data_6KC2 # _model_server_result.job_id ee8lra5QUDdQL82CXt59Rg _model_server_result.datetime_utc '2024-11-25 10:17:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":407}' # _entry.id 6KC2 # _exptl.entry_id 6KC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6KC2 _cell.length_a 152.402 _cell.length_b 152.402 _cell.length_c 146.035 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 374 NAG 2 n B NAG 2 B 2 NAG A 375 NAG 2 n C NAG 1 C 1 NAG A 376 NAG 2 n C NAG 2 C 2 NAG A 377 NAG 2 n D NAG 1 D 1 NAG A 378 NAG 2 n D NAG 2 D 2 NAG A 379 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 89 A CYS 89 1_555 A SG CYS 251 A CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? covale ? covale1 A ND2 ASN 78 A ASN 78 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 A ND2 ASN 298 A ASN 298 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 A ND2 ASN 321 A ASN 321 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? metalc ? metalc1 A OD1 ASP 97 A ASP 97 1_555 F CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 A OD2 ASP 98 A ASP 98 1_555 F CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc3 A OD1 ASN 138 A ASN 138 1_555 F CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc4 A OG SER 143 A SER 143 1_555 F CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc5 A O PRO 144 A PRO 144 1_555 F CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc6 A OD1 ASP 259 A ASP 259 1_555 E CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc7 A OD2 ASP 260 A ASP 260 1_555 E CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc8 A OD1 ASN 301 A ASN 301 1_555 E CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc9 A O GLY 303 A GLY 303 1_555 E CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc10 A O PRO 305 A PRO 305 1_555 E CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc11 E CA CA . A CA 407 1_555 H O4 RAM . A RAM 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc12 E CA CA . A CA 407 1_555 H O3 RAM . A RAM 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc13 F CA CA . A CA 408 1_555 G O3 RAM . A RAM 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc14 F CA CA . A CA 408 1_555 G O4 RAM . A RAM 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6KC2 _atom_sites.fract_transf_matrix[1][1] 0.006562 _atom_sites.fract_transf_matrix[1][2] 0.003788 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA A 1 407 1 CA CA . F 3 CA A 1 408 2 CA CA . G 4 RAM A 1 409 542 RAM RAM . H 4 RAM A 1 410 543 RAM RAM . I 5 HOH A 1 501 10 HOH HOH . I 5 HOH A 2 502 125 HOH HOH . I 5 HOH A 3 503 51 HOH HOH . I 5 HOH A 4 504 55 HOH HOH . I 5 HOH A 5 505 99 HOH HOH . I 5 HOH A 6 506 43 HOH HOH . I 5 HOH A 7 507 144 HOH HOH . I 5 HOH A 8 508 120 HOH HOH . I 5 HOH A 9 509 5 HOH HOH . I 5 HOH A 