data_6KC5 # _model_server_result.job_id KG7RpmwUcC-Bfig0AtvI8w _model_server_result.datetime_utc '2024-11-22 08:31:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1110}' # _entry.id 6KC5 # _exptl.entry_id 6KC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KC5 _cell.length_a 39.35 _cell.length_b 60.227 _cell.length_c 92.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 B CYS 871 1_555 A SG CYS 46 B CYS 893 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.931 ? metalc ? metalc1 A SG CYS 24 B CYS 871 1_555 B ZN ZN . B ZN 1101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.215 ? metalc ? metalc2 A SG CYS 24 B CYS 871 1_555 B ZN ZN . B ZN 1101 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 A SG CYS 27 B CYS 874 1_555 B ZN ZN . B ZN 1101 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 A SG CYS 27 B CYS 874 1_555 B ZN ZN . B ZN 1101 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.278 ? metalc ? metalc5 A SG CYS 43 B CYS 890 1_555 B ZN ZN . B ZN 1101 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.307 ? metalc ? metalc6 A SG CYS 43 B CYS 890 1_555 B ZN ZN . B ZN 1101 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 A SG CYS 46 B CYS 893 1_555 B ZN ZN . B ZN 1101 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.33 ? metalc ? metalc8 A SG CYS 46 B CYS 893 1_555 B ZN ZN . B ZN 1101 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.331 ? metalc ? metalc9 A SG CYS 51 B CYS 898 1_555 C ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc10 A SG CYS 54 B CYS 901 1_555 C ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc11 A SG CYS 64 B CYS 911 1_555 D ZN ZN . B ZN 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc12 A SG CYS 69 B CYS 916 1_555 D ZN ZN . B ZN 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc13 A NE2 HIS 76 B HIS 923 1_555 D ZN ZN . B ZN 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc14 A NE2 HIS 78 B HIS 925 1_555 D ZN ZN . B ZN 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc15 A ND1 HIS 79 B HIS 926 1_555 C ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc16 A SG CYS 83 B CYS 930 1_555 C ZN ZN . B ZN 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc17 A SG CYS 122 B CYS 969 1_555 E ZN ZN . B ZN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc18 A SG CYS 139 B CYS 986 1_555 E ZN ZN . B ZN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc19 A SG CYS 151 B CYS 998 1_555 E ZN ZN . B ZN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc20 A ND1 HIS 154 B HIS 1001 1_555 E ZN ZN . B ZN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 121 n n N1 C6 EPE sing 122 n n N1 C9 EPE sing 123 n n C2 C3 EPE sing 124 n n C2 H21 EPE sing 125 n n C2 H22 EPE sing 126 n n C3 N4 EPE sing 127 n n C3 H31 EPE sing 128 n n C3 H32 EPE sing 129 n n N4 C5 EPE sing 130 n n N4 C7 EPE sing 131 n n C5 C6 EPE sing 132 n n C5 H51 EPE sing 133 n n C5 H52 EPE sing 134 n n C6 H61 EPE sing 135 n n C6 H62 EPE sing 136 n n C7 C8 EPE sing 137 n n C7 H71 EPE sing 138 n n C7 H72 EPE sing 139 n n C8 O8 EPE sing 140 n n C8 H81 EPE sing 141 n n C8 H82 EPE sing 142 n n O8 HO8 EPE sing 143 n n C9 C10 EPE sing 144 n n C9 H91 EPE sing 145 n n C9 H92 EPE sing 146 n n C10 S EPE sing 147 n n C10 H101 EPE sing 148 n n C10 H102 EPE sing 149 n n S O1S EPE doub 150 n n S O2S EPE doub 151 n n S O3S EPE sing 152 n n O3S HOS3 EPE sing 153 n n # _atom_sites.entry_id 6KC5 _atom_sites.fract_transf_matrix[1][1] 0.025413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN B 1 1101 1101 ZN ZN . C 2 ZN B 1 1102 1102 ZN ZN . D 2 ZN B 1 1103 1103 ZN ZN . E 2 ZN B 1 1104 1104 ZN ZN . F 3 D5U B 1 1105 1 D5U HO1 . G 4 GOL B 1 1106 1 GOL GOL . H 4 GOL B 1 1107 2 GOL GOL . I 4 GOL B 1 1108 3 GOL GOL . J 4 GOL B 1 1109 4 GOL GOL . K 5 EPE B 1 1110 1 EPE EPE . L 6 HOH B 1 1201 77 HOH HOH . L 6 HOH B 2 1202 75 HOH HOH . L 6 HOH B 3 1203 66 HOH HOH . L 6 HOH B 4 1204 98 HOH HOH . L 6 HOH B 5 1205 65 HOH HOH . L 6 HOH B 6 1206 104 HOH HOH . L 6 HOH B 7 1207 15 HOH HOH . L 6 HOH B 8 1208 41 HOH HOH . L 6 HOH B 9 1209 30 HOH HOH . L 6 HOH B 10 1210 49 HOH HOH . L 6 HOH B 11 1211 81 HOH HOH . L 6 HOH B 12 1212 70 HOH HOH . L 6 HOH B 13 1213 73 HOH HOH . L 6 HOH B 14 1214 19 HOH HOH . L 6 HOH B 15 1215 14 HOH HOH . L 6 HOH B 16 1216 33 HOH HOH . L 6 HOH B 17 1217 58 HOH HOH . L 6 HOH B 18 1218 92 HOH HOH . L 6 HOH B 19 1219 27 HOH HOH . L 6 HOH B 20 1220 124 HOH HOH . L 6 HOH B 21 1221 1 HOH HOH . L 6 HOH B 22 1222 45 HOH HOH . L 6 HOH B 23 1223 87 HOH HOH . L 6 HOH B 24 1224 113 HOH HOH . L 6 HOH B 25 1225 40 HOH HOH . L 6 HOH B 26 1226 23 HOH HOH . L 6 HOH B 27 1227 7 HOH HOH . L 6 HOH B 28 1228 29 HOH HOH . L 6 HOH B 29 1229 2 HOH HOH . L 6 HOH B 30 1230 85 HOH HOH . L 6 HOH B 31 1231 67 HOH HOH . L 6 HOH B 32 1232 20 HOH HOH . L 6 HOH B 33 1233 11 HOH HOH . L 6 HOH B 34 1234 25 HOH HOH . L 6 HOH B 35 1235 125 HOH HOH . L 6 HOH B 36 1236 31 HOH HOH . L 6 HOH B 37 1237 50 HOH HOH . L 6 HOH B 38 1238 76 HOH HOH . L 6 HOH B 39 1239 6 HOH HOH . L 6 HOH B 40 1240 54 HOH HOH . L 6 HOH B 41 1241 17 HOH HOH . L 6 HOH B 42 1242 16 HOH HOH . L 6 HOH B 43 1243 102 HOH HOH . L 6 HOH B 44 1244 57 HOH HOH . L 6 HOH B 45 1245 109 HOH HOH . L 6 HOH B 46 1246 46 HOH HOH . L 6 HOH B 47 1247 114 HOH HOH . L 6 HOH B 48 1248 35 HOH HOH . L 6 HOH B 49 1249 80 HOH HOH . L 6 HOH B 50 1250 10 HOH HOH . L 6 HOH B 51 1251 112 HOH HOH . L 6 HOH B 52 1252 5 HOH HOH . L 6 HOH B 53 1253 26 HOH HOH . L 6 HOH B 54 1254 8 HOH HOH . L 6 HOH B 55 1255 21 HOH HOH . L 6 HOH B 56 1256 61 HOH HOH . L 6 HOH B 57 1257 24 HOH HOH . L 6 HOH B 58 1258 9 HOH HOH . L 6 HOH B 59 1259 83 HOH HOH . L 6 HOH B 60 1260 18 HOH HOH . L 6 HOH B 61 1261 126 HOH HOH . L 6 HOH B 62 1262 121 HOH HOH . L 6 HOH B 63 1263 32 HOH HOH . L 6 HOH B 64 1264 93 HOH HOH . L 6 HOH B 65 1265 101 HOH HOH . L 6 HOH B 66 1266 28 HOH HOH . L 6 HOH B 67 1267 59 HOH HOH . L 6 HOH B 68 1268 51 HOH HOH . L 6 HOH B 69 1269 84 HOH HOH . L 6 HOH B 70 1270 42 HOH HOH . L 6 HOH B 71 1271 47 HOH HOH . L 6 HOH B 72 1272 68 HOH HOH . L 6 HOH B 73 1273 72 HOH HOH . L 6 HOH B 74 1274 39 HOH HOH . L 6 HOH B 75 1275 94 HOH HOH . L 6 HOH B 76 1276 36 HOH HOH . L 6 HOH B 77 1277 97 HOH HOH . L 6 HOH B 78 1278 13 HOH HOH . L 6 HOH B 79 1279 105 HOH HOH . L 6 HOH B 80 1280 12 HOH HOH . L 6 HOH B 81 1281 99 HOH HOH . L 6 HOH B 82 1282 44 HOH HOH . L 6 HOH B 83 1283 52 HOH HOH . L 6 HOH B 84 1284 106 HOH HOH . L 6 HOH B 85 1285 115 HOH HOH . L 6 HOH B 86 1286 60 HOH HOH . L 6 HOH B 87 1287 56 HOH HOH . L 6 HOH B 88 1288 38 HOH HOH . L 6 HOH B 89 1289 120 HOH HOH . L 6 HOH B 90 1290 3 HOH HOH . L 6 HOH B 91 1291 48 HOH HOH . L 6 HOH B 92 1292 88 HOH HOH . L 6 HOH B 93 1293 108 HOH HOH . L 6 HOH B 94 1294 22 HOH HOH . L 6 HOH B 95 1295 129 HOH HOH . L 6 HOH B 96 1296 86 HOH HOH . L 6 HOH B 97 1297 111 HOH HOH . L 6 HOH B 98 1298 116 HOH HOH . L 6 HOH B 99 1299 117 HOH HOH . L 6 HOH B 100 1300 62 HOH HOH . L 6 HOH B 101 1301 96 HOH HOH . L 6 HOH B 102 1302 118 HOH HOH . L 6 HOH B 103 1303 123 HOH HOH . L 6 HOH B 104 1304 34 HOH HOH . L 6 HOH B 105 1305 91 HOH HOH . L 6 HOH B 106 1306 82 HOH HOH . L 6 HOH B 107 1307 103 HOH HOH . L 6 HOH B 108 1308 122 HOH HOH . L 6 HOH B 109 1309 95 HOH HOH . L 6 HOH B 110 1310 79 HOH HOH . L 6 HOH B 111 1311 43 HOH HOH . L 6 HOH B 112 1312 89 HOH HOH . L 6 HOH B 113 1313 119 HOH HOH . L 6 HOH B 114 1314 128 HOH HOH . L 6 HOH B 115 1315 74 HOH HOH . L 6 HOH B 116 1316 55 HOH HOH . L 6 HOH B 117 1317 37 HOH HOH . L 6 HOH B 118 1318 127 HOH HOH . L 6 HOH B 119 1319 130 HOH HOH . L 6 HOH B 120 1320 100 HOH HOH . L 6 HOH B 121 1321 53 HOH HOH . L 6 HOH B 122 1322 78 HOH HOH . L 6 HOH B 123 1323 63 HOH HOH . L 6 HOH B 124 1324 69 HOH HOH . L 6 HOH B 125 1325 64 HOH HOH . L 6 HOH B 126 1326 107 HOH HOH . L 6 HOH B 127 1327 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . K 5 -15.943 -11.487 16.739 1 60.08 ? N1 EPE 1110 B 1 HETATM 2 C C2 EPE . . . K 5 -17.379 -11.652 16.451 1 63.92 ? C2 EPE 1110 B 1 HETATM 3 C C3 EPE . . . K 5 -17.588 -12.36 15.115 1 60.67 ? C3 EPE 1110 B 1 HETATM 4 N N4 EPE . . . K 5 -16.777 -11.807 14.042 1 60.24 ? N4 EPE 1110 B 1 HETATM 5 C C5 EPE . . . K 5 -15.427 -11.374 14.342 1 54.8 ? C5 EPE 1110 B 1 HETATM 6 C C6 EPE . . . K 5 -15.323 -10.664 15.688 1 54.88 ? C6 EPE 1110 B 1 HETATM 7 C C7 EPE . . . K 5 -17.037 -12.265 12.69 1 59.45 ? C7 EPE 1110 B 1 HETATM 8 C C8 EPE . . . K 5 -18.217 -11.549 12.048 1 67.44 ? C8 EPE 1110 B 1 HETATM 9 O O8 EPE . . . K 5 -17.763 -10.777 10.956 1 70.55 ? O8 EPE 1110 B 1 HETATM 10 C C9 EPE . . . K 5 -15.807 -10.775 18.019 1 54.51 ? C9 EPE 1110 B 1 HETATM 11 C C10 EPE . . . K 5 -15.498 -11.747 19.147 1 51.19 ? C10 EPE 1110 B 1 HETATM 12 S S EPE . . . K 5 -15.175 -10.87 20.701 1 46.97 ? S EPE 1110 B 1 HETATM 13 O O1S EPE . . . K 5 -16.151 -9.797 20.887 1 62.1 ? O1S EPE 1110 B 1 HETATM 14 O O2S EPE . . . K 5 -13.838 -10.313 20.66 1 28.25 ? O2S EPE 1110 B 1 HETATM 15 O O3S EPE . . . K 5 -15.271 -11.83 21.801 1 56.03 ? O3S EPE 1110 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #