data_6KDR
#
_model_server_result.job_id            8UmtqhzD85OSwLyqWz0S9g 
_model_server_result.datetime_utc      '2024-11-22 22:10:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kdr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":302}' 
#
_entry.id    6KDR 
#
_exptl.entry_id    6KDR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KDR 
_cell.length_a            70.548 
_cell.length_b            96.534 
_cell.length_c            100.213 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KDR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
? 4 J N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6KDR 
_atom_sites.fract_transf_matrix[1][1]    0.014175 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010359 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009979 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SAH A 1 301 2 SAH SAH . 
F 4 GOL A 1 302 1 GOL GOL . 
G 5 CL A 1 303 6 CL CL . 
H 3 SAH B 1 301 1 SAH SAH . 
I 4 GOL B 1 302 2 GOL GOL . 
J 4 GOL B 1 303 3 GOL GOL . 
K 5 CL B 1 304 5 CL CL . 
L 5 CL E 1 101 4 CL CL . 
M 6 HOH A 1 401 194 HOH HOH . 
M 6 HOH A 2 402 240 HOH HOH . 
M 6 HOH A 3 403 225 HOH HOH . 
M 6 HOH A 4 404 136 HOH HOH . 
M 6 HOH A 5 405 146 HOH HOH . 
M 6 HOH A 6 406 164 HOH HOH . 
M 6 HOH A 7 407 28 HOH HOH . 
M 6 HOH A 8 408 12 HOH HOH . 
M 6 HOH A 9 409 39 HOH HOH . 
M 6 HOH A 10 410 159 HOH HOH . 
M 6 HOH A 11 411 96 HOH HOH . 
M 6 HOH A 12 412 81 HOH HOH . 
M 6 HOH A 13 413 141 HOH HOH . 
M 6 HOH A 14 414 49 HOH HOH . 
M 6 HOH A 15 415 211 HOH HOH . 
M 6 HOH A 16 416 80 HOH HOH . 
M 6 HOH A 17 417 244 HOH HOH . 
M 6 HOH A 18 418 37 HOH HOH . 
M 6 HOH A 19 419 56 HOH HOH . 
M 6 HOH A 20 420 124 HOH HOH . 
M 6 HOH A 21 421 125 HOH HOH . 
M 6 HOH A 22 422 145 HOH HOH . 
M 6 HOH A 23 423 167 HOH HOH . 
M 6 HOH A 24 424 24 HOH HOH . 
M 6 HOH A 25 425 70 HOH HOH . 
M 6 HOH A 26 426 187 HOH HOH . 
M 6 HOH A 27 427 178 HOH HOH . 
M 6 HOH A 28 428 114 HOH HOH . 
M 6 HOH A 29 429 5 HOH HOH . 
M 6 HOH A 30 430 72 HOH HOH . 
M 6 HOH A 31 431 148 HOH HOH . 
M 6 HOH A 32 432 135 HOH HOH . 
M 6 HOH A 33 433 112 HOH HOH . 
M 6 HOH A 34 434 65 HOH HOH . 
M 6 HOH A 35 435 17 HOH HOH . 
M 6 HOH A 36 436 14 HOH HOH . 
M 6 HOH A 37 437 6 HOH HOH . 
M 6 HOH A 38 438 48 HOH HOH . 
M 6 HOH A 39 439 160 HOH HOH . 
M 6 HOH A 40 440 36 HOH HOH . 
M 6 HOH A 41 441 54 HOH HOH . 
M 6 HOH A 42 442 109 HOH HOH . 
M 6 HOH A 43 443 149 HOH HOH . 
M 6 HOH A 44 444 43 HOH HOH . 
M 6 HOH A 45 445 27 HOH HOH . 
M 6 HOH A 46 446 150 HOH HOH . 
M 6 HOH A 47 447 90 HOH HOH . 
M 6 HOH A 48 448 47 HOH HOH . 
M 6 HOH A 49 449 107 HOH HOH . 
M 6 HOH A 50 450 199 HOH HOH . 
M 6 HOH A 51 451 153 HOH HOH . 
M 6 HOH A 52 452 85 HOH HOH . 
M 6 HOH A 53 453 156 HOH HOH . 