10 510 149 HOH HOH . I 5 HOH A 11 511 76 HOH HOH . I 5 HOH A 12 512 180 HOH HOH . I 5 HOH A 13 513 157 HOH HOH . I 5 HOH A 14 514 1 HOH HOH . I 5 HOH A 15 515 40 HOH HOH . I 5 HOH A 16 516 41 HOH HOH . I 5 HOH A 17 517 14 HOH HOH . I 5 HOH A 18 518 127 HOH HOH . I 5 HOH A 19 519 12 HOH HOH . I 5 HOH A 20 520 69 HOH HOH . I 5 HOH A 21 521 78 HOH HOH . I 5 HOH A 22 522 165 HOH HOH . I 5 HOH A 23 523 135 HOH HOH . I 5 HOH A 24 524 187 HOH HOH . I 5 HOH A 25 525 48 HOH HOH . I 5 HOH A 26 526 36 HOH HOH . I 5 HOH A 27 527 145 HOH HOH . I 5 HOH A 28 528 29 HOH HOH . I 5 HOH A 29 529 70 HOH HOH . I 5 HOH A 30 530 73 HOH HOH . I 5 HOH A 31 531 46 HOH HOH . I 5 HOH A 32 532 34 HOH HOH . I 5 HOH A 33 533 138 HOH HOH . I 5 HOH A 34 534 126 HOH HOH . I 5 HOH A 35 535 137 HOH HOH . I 5 HOH A 36 536 82 HOH HOH . I 5 HOH A 37 537 142 HOH HOH . I 5 HOH A 38 538 13 HOH HOH . I 5 HOH A 39 539 16 HOH HOH . I 5 HOH A 40 540 97 HOH HOH . I 5 HOH A 41 541 113 HOH HOH . I 5 HOH A 42 542 93 HOH HOH . I 5 HOH A 43 543 134 HOH HOH . I 5 HOH A 44 544 168 HOH HOH . I 5 HOH A 45 545 77 HOH HOH . I 5 HOH A 46 546 92 HOH HOH . I 5 HOH A 47 547 90 HOH HOH . I 5 HOH A 48 548 72 HOH HOH . I 5 HOH A 49 549 54 HOH HOH . I 5 HOH A 50 550 131 HOH HOH . I 5 HOH A 51 551 15 HOH HOH . I 5 HOH A 52 552 50 HOH HOH . I 5 HOH A 53 553 159 HOH HOH . I 5 HOH A 54 554 84 HOH HOH . I 5 HOH A 55 555 32 HOH HOH . I 5 HOH A 56 556 86 HOH HOH . I 5 HOH A 57 557 28 HOH HOH . I 5 HOH A 58 558 31 HOH HOH . I 5 HOH A 59 559 115 HOH HOH . I 5 HOH A 60 560 155 HOH HOH . I 5 HOH A 61 561 30 HOH HOH . I 5 HOH A 62 562 98 HOH HOH . I 5 HOH A 63 563 11 HOH HOH . I 5 HOH A 64 564 147 HOH HOH . I 5 HOH A 65 565 114 HOH HOH . I 5 HOH A 66 566 42 HOH HOH . I 5 HOH A 67 567 56 HOH HOH . I 5 HOH A 68 568 62 HOH HOH . I 5 HOH A 69 569 68 HOH HOH . I 5 HOH A 70 570 67 HOH HOH . I 5 HOH A 71 571 24 HOH HOH . I 5 HOH A 72 572 65 HOH HOH . I 5 HOH A 73 573 87 HOH HOH . I 5 HOH A 74 574 74 HOH HOH . I 5 HOH A 75 575 96 HOH HOH . I 5 HOH A 76 576 156 HOH HOH . I 5 HOH A 77 577 124 HOH HOH . I 5 HOH A 78 578 141 HOH HOH . I 5 HOH A 79 579 20 HOH HOH . I 5 HOH A 80 580 18 HOH HOH . I 5 HOH A 81 581 53 HOH HOH . I 5 HOH A 82 582 57 HOH HOH . I 5 HOH A 83 583 26 HOH HOH . I 5 HOH A 84 584 27 HOH HOH . I 5 HOH A 85 585 64 HOH HOH . I 5 HOH A 86 586 37 HOH HOH . I 5 HOH A 87 587 6 HOH HOH . I 5 HOH A 88 588 172 HOH HOH . I 5 HOH A 89 589 38 HOH HOH . I 5 HOH A 90 590 9 HOH HOH . I 5 HOH A 91 591 23 HOH HOH . I 5 HOH A 92 592 33 HOH HOH . I 5 HOH A 93 593 79 HOH HOH . I 5 HOH A 94 594 61 HOH HOH . I 5 HOH A 95 595 66 HOH HOH . I 5 HOH A 96 596 116 HOH HOH . I 5 HOH A 97 597 7 HOH HOH . I 5 HOH A 98 598 140 HOH HOH . I 5 HOH A 99 599 106 HOH HOH . I 5 HOH A 100 600 22 HOH HOH . I 5 HOH A 101 