data_6KDT # _model_server_result.job_id 1Ww3KX1cZliJsB8w3N6BKg _model_server_result.datetime_utc '2024-11-25 21:43:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":902}' # _entry.id 6KDT # _exptl.entry_id 6KDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KDT _cell.length_a 60.35 _cell.length_b 240.784 _cell.length_c 232.131 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,B,E,F,I,J 2 1 C,D,G,H,K,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 6KDT _atom_sites.fract_transf_matrix[1][1] 0.01657 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SAH A 1 901 900 SAH SAH . F 4 FMT A 1 902 2 FMT FMT . G 3 SAH D 1 901 900 SAH SAH . H 4 FMT D 1 902 1 FMT FMT . I 5 HOH A 1 1001 182 HOH HOH . I 5 HOH A 2 1002 171 HOH HOH . I 5 HOH A 3 1003 162 HOH HOH . I 5 HOH A 4 1004 54 HOH HOH . I 5 HOH A 5 1005 38 HOH HOH . I 5 HOH A 6 1006 59 HOH HOH . I 5 HOH A 7 1007 51 HOH HOH . I 5 HOH A 8 1008 56 HOH HOH . I 5 HOH A 9 1009 5 HOH HOH . I 5 HOH A 10 1010 55 HOH HOH . I 5 HOH A 11 1011 42 HOH HOH . I 5 HOH A 12 1012 163 HOH HOH . I 5 HOH A 13 1013 12 HOH HOH . I 5 HOH A 14 1014 32 HOH HOH . I 5 HOH A 15 1015 52 HOH HOH . I 5 HOH A 16 1016 36 HOH HOH . I 5 HOH A 17 1017 166 HOH HOH . I 5 HOH A 18 1018 49 HOH HOH . I 5 HOH A 19 1019 16 HOH HOH . I 5 HOH A 20 1020 22 HOH HOH . I 5 HOH A 21 1021 27 HOH HOH . I 5 HOH A 22 1022 159 HOH HOH . I 5 HOH A 23 1023 14 HOH HOH . I 5 HOH A 24 1024 19 HOH HOH . I 5 HOH A 25 1025 21 HOH HOH . I 5 HOH A 26 1026 44 HOH HOH . I 5 HOH A 27 1027 174 HOH HOH . I 5 HOH A 28 1028 58 HOH HOH . I 5 HOH A 29 1029 170 HOH HOH . I 5 HOH A 30 1030 4 HOH HOH . I 5 HOH A 31 1031 13 HOH HOH . I 5 HOH A 32 1032 48 HOH HOH . I 5 HOH A 33 1033 155 HOH HOH . I 5 HOH A 34 1034 7 HOH HOH . I 5 HOH A 35 1035 172 HOH HOH . I 5 HOH A 36 1036 18 HOH HOH . I 5 HOH A 37 1037 41 HOH HOH . I 5 HOH A 38 1038 50 HOH HOH . I 5 HOH A 39 1039 140 HOH HOH . I 5 HOH A 40 1040 153 HOH HOH . I 5 HOH A 41 1041 31 HOH HOH . I 5 HOH A 42 1042 43 HOH HOH . I 5 HOH A 43 1043 157 HOH HOH . I 5 HOH A 44 1044 158 HOH HOH . I 5 HOH A 45 1045 20 HOH HOH . I 5 HOH A 46 1046 17 HOH HOH . I 5 HOH A 47 1047 57 HOH HOH . I 5 HOH A 48 1048 180 HOH HOH . I 5 HOH A 49 1049 185 HOH HOH . I 5 HOH A 50 1050 45 HOH HOH . I 5 HOH A 51 1051 23 HOH HOH . I 5 HOH A 52 1052 11 HOH HOH . I 5 HOH A 53 1053 8 HOH HOH . I 5 HOH A 54 1054 154 HOH HOH . I 5 HOH A 55 1055 142 HOH HOH . I 5 HOH A 56 1056 26 HOH HOH . J 5 HOH B 1 401 169 HOH HOH . J 5 HOH B 2 402 66 HOH HOH . J 5 HOH B 3 403 186 HOH HOH . J 5 HOH B 4 404 10 HOH HOH . J 5 HOH B 5 405 173 HOH HOH . J 5 HOH B 6 406 161 HOH HOH . J 5 HOH B 7 407 160 HOH HOH . J 5 HOH B 8 408 60 HOH HOH . J 5 HOH B 9 409 3 HOH HOH . J 5 HOH B 10 410 63 HOH HOH . J 5 HOH B 11 411 175 HOH HOH . J 5 HOH B 12 412 65 HOH HOH . J 5 HOH B 13 413 64 HOH HOH . J 5 HOH B 14 414 46 HOH HOH . J 5 HOH B 15 415 61 HOH HOH . K 5 HOH C 1 401 183 HOH HOH . K 5 HOH C 2 402 78 HOH HOH . K 5 HOH C 3 403 188 HOH HOH . K 5 HOH C 4 404 92 HOH HOH . K 5 HOH C 5 405 90 HOH HOH . K 5 HOH C 6 406 81 HOH HOH . K 5 HOH C 7 407 80 HOH HOH . K 5 HOH C 8 408 71 HOH HOH . K 5 HOH C 9 409 76 HOH HOH . K 5 HOH C 10 410 84 HOH HOH . K 5 HOH C 11 411 77 HOH HOH . K 5 HOH C 12 412 67 HOH HOH . K 5 HOH C 13 413 150 HOH HOH . K 5 HOH C 14 414 94 HOH HOH . K 5 HOH C 15 415 86 HOH HOH . K 5 HOH C 16 416 89 HOH HOH . K 5 HOH C 17 417 144 HOH HOH . K 5 HOH C 18 418 87 HOH HOH . K 5 HOH C 19 419 88 HOH HOH . K 5 HOH C 20 420 85 HOH HOH . K 5 HOH C 21 421 143 HOH HOH . K 5 HOH C 22 422 95 HOH HOH . K 5 HOH C 23 423 93 HOH HOH . K 5 HOH C 24 424 176 HOH HOH . K 5 HOH C 25 425 151 HOH HOH . K 5 HOH C 26 426 15 HOH HOH . K 5 HOH C 27 427 69 HOH HOH . K 5 HOH C 28 428 152 HOH HOH . L 5 HOH D 1 1001 168 HOH HOH . L 5 HOH D 2 1002 134 HOH HOH . L 5 HOH D 3 1003 189 HOH HOH . L 5 HOH D 4 1004 102 HOH HOH . L 5 HOH D 5 1005 116 HOH HOH . L 5 HOH D 6 1006 133 HOH HOH . L 5 HOH D 7 1007 124 HOH HOH . L 5 HOH D 8 1008 30 HOH HOH . L 5 HOH D 9 1009 177 HOH HOH . L 5 HOH D 10 1010 117 HOH HOH . L 5 HOH D 11 1011 104 HOH HOH . L 5 HOH D 12 1012 119 HOH HOH . L 5 HOH D 13 1013 120 HOH HOH . L 5 HOH D 14 1014 167 HOH HOH . L 5 HOH D 15 1015 139 HOH HOH . L 5 HOH D 16 1016 191 HOH HOH . L 5 HOH D 17 1017 178 HOH HOH . L 5 HOH D 18 1018 105 HOH HOH . L 5 HOH D 19 1019 131 HOH HOH . L 5 HOH D 20 1020 29 HOH HOH . L 5 HOH D 21 1021 97 HOH HOH . L 5 HOH D 22 1022 98 HOH HOH . L 5 HOH D 23 1023 128 HOH HOH . L 5 HOH D 24 1024 72 HOH HOH . L 5 HOH D 25 1025 127 HOH HOH . L 5 HOH D 26 1026 99 HOH HOH . L 5 HOH D 27 1027 107 HOH HOH . L 5 HOH D 28 1028 35 HOH HOH . L 5 HOH D 29 1029 114 HOH HOH . L 5 HOH D 30 1030 121 HOH HOH . L 5 HOH D 31 1031 179 HOH HOH . L 5 HOH D 32 1032 130 HOH HOH . L 5 HOH D 33 1033 28 HOH HOH . L 5 HOH D 34 1034 106 HOH HOH . L 5 HOH D 35 1035 83 HOH HOH . L 5 HOH D 36 1036 145 HOH HOH . L 5 HOH D 37 1037 184 HOH HOH . L 5 HOH D 38 1038 34 HOH HOