data_6KCT
#
_model_server_result.job_id            O1IdagPIMklil4q20SDKqg 
_model_server_result.datetime_utc      '2024-11-23 09:14:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kct 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":602}' 
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_entry.id    6KCT 
#
_exptl.entry_id    6KCT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.195 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            LYSINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         76.76 
_cell.angle_beta          72.8 
_cell.angle_gamma         80.03 
_cell.entry_id            6KCT 
_cell.length_a            71.112 
_cell.length_b            89.703 
_cell.length_c            100.049 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KCT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C6 H15 N2 O2 1' 
_chem_comp.formula_weight    147.195 
_chem_comp.id                LYS 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              LYSINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA LYS sing 234 n n 
N H LYS sing 235 n n 
N H2 LYS sing 236 n n 
CA C LYS sing 237 n n 
CA CB LYS sing 238 n n 
CA HA LYS sing 239 n n 
C O LYS doub 240 n n 
C OXT LYS sing 241 n n 
CB CG LYS sing 242 n n 
CB HB2 LYS sing 243 n n 
CB HB3 LYS sing 244 n n 
CG CD LYS sing 245 n n 
CG HG2 LYS sing 246 n n 
CG HG3 LYS sing 247 n n 
CD CE LYS sing 248 n n 
CD HD2 LYS sing 249 n n 
CD HD3 LYS sing 250 n n 
CE NZ LYS sing 251 n n 
CE HE2 LYS sing 252 n n 
CE HE3 LYS sing 253 n n 
NZ HZ1 LYS sing 254 n n 
NZ HZ2 LYS sing 255 n n 
NZ HZ3 LYS sing 256 n n 
OXT HXT LYS sing 257 n n 
#
_atom_sites.entry_id                     6KCT 
_atom_sites.fract_transf_matrix[1][1]    0.014062 
_atom_sites.fract_transf_matrix[1][2]    -0.002473 
_atom_sites.fract_transf_matrix[1][3]    -0.003958 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011319 
_atom_sites.fract_transf_matrix[2][3]    -0.002179 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010655 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 D5O A 1 601 1 D5O KRU . 
F 3 LYS A 1 602 1 LYS LYS . 
G 2 D5O B 1 601 2 D5O KRU . 
H 3 LYS B 1 602 2 LYS LYS . 
I 2 D5O C 1 601 3 D5O KRU . 
J 3 LYS C 1 602 3 LYS LYS . 
K 2 D5O D 1 601 4 D5O KRU . 
L 3 LYS D 1 602 4 LYS LYS . 
M 4 HOH A 1 701 41 HOH HOH . 
M 4 HOH A 2 702 101 HOH HOH . 
M 4 HOH A 3 703 953 HOH HOH . 
M 4 HOH A 4 704 279 HOH HOH . 
M 4 HOH A 5 705 50 HOH HOH . 
M 4 HOH A 6 706 613 HOH HOH . 
M 4 HOH A 7 707 748 HOH HOH . 
M 4 HOH A 8 708 449 HOH HOH . 
M 4 HOH A 9 709 728 HOH HOH . 
M 4 HOH A 10 710 938 HOH HOH . 
M 4 HOH A 11 711 464 HOH HOH . 
M 4 HOH A 12 712 722 HOH HOH . 
M 4 HOH A 13 713 610 HOH HOH . 
M 4 HOH A 14 714 506 HOH HOH . 
M 4 HOH A 15 715 98 HOH HOH . 
M 4 HOH A 16 716 817 HOH HOH . 
M 4 HOH A 17 717 915 HOH HOH . 
M 4 HOH A 18 718 685 HOH HOH . 
M 4 HOH A 19 719 979 HOH HOH . 
M 4 HOH A 20 720 798 HOH HOH . 
M 4 HOH A 21 721 740 HOH HOH . 
N 4 HOH B 1 701 745 HOH HOH . 
N 4 HOH B 2 702 962 HOH HOH . 
N 4 HOH B 3 703 615 HOH HOH . 
N 4 HOH B 4 704 6 HOH HOH . 
N 4 HOH B 5 705 831 HOH HOH . 
N 4 HOH B 6 706 496 HOH HOH . 
N 4 HOH B 7 707 867 HOH HOH . 
N 4 HOH B 8 708 116 HOH HOH . 
N 4 HOH B 9 709 980 HOH HOH . 
N 4 HOH B 10 710 811 HOH HOH . 
N 4 HOH B 11 711 608 HOH HOH . 
N 4 HOH B 12 712 833 HOH HOH . 
N 4 HOH B 13 713 406 HOH HOH . 
N 4 HOH B 14 714 981 HOH HOH . 
N 4 HOH B 15 715 855 HOH HOH . 
N 4 HOH B 16 716 595 HOH HOH . 
N 4 HOH B 17 717 895 HOH HOH . 
N 4 HOH B 18 718 636 HOH HOH . 
N 4 HOH B 19 719 819 HOH HOH . 
N 4 HOH B 20 720 725 HOH HOH . 
O 4 HOH C 1 701 904 HOH HOH . 
O 4 HOH C 2 702 886 HOH HOH . 
O 4 HOH C 3 703 652 HOH HOH . 
O 4 HOH C 4 704 34 HOH HOH . 
O 4 HOH C 5 705 118 HOH HOH . 
O 4 HOH C 6 706 972 HOH HOH . 
O 4 HOH C 7 707 135 HOH HOH . 
O 4 HOH C 8 708 278 HOH HOH . 
O 4 HOH C 9 709 321 HOH HOH . 
O 4 HOH C 10 710 522 HOH HOH . 
O 4 HOH C 11 711 579 HOH HOH . 
O 4 HOH C 12 712 937 HOH HOH . 
O 4 HOH C 13 713 230 HOH HOH . 
O 4 HOH C 14 714 978 HOH HOH . 
O 4 HOH C 15 715 333 HOH HOH . 
O 4 HOH C 16 716 890 HOH HOH . 
O 4 HOH C 17 717 869 HOH HOH . 
O 4 HOH C 18 718 325 HOH HOH . 
O 4 HOH C 19 719 874 HOH HOH . 
O 4 HOH C 20 720 868 HOH HOH . 
P 4 HOH D 1 701 48 HOH HOH . 
P 4 HOH D 2 702 899 HOH HOH . 
P 4 HOH D 3 703 687 HOH HOH . 
P 4 HOH D 4 704 887 HOH HOH . 
P 4 HOH D 5 705 731 HOH HOH . 
P 4 HOH D 6 706 413 HOH HOH . 
P 4 HOH D 7 707 888 HOH HOH . 
P 4 HOH D 8 708 659 HOH HOH . 
P 4 HOH D 9 709 936 HOH HOH . 
P 4 HOH D 10 710 897 HOH HOH . 
P 4 HOH D 11 711 964 HOH HOH . 
P 4 HOH D 12 712 931 HOH HOH . 
P 4 HOH D 13 713 602 HOH HOH . 
P 4 HOH D 14 714 707 HOH HOH . 
P 4 HOH D 15 715 54 HOH HOH . 
P 4 HOH D 16 716 730 HOH HOH . 
P 4 HOH D 17 717 618 HOH HOH . 
P 4 HOH D 18 718 873 HOH HOH . 
P 4 HOH D 19 719 716 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N LYS . . . J 3 2.039 9.799 48.456 1 56.36 ? N LYS 602 C 1 
HETATM 2 C CA LYS . . . J 3 1.551 9.373 49.764 1 56.32 ? CA LYS 602 C 1 
HETATM 3 C C LYS . . . J 3 0.05 9.545 49.921 1 56.68 ? C LYS 602 C 1 
HETATM 4 O O LYS . . . J 3 -0.6 10.211 49.119 1 56.81 ? O LYS 602 C 1 
HETATM 5 C CB LYS . . . J 3 2.274 10.144 50.859 1 56.33 ? CB LYS 602 C 1 
HETATM 6 C CG LYS . . . J 3 3.678 9.708 51.014 1 56.34 ? CG LYS 602 C 1 
HETATM 7 C CD LYS . . . J 3 3.715 8.482 51.832 1 56.39 ? CD LYS 602 C 1 
HETATM 8 C CE LYS . . . J 3 5.042 7.922 51.675 1 55.42 ? CE LYS 602 C 1 
HETATM 9 N NZ LYS . . . J 3 6.18 8.758 51.972 1 54.72 ? NZ LYS 602 C 1 
HETATM 10 O OXT LYS . . . J 3 -0.537 9.01 50.86 1 57.13 ? OXT LYS 602 C 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#