M 6 HOH A 54 454 95 HOH HOH . 
M 6 HOH A 55 455 116 HOH HOH . 
M 6 HOH A 56 456 223 HOH HOH . 
M 6 HOH A 57 457 220 HOH HOH . 
M 6 HOH A 58 458 45 HOH HOH . 
M 6 HOH A 59 459 98 HOH HOH . 
M 6 HOH A 60 460 204 HOH HOH . 
M 6 HOH A 61 461 188 HOH HOH . 
M 6 HOH A 62 462 79 HOH HOH . 
M 6 HOH A 63 463 241 HOH HOH . 
M 6 HOH A 64 464 210 HOH HOH . 
M 6 HOH A 65 465 215 HOH HOH . 
M 6 HOH A 66 466 163 HOH HOH . 
M 6 HOH A 67 467 214 HOH HOH . 
M 6 HOH A 68 468 245 HOH HOH . 
M 6 HOH A 69 469 89 HOH HOH . 
M 6 HOH A 70 470 123 HOH HOH . 
M 6 HOH A 71 471 134 HOH HOH . 
M 6 HOH A 72 472 239 HOH HOH . 
M 6 HOH A 73 473 172 HOH HOH . 
M 6 HOH A 74 474 182 HOH HOH . 
M 6 HOH A 75 475 234 HOH HOH . 
M 6 HOH A 76 476 230 HOH HOH . 
M 6 HOH A 77 477 203 HOH HOH . 
M 6 HOH A 78 478 173 HOH HOH . 
N 6 HOH B 1 401 94 HOH HOH . 
N 6 HOH B 2 402 184 HOH HOH . 
N 6 HOH B 3 403 16 HOH HOH . 
N 6 HOH B 4 404 64 HOH HOH . 
N 6 HOH B 5 405 51 HOH HOH . 
N 6 HOH B 6 406 174 HOH HOH . 
N 6 HOH B 7 407 35 HOH HOH . 
N 6 HOH B 8 408 86 HOH HOH . 
N 6 HOH B 9 409 165 HOH HOH . 
N 6 HOH B 10 410 83 HOH HOH . 
N 6 HOH B 11 411 25 HOH HOH . 
N 6 HOH B 12 412 1 HOH HOH . 
N 6 HOH B 13 413 229 HOH HOH . 
N 6 HOH B 14 414 243 HOH HOH . 
N 6 HOH B 15 415 18 HOH HOH . 
N 6 HOH B 16 416 58 HOH HOH . 
N 6 HOH B 17 417 158 HOH HOH . 
N 6 HOH B 18 418 21 HOH HOH . 
N 6 HOH B 19 419 186 HOH HOH . 
N 6 HOH B 20 420 34 HOH HOH . 
N 6 HOH B 21 421 3 HOH HOH . 
N 6 HOH B 22 422 138 HOH HOH . 
N 6 HOH B 23 423 46 HOH HOH . 
N 6 HOH B 24 424 175 HOH HOH . 
N 6 HOH B 25 425 4 HOH HOH . 
N 6 HOH B 26 426 62 HOH HOH . 
N 6 HOH B 27 427 183 HOH HOH . 
N 6 HOH B 28 428 192 HOH HOH . 
N 6 HOH B 29 429 75 HOH HOH . 
N 6 HOH B 30 430 53 HOH HOH . 
N 6 HOH B 31 431 8 HOH HOH . 
N 6 HOH B 32 432 42 HOH HOH . 
N 6 HOH B 33 433 142 HOH HOH . 
N 6 HOH B 34 434 52 HOH HOH . 
N 6 HOH B 35 435 155 HOH HOH . 
N 6 HOH B 36 436 88 HOH HOH . 
N 6 HOH B 37 437 59 HOH HOH . 
N 6 HOH B 38 438 32 HOH HOH . 
N 6 HOH B 39 439 144 HOH HOH . 
N 6 HOH B 40 440 110 HOH HOH . 
N 6 HOH B 41 441 29 HOH HOH . 
N 6 HOH B 42 442 161 HOH HOH . 
N 6 HOH B 43 443 19 HOH HOH . 
N 6 HOH B 44 444 170 HOH HOH . 
N 6 HOH B 45 445 103 HOH HOH . 
N 6 HOH B 46 446 15 HOH HOH . 
N 6 HOH B 47 447 242 HOH HOH . 
N 6 HOH B 48 448 11 HOH HOH . 
N 6 HOH B 49 449 60 HOH HOH . 
N 6 HOH B 50 450 71 HOH HOH . 
N 6 HOH B 51 451 197 HOH HOH . 
N 6 HOH B 52 452 55 HOH HOH . 
N 6 HOH B 53 453 139 HOH HOH . 
N 6 HOH B 54 454 82 HOH HOH . 
N 6 HOH B 55 455 191 HOH HOH . 
N 6 HOH B 56 456 7 HOH HOH . 
N 6 HOH B 57 457 41 HOH HOH . 
N 6 HOH B 58 458 2 HOH HOH . 
N 6 HOH B 59 459 133 HOH HOH . 
N 6 HOH B 60 460 143 HOH HOH . 
N 6 HOH B 61 461 154 HOH HOH . 
N 6 HOH B 62 462 73 HOH HOH . 
N 6 HOH B 63 463 208 HOH HOH . 
N 6 HOH B 64 464 226 HOH HOH . 
N 6 HOH B 65 465 66 HOH HOH . 
N 6 HOH B 66 466 205 HOH HOH . 
N 6 HOH B 67 467 120 HOH HOH . 
N 6 HOH B 68 468 9 HOH HOH . 
N 6 HOH B 69 469 147 HOH HOH . 
N 6 HOH B 70 470 30 HOH HOH . 
N 6 HOH B 71 471 181 HOH HOH . 
N 6 HOH B 72 472 92 HOH HOH . 
N 6 HOH B 73 473 22 HOH HOH . 
N 6 HOH B 74 474 61 HOH HOH . 
N 6 HOH B 75 475 177 HOH HOH . 
N 6 HOH B 76 476 222 HOH HOH . 
N 6 HOH B 77 477 185 HOH HOH . 
N 6 HOH B 78 478 76 HOH HOH . 
N 6 HOH B 79 479 128 HOH HOH . 
N 6 HOH B 80 480 151 HOH HOH . 
N 6 HOH B 81 481 44 HOH HOH . 
N 6 HOH B 82 482 31 HOH HOH . 
N 6 HOH B 83 483 77 HOH HOH . 
N 6 HOH B 84 484 20 HOH HOH . 
N 6 HOH B 85 485 212 HOH HOH . 
N 6 HOH B 86 486 169 HOH HOH . 
N 6 HOH B 87 487 10 HOH HOH . 
N 6 HOH B 88 488 235 HOH HOH . 
N 6 HOH B 89 489 97 HOH HOH . 
N 6 HOH B 90 490 122 HOH HOH . 
N 6 HOH B 91 491 227 HOH HOH . 
N 6 HOH B 92 492 78 HOH HOH . 
N 6 HOH B 93 493 68 HOH HOH . 
N 6 HOH B 94 494 193 HOH HOH . 
N 6 HOH B 95 495 57 HOH HOH . 
N 6 HOH B 96 496 108 HOH HOH . 
N 6 HOH B 97 497 189 HOH HOH . 
N 6 HOH B 98 498 93 HOH HOH . 
N 6 HOH B 99 499 33 HOH HOH . 
N 6 HOH B 100 500 23 HOH HOH . 
N 6 HOH B 101 501 74 HOH HOH . 
N 6 HOH B 102 502 63 HOH HOH . 
N 6 HOH B 103 503 218 HOH HOH . 
N 6 HOH B 104 504 166 HOH HOH . 
N 6 HOH B 105 505 196 HOH HOH . 
N 6 HOH B 106 506 209 HOH HOH . 
N 6 HOH B 107 507 84 HOH HOH . 
N 6 HOH B 108 508 157 HOH HOH . 
N 6 HOH B 109 509 233 HOH HOH . 
N 6 HOH B 110 510 219 HOH HOH . 
N 6 HOH B 111 511 198 HOH HOH . 
N 6 HOH B 112 512 115 HOH HOH . 
N 6 HOH B 113 513 162 HOH HOH . 
N 6 HOH B 114 514 216 HOH HOH . 
N 6 HOH B 115 515 201 HOH HOH . 
N 6 HOH B 116 516 195 HOH HOH . 
N 6 HOH B 117 517 231 HOH HOH . 
N 6 HOH B 118 518 131 HOH HOH . 
N 6 HOH B 119 519 228 HOH HOH . 
N 6 HOH B 120 520 67 HOH HOH . 
N 6 HOH B 121 521 40 HOH HOH . 
N 6 HOH B 122 522 129 HOH HOH . 
N 6 HOH B 123 523 206 HOH HOH . 
N 6 HOH B 124 524 176 HOH HOH . 
N 6 HOH B 125 525 105 HOH HOH . 
N 6 HOH B 126 526 217 HOH HOH . 
N 6 HOH B 127 527 168 HOH HOH . 
N 6 HOH B 128 528 238 HOH HOH . 
N 6 HOH B 129 529 99 HOH HOH . 
N 6 HOH B 130 530 213 HOH HOH . 
N 6 HOH B 131 531 111 HOH HOH . 
N 6 HOH B 132 532 202 HOH HOH . 
N 6 HOH B 133 533 126 HOH HOH . 
N 6 HOH B 134 534 104 HOH HOH . 
N 6 HOH B 135 535 127 HOH HOH . 
N 6 HOH B 136 536 87 HOH HOH . 
N 6 HOH B 137 537 179 HOH HOH . 
N 6 HOH B 138 538 13 HOH HOH . 
N 6 HOH B 139 539 137 HOH HOH . 
N 6 HOH B 140 540 102 HOH HOH . 
N 6 HOH B 141 541 101 HOH HOH . 
N 6 HOH B 142 542 221 HOH HOH . 
N 6 HOH B 143 543 113 HOH HOH . 
N 6 HOH B 144 544 152 HOH HOH . 
N 6 HOH B 145 545 200 HOH HOH . 
N 6 HOH B 146 546 106 HOH HOH . 
N 6 HOH B 147 547 171 HOH HOH . 
N 6 HOH B 148 548 117 HOH HOH . 
N 6 HOH B 149 549 232 HOH HOH . 
N 6 HOH B 150 550 121 HOH HOH . 
N 6 HOH B 151 551 100 HOH HOH . 
N 6 HOH B 152 552 190 HOH HOH . 
N 6 HOH B 153 553 132 HOH HOH . 
N 6 HOH B 154 554 118 HOH HOH . 
N 6 HOH B 155 555 207 HOH HOH . 
N 6 HOH B 156 556 119 HOH HOH . 
N 6 HOH B 157 557 224 HOH HOH . 
O 6 HOH D 1 101 237 HOH HOH . 
O 6 HOH D 2 102 140 HOH HOH . 
P 6 HOH E 1 201 236 HOH HOH . 
P 6 HOH E 2 202 246 HOH HOH . 
P 6 HOH E 3 203 38 HOH HOH . 
P 6 HOH E 4 204 69 HOH HOH . 
P 6 HOH E 5 205 26 HOH HOH . 
P 6 HOH E 6 206 50 HOH HOH . 
P 6 HOH E 7 207 180 HOH HOH . 
P 6 HOH E 8 208 130 HOH HOH . 
P 6 HOH E 9 209 91 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 4 -22.021 -26.375 -5.287 1 35.55 ? C1 GOL 302 B 1 
HETATM 2 O O1 GOL . . . I 4 -23.073 -27.271 -5.276 1 33.58 ? O1 GOL 302 B 1 
HETATM 3 C C2 GOL . . . I 4 -20.8 -27.106 -5.884 1 38.65 ? C2 GOL 302 B 1 
HETATM 4 O O2 GOL . . . I 4 -20.309 -28.094 -5.048 1 37.6 ? O2 GOL 302 B 1 
HETATM 5 C C3 GOL . . . I 4 -19.765 -26.008 -6.082 1 41.86 ? C3 GOL 302 B 1 
HETATM 6 O O3 GOL . . . I 4 -18.553 -26.573 -5.698 1 44.8 ? O3 GOL 302 B 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#