601 47 HOH HOH . I 5 HOH A 102 602 118 HOH HOH . I 5 HOH A 103 603 176 HOH HOH . I 5 HOH A 104 604 8 HOH HOH . I 5 HOH A 105 605 39 HOH HOH . I 5 HOH A 106 606 25 HOH HOH . I 5 HOH A 107 607 44 HOH HOH . I 5 HOH A 108 608 186 HOH HOH . I 5 HOH A 109 609 52 HOH HOH . I 5 HOH A 110 610 154 HOH HOH . I 5 HOH A 111 611 63 HOH HOH . I 5 HOH A 112 612 129 HOH HOH . I 5 HOH A 113 613 2 HOH HOH . I 5 HOH A 114 614 17 HOH HOH . I 5 HOH A 115 615 60 HOH HOH . I 5 HOH A 116 616 108 HOH HOH . I 5 HOH A 117 617 177 HOH HOH . I 5 HOH A 118 618 81 HOH HOH . I 5 HOH A 119 619 153 HOH HOH . I 5 HOH A 120 620 111 HOH HOH . I 5 HOH A 121 621 3 HOH HOH . I 5 HOH A 122 622 89 HOH HOH . I 5 HOH A 123 623 104 HOH HOH . I 5 HOH A 124 624 95 HOH HOH . I 5 HOH A 125 625 167 HOH HOH . I 5 HOH A 126 626 19 HOH HOH . I 5 HOH A 127 627 94 HOH HOH . I 5 HOH A 128 628 75 HOH HOH . I 5 HOH A 129 629 21 HOH HOH . I 5 HOH A 130 630 35 HOH HOH . I 5 HOH A 131 631 100 HOH HOH . I 5 HOH A 132 632 91 HOH HOH . I 5 HOH A 133 633 83 HOH HOH . I 5 HOH A 134 634 132 HOH HOH . I 5 HOH A 135 635 45 HOH HOH . I 5 HOH A 136 636 175 HOH HOH . I 5 HOH A 137 637 58 HOH HOH . I 5 HOH A 138 638 103 HOH HOH . I 5 HOH A 139 639 150 HOH HOH . I 5 HOH A 140 640 107 HOH HOH . I 5 HOH A 141 641 133 HOH HOH . I 5 HOH A 142 642 173 HOH HOH . I 5 HOH A 143 643 88 HOH HOH . I 5 HOH A 144 644 71 HOH HOH . I 5 HOH A 145 645 169 HOH HOH . I 5 HOH A 146 646 161 HOH HOH . I 5 HOH A 147 647 139 HOH HOH . I 5 HOH A 148 648 85 HOH HOH . I 5 HOH A 149 649 49 HOH HOH . I 5 HOH A 150 650 119 HOH HOH . I 5 HOH A 151 651 109 HOH HOH . I 5 HOH A 152 652 190 HOH HOH . I 5 HOH A 153 653 59 HOH HOH . I 5 HOH A 154 654 183 HOH HOH . I 5 HOH A 155 655 117 HOH HOH . I 5 HOH A 156 656 195 HOH HOH . I 5 HOH A 157 657 164 HOH HOH . I 5 HOH A 158 658 151 HOH HOH . I 5 HOH A 159 659 170 HOH HOH . I 5 HOH A 160 660 110 HOH HOH . I 5 HOH A 161 661 122 HOH HOH . I 5 HOH A 162 662 182 HOH HOH . I 5 HOH A 163 663 123 HOH HOH . I 5 HOH A 164 664 136 HOH HOH . I 5 HOH A 165 665 193 HOH HOH . I 5 HOH A 166 666 192 HOH HOH . I 5 HOH A 167 667 148 HOH HOH . I 5 HOH A 168 668 105 HOH HOH . I 5 HOH A 169 669 80 HOH HOH . I 5 HOH A 170 670 102 HOH HOH . I 5 HOH A 171 671 171 HOH HOH . I 5 HOH A 172 672 101 HOH HOH . I 5 HOH A 173 673 194 HOH HOH . I 5 HOH A 174 674 160 HOH HOH . I 5 HOH A 175 675 179 HOH HOH . I 5 HOH A 176 676 178 HOH HOH . I 5 HOH A 177 677 166 HOH HOH . I 5 HOH A 178 678 112 HOH HOH . I 5 HOH A 179 679 152 HOH HOH . I 5 HOH A 180 680 191 HOH HOH . I 5 HOH A 181 681 196 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 60.595 _atom_site.Cartn_y 66.489 _atom_site.Cartn_z 72.862 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 407 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #