data_6KCT
#
_model_server_result.job_id            hqpa6s661K7aiUHV2yZQcA 
_model_server_result.datetime_utc      '2024-11-27 01:19:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kct 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":601}' 
#
_entry.id    6KCT 
#
_exptl.entry_id    6KCT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              274.312 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(cyclohexylmethyl)-6,8-bis(oxidanyl)isochromen-1-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         76.76 
_cell.angle_beta          72.8 
_cell.angle_gamma         80.03 
_cell.entry_id            6KCT 
_cell.length_a            71.112 
_cell.length_b            89.703 
_cell.length_c            100.049 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KCT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C16 H18 O4' 
_chem_comp.formula_weight    274.312 
_chem_comp.id                D5O 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(cyclohexylmethyl)-6,8-bis(oxidanyl)isochromen-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C3 D5O sing 83 n n 
C3 C4 D5O sing 84 n y 
C3 C2 D5O doub 85 n y 
C4 C5 D5O doub 86 n y 
C2 C1 D5O sing 87 n y 
C5 C6 D5O sing 88 n n 
C5 C9 D5O sing 89 n y 
C1 C9 D5O doub 90 n y 
C1 O1 D5O sing 91 n n 
C6 C7 D5O doub 92 n n 
C9 C8 D5O sing 93 n n 
C7 C10 D5O sing 94 n n 
C7 O3 D5O sing 95 n n 
C8 O3 D5O sing 96 n n 
C8 O4 D5O doub 97 n n 
C10 C11 D5O sing 98 n n 
C17 C11 D5O sing 99 n n 
C17 C12 D5O sing 100 n n 
C11 C15 D5O sing 101 n n 
C12 C13 D5O sing 102 n n 
C15 C14 D5O sing 103 n n 
C13 C14 D5O sing 104 n n 
C10 H1 D5O sing 105 n n 
C10 H2 D5O sing 106 n n 
C11 H3 D5O sing 107 n n 
C12 H4 D5O sing 108 n n 
C12 H5 D5O sing 109 n n 
C13 H6 D5O sing 110 n n 
C13 H7 D5O sing 111 n n 
C14 H8 D5O sing 112 n n 
C14 H9 D5O sing 113 n n 
C15 H10 D5O sing 114 n n 
C15 H11 D5O sing 115 n n 
C17 H12 D5O sing 116 n n 
C17 H13 D5O sing 117 n n 
C2 H14 D5O sing 118 n n 
C4 H15 D5O sing 119 n n 
C6 H16 D5O sing 120 n n 
O1 H17 D5O sing 121 n n 
O2 H18 D5O sing 122 n n 
#
_atom_sites.entry_id                     6KCT 
_atom_sites.fract_transf_matrix[1][1]    0.014062 
_atom_sites.fract_transf_matrix[1][2]    -0.002473 
_atom_sites.fract_transf_matrix[1][3]    -0.003958 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011319 
_atom_sites.fract_transf_matrix[2][3]    -0.002179 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010655 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 D5O A 1 601 1 D5O KRU . 
F 3 LYS A 1 602 1 LYS LYS . 
G 2 D5O B 1 601 2 D5O KRU . 
H 3 LYS B 1 602 2 LYS LYS . 
I 2 D5O C 1 601 3 D5O KRU . 
J 3 LYS C 1 602 3 LYS LYS . 
K 2 D5O D 1 601 4 D5O KRU . 
L 3 LYS D 1 602 4 LYS LYS . 
M 4 HOH A 1 701 41 HOH HOH . 
M 4 HOH A 2 702 101 HOH HOH . 
M 4 HOH A 3 703 953 HOH HOH . 
M 4 HOH A 4 704 279 HOH HOH . 
M 4 HOH A 5 705 50 HOH HOH . 
M 4 HOH A 6 706 613 HOH HOH . 
M 4 HOH A 7 707 748 HOH HOH . 
M 4 HOH A 8 708 449 HOH HOH . 
M 4 HOH A 9 709 728 HOH HOH . 
M 4 HOH A 10 710 938 HOH HOH . 
M 4 HOH A 11 711 464 HOH HOH . 
M 4 HOH A 12 712 722 HOH HOH . 
M 4 HOH A 13 713 610 HOH HOH . 
M 4 HOH A 14 714 506 HOH HOH . 
M 4 HOH A 15 715 98 HOH HOH . 
M 4 HOH A 16 716 817 HOH HOH . 
M 4 HOH A 17 717 915 HOH HOH . 
M 4 HOH A 18 718 685 HOH HOH . 
M 4 HOH A 19 719 979 HOH HOH . 
M 4 HOH A 20 720 798 HOH HOH . 
M 4 HOH A 21 721 740 HOH HOH . 
N 4 HOH B 1 701 745 HOH HOH . 
N 4 HOH B 2 702 962 HOH HOH . 
N 4 HOH B 3 703 615 HOH HOH . 
N 4 HOH B 4 704 6 HOH HOH . 
N 4 HOH B 5 705 831 HOH HOH . 
N 4 HOH B 6 706 496 HOH HOH . 
N 4 HOH B 7 707 867 HOH HOH . 
N 4 HOH B 8 708 116 HOH HOH . 
N 4 HOH B 9 709 980 HOH HOH . 
N 4 HOH B 10 710 811 HOH HOH . 
N 4 HOH B 11 711 608 HOH HOH . 
N 4 HOH B 12 712 833 HOH HOH . 
N 4 HOH B 13 713 406 HOH HOH . 
N 4 HOH B 14 714 981 HOH HOH . 
N 4 HOH B 15 715 855 HOH HOH . 
N 4 HOH B 16 716 595 HOH HOH . 
N 4 HOH B 17 717 895 HOH HOH . 
N 4 HOH B 18 718 636 HOH HOH . 
N 4 HOH B 19 719 819 HOH HOH . 
N 4 HOH B 20 720 725 HOH HOH . 
O 4 HOH C 1 701 904 HOH HOH . 
O 4 HOH C 2 702 886 HOH HOH . 
O 4 HOH C 3 703 652 HOH HOH . 
O 4 HOH C 4 704 34 HOH HOH . 
O 4 HOH C 5 705 118 HOH HOH . 
O 4 HOH C 6 706 972 HOH HOH . 
O 4 HOH C 7 707 135 HOH HOH . 
O 4 HOH C 8 708 278 HOH HOH . 
O 4 HOH C 9 709 321 HOH HOH . 
O 4 HOH C 10 710 522 HOH HOH . 
O 4 HOH C 11 711 579 HOH HOH . 
O 4 HOH C 12 712 937 HOH HOH . 
O 4 HOH C 13 713 230 HOH HOH . 
O 4 HOH C 14 714 978 HOH HOH . 
O 4 HOH C 15 715 333 HOH HOH . 
O 4 HOH C 16 716 890 HOH HOH . 
O 4 HOH C 17 717 869 HOH HOH . 
O 4 HOH C 18 718 325 HOH HOH . 
O 4 HOH C 19 719 874 HOH HOH . 
O 4 HOH C 20 720 868 HOH HOH . 
P 4 HOH D 1 701 48 HOH HOH . 
P 4 HOH D 2 702 899 HOH HOH . 
P 4 HOH D 3 703 687 HOH HOH . 
P 4 HOH D 4 704 887 HOH HOH . 
P 4 HOH D 5 705 731 HOH HOH . 
P 4 HOH D 6 706 413 HOH HOH . 
P 4 HOH D 7 707 888 HOH HOH . 
P 4 HOH D 8 708 659 HOH HOH . 
P 4 HOH D 9 709 936 HOH HOH . 
P 4 HOH D 10 710 897 HOH HOH . 
P 4 HOH D 11 711 964 HOH HOH . 
P 4 HOH D 12 712 931 HOH HOH . 
P 4 HOH D 13 713 602 HOH HOH . 
P 4 HOH D 14 714 707 HOH HOH . 
P 4 HOH D 15 715 54 HOH HOH . 
P 4 HOH D 16 716 730 HOH HOH . 
P 4 HOH D 17 717 618 HOH HOH . 
P 4 HOH D 18 718 873 HOH HOH . 
P 4 HOH D 19 719 716 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 D5O . . . K 2 5.084 30.603 30.722 1 40.8 ? C1 D5O 601 D 1 
HETATM 2 C C10 D5O . . . K 2 4.229 36.105 31.766 1 41.13 ? C10 D5O 601 D 1 
HETATM 3 C C11 D5O . . . K 2 4.467 36.381 33.241 1 40.25 ? C11 D5O 601 D 1 
HETATM 4 C C12 D5O . . . K 2 3.32 36.261 35.498 1 39.56 ? C12 D5O 601 D 1 
HETATM 5 C C13 D5O . . . K 2 3.432 37.777 35.615 1 40.53 ? C13 D5O 601 D 1 
HETATM 6 C C14 D5O . . . K 2 4.673 38.272 34.885 1 40.85 ? C14 D5O 601 D 1 
HETATM 7 C C15 D5O . . . K 2 4.586 37.887 33.417 1 40.68 ? C15 D5O 601 D 1 
HETATM 8 C C17 D5O . . . K 2 3.291 35.824 34.038 1 39.35 ? C17 D5O 601 D 1 
HETATM 9 C C2 D5O . . . K 2 4.141 29.895 29.99 1 40.58 ? C2 D5O 601 D 1 
HETATM 10 C C3 D5O . . . K 2 2.999 30.529 29.516 1 40.63 ? C3 D5O 601 D 1 
HETATM 11 C C4 D5O . . . K 2 2.799 31.877 29.777 1 41.73 ? C4 D5O 601 D 1 
HETATM 12 C C5 D5O . . . K 2 3.742 32.582 30.51 1 42.12 ? C5 D5O 601 D 1 
HETATM 13 C C6 D5O . . . K 2 3.549 33.927 30.772 1 42.21 ? C6 D5O 601 D 1 
HETATM 14 C C7 D5O . . . K 2 4.482 34.645 31.508 1 42.17 ? C7 D5O 601 D 1 
HETATM 15 C C8 D5O . . . K 2 5.87 32.733 31.762 1 42.94 ? C8 D5O 601 D 1 
HETATM 16 C C9 D5O . . . K 2 4.88 31.948 30.981 1 42.09 ? C9 D5O 601 D 1 
HETATM 17 O O1 D5O . . . K 2 6.202 29.982 31.186 1 39.92 ? O1 D5O 601 D 1 
HETATM 18 O O2 D5O . . . K 2 2.078 29.832 28.797 1 39.82 ? O2 D5O 601 D 1 
HETATM 19 O O3 D5O . . . K 2 5.624 34.058 31.992 1 43.04 ? O3 D5O 601 D 1 
HETATM 20 O O4 D5O . . . K 2 6.907 32.193 32.203 1 43.13 ? O4 D5O 601 D 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#