data_6KCJ # _model_server_result.job_id VKqNhNb6O-j5yOY6wGP7XA _model_server_result.datetime_utc '2025-08-31 12:53:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kcj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6KCJ # _exptl.entry_id 6KCJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6KCJ _cell.length_a 110.439 _cell.length_b 110.439 _cell.length_c 314.139 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KCJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -y+1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 165.6585 -95.64298 0 3 'crystal symmetry operation' 3_765 -x+y+2,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 165.6585 95.64298 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 45 A CYS 7 1_555 A SG CYS 504 A CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 83 A CYS 45 1_555 A SG CYS 315 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 96 A CYS 58 1_555 A SG CYS 108 A CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf4 A SG CYS 319 A CYS 281 1_555 A SG CYS 343 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? covale ? covale1 A ND2 ASN 95 A ASN 57 1_555 B C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6KCJ _atom_sites.fract_transf_matrix[1][1] 0.009055 _atom_sites.fract_transf_matrix[1][2] 0.005228 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 601 507 NAG NAG . C 3 HOH A 1 701 1 HOH HOH . C 3 HOH A 2 702 22 HOH HOH . C 3 HOH A 3 703 23 HOH HOH . C 3 HOH A 4 704 75 HOH HOH . C 3 HOH A 5 705 18 HOH HOH . C 3 HOH A 6 706 53 HOH HOH . C 3 HOH A 7 707 95 HOH HOH . C 3 HOH A 8 708 108 HOH HOH . C 3 HOH A 9 709 70 HOH HOH . C 3 HOH A 10 710 56 HOH HOH . C 3 HOH A 11 711 5 HOH HOH . C 3 HOH A 12 712 68 HOH HOH . C 3 HOH A 13 713 8 HOH HOH . C 3 HOH A 14 714 112 HOH HOH . C 3 HOH A 15 715 10 HOH HOH . C 3 HOH A 16 716 29 HOH HOH . C 3 HOH A 17 717 105 HOH HOH . C 3 HOH A 18 718 66 HOH HOH . C 3 HOH A 19 719 80 HOH HOH . C 3 HOH A 20 720 4 HOH HOH . C 3 HOH A 21 721 81 HOH HOH . C 3 HOH A 22 722 41 HOH HOH . C 3 HOH A 23 723 14 HOH HOH . C 3 HOH A 24 724 32 HOH HOH . C 3 HOH A 25 725 44 HOH HOH . C 3 HOH A 26 726 2 HOH HOH . C 3 HOH A 27 727 38 HOH HOH . C 3 HOH A 28 728 106 HOH HOH . C 3 HOH A 29 729 52 HOH HOH . C 3 HOH A 30 730 6 HOH HOH . C 3 HOH A 31 731 71 HOH HOH . C 3 HOH A 32 732 50 HOH HOH . C 3 HOH A 33 733 40 HOH HOH . C 3 HOH A 34 734 11 HOH HOH . C 3 HOH A 35 735 94 HOH HOH . C 3 HOH A 36 736 35 HOH HOH . C 3 HOH A 37 737 31 HOH HOH . C 3 HOH A 38 738 21 HOH HOH . C 3 HOH A 39 739 97 HOH HOH . C 3 HOH A 40 740 17 HOH HOH . C 3 HOH A 41 741 9 HOH HOH . C 3 HOH A 42 742 26 HOH HOH . C 3 HOH A 43 743 57 HOH HOH . C 3 HOH A 44 744 15 HOH HOH . C 3 HOH A 45 745 88 HOH HOH . C 3 HOH A 46 746 30 HOH HOH . C 3 HOH A 47 747 60 HOH HOH . C 3 HOH A 48 748 100 HOH HOH . C 3 HOH A 49 749 51 HOH HOH . C 3 HOH A 50 750 62 HOH HOH . C 3 HOH A 51 751 109 HOH HOH . C 3 HOH A 52 752 7 HOH HOH . C 3 HOH A 53 753 65 HOH HOH . C 3 HOH A 54 754 13 HOH HOH . C 3 HOH A 55 755 24 HOH HOH . C 3 HOH A 56 756 69 HOH HOH . C 3 HOH A 57 757 73 HOH HOH . C 3 HOH A 58 758 82 HOH HOH . C 3 HOH A 59 759 19 HOH HOH . C 3 HOH A 60 760 61 HOH HOH . C 3 HOH A 61 761 63 HOH HOH . C 3 HOH A 62 762 20 HOH HOH . C 3 HOH A 63 763 34 HOH HOH . C 3 HOH A 64 764 103 HOH HOH . C 3 HOH A 65 765 89 HOH HOH . C 3 HOH A 66 766 46 HOH HOH . C 3 HOH A 67 767 39 HOH HOH . C 3 HOH A 68 768 45 HOH HOH . C 3 HOH A 69 769 98 HOH HOH . C 3 HOH A 70 770 28 HOH HOH . C 3 HOH A 71 771 111 HOH HOH . C 3 HOH A 72 772 59 HOH HOH . C 3 HOH A 73 773 84 HOH HOH . C 3 HOH A 74 774 64 HOH HOH . C 3 HOH A 75 775 43 HOH HOH . C 3 HOH A 76 776 25 HOH HOH . C 3 HOH A 77 777 47 HOH HOH . C 3 HOH A 78 778 78 HOH HOH . C 3 HOH A 79 779 27 HOH HOH . C 3 HOH A 80 780 3 HOH HOH . C 3 HOH A 81 781 49 HOH HOH . C 3 HOH A 82 782 67 HOH HOH . C 3 HOH A 83 783 12 HOH HOH . C 3 HOH A 84 784 37 HOH HOH . C 3 HOH A 85 785 79 HOH HOH . C 3 HOH A 86 786 74 HOH HOH . C 3 HOH A 87 787 42 HOH HOH . C 3 HOH A 88 788 55 HOH HOH . C 3 HOH A 89 789 76 HOH HOH . C 3 HOH A 90 790 101 HOH HOH . C 3 HOH A 91 791 113 HOH HOH . C 3 HOH A 92 792 86 HOH HOH . C 3 HOH A 93 793 36 HOH HOH . C 3 HOH A 94 794 87 HOH HOH . C 3 HOH A 95 795 48 HOH HOH . C 3 HOH A 96 796 58 HOH HOH . C 3 HOH A 97 797 85 HOH HOH . C 3 HOH A 98 798 91 HOH HOH . C 3 HOH A 99 799 72 HOH HOH . C 3 HOH A 100 800 102 HOH HOH . C 3 HOH A 101 801 16 HOH HOH . C 3 HOH A 102 802 54 HOH HOH . C 3 HOH A 103 803 90 HOH HOH . C 3 HOH A 104 804 92 HOH HOH . C 3 HOH A 105 805 107 HOH HOH . C 3 HOH A 106 806 93 HOH HOH . C 3 HOH A 107 807 104 HOH HOH . C 3 HOH A 108 808 77 HOH HOH . C 3 HOH A 109 809 33 HOH HOH . C 3 HOH A 110 810 96 HOH HOH . C 3 HOH A 111 811 99 HOH HOH . C 3 HOH A 112 812 110 HOH HOH . C 3 HOH A 113 813 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 138.372 -18.736 41.077 1 77.72 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . B 2 138.905 -20.197 41.299 1 91.23 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . B 2 140.431 -20.277 41.584 1 91.5 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . B 2 141.248 -19.19 40.9 1 97.93 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . B 2 140.537 -17.878 41.116 1 86.02 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . B 2 141.273 -16.665 40.615 1 86.48 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . B 2 137.361 -21.848 42.279 1 98.21 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . B 2 136.681 -22.299 43.539 1 93.67 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . B 2 138.169 -20.793 42.402 1 98.77 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . B 2 140.896 -21.557 41.164 1 80.68 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . B 2 142.563 -19.129 41.447 1 107.82 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . B 2 139.318 -17.969 40.391 1 77.12 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . B 2 141.093 -15.6 41.54 1 92.13 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . B 2 137.19 -22.417 41.201 1 96.33 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 425 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #