A 55 455 99 HOH HOH . D 4 HOH A 56 456 42 HOH HOH . D 4 HOH A 57 457 85 HOH HOH . D 4 HOH A 58 458 125 HOH HOH . D 4 HOH A 59 459 104 HOH HOH . D 4 HOH A 60 460 33 HOH HOH . D 4 HOH A 61 461 115 HOH HOH . D 4 HOH A 62 462 43 HOH HOH . D 4 HOH A 63 463 35 HOH HOH . D 4 HOH A 64 464 11 HOH HOH . D 4 HOH A 65 465 72 HOH HOH . D 4 HOH A 66 466 94 HOH HOH . D 4 HOH A 67 467 52 HOH HOH . D 4 HOH A 68 468 63 HOH HOH . D 4 HOH A 69 469 93 HOH HOH . D 4 HOH A 70 470 116 HOH HOH . D 4 HOH A 71 471 19 HOH HOH . D 4 HOH A 72 472 2 HOH HOH . D 4 HOH A 73 473 109 HOH HOH . D 4 HOH A 74 474 110 HOH HOH . D 4 HOH A 75 475 23 HOH HOH . D 4 HOH A 76 476 62 HOH HOH . D 4 HOH A 77 477 53 HOH HOH . D 4 HOH A 78 478 120 HOH HOH . D 4 HOH A 79 479 71 HOH HOH . D 4 HOH A 80 480 106 HOH HOH . D 4 HOH A 81 481 117 HOH HOH . D 4 HOH A 82 482 97 HOH HOH . D 4 HOH A 83 483 121 HOH HOH . D 4 HOH A 84 484 88 HOH HOH . D 4 HOH A 85 485 127 HOH HOH . D 4 HOH A 86 486 48 HOH HOH . D 4 HOH A 87 487 66 HOH HOH . D 4 HOH A 88 488 87 HOH HOH . D 4 HOH A 89 489 83 HOH HOH . D 4 HOH A 90 490 6 HOH HOH . D 4 HOH A 91 491 124 HOH HOH . D 4 HOH A 92 492 119 HOH HOH . E 4 HOH C 1 101 32 HOH HOH . E 4 HOH C 2 102 51 HOH HOH . E 4 HOH C 3 103 70 HOH HOH . E 4 HOH C 4 104 75 HOH HOH . E 4 HOH C 5 105 77 HOH HOH . E 4 HOH C 6 106 9 HOH HOH . E 4 HOH C 7 107 14 HOH HOH . E 4 HOH C 8 108 45 HOH HOH . E 4 HOH C 9 109 58 HOH HOH . E 4 HOH C 10 110 105 HOH HOH . E 4 HOH C 11 111 96 HOH HOH . E 4 HOH C 12 112 76 HOH HOH . E 4 HOH C 13 113 101 HOH HOH . E 4 HOH C 14 114 126 HOH HOH . E 4 HOH C 15 115 60 HOH HOH . E 4 HOH C 16 116 3 HOH HOH . E 4 HOH C 17 117 113 HOH HOH . E 4 HOH C 18 118 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -4.396 -23.658 6.442 1 12.03 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 3 -3.325 -23.056 7.215 1 10.73 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 3 -4.342 -23.335 4.93 1 12.24 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 3 -4.301 -21.93 4.62 1 12.2 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 3 -3.127 -23.952 4.279 1 13.9 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 3 -3.38 -24.315 2.937 1 15.52 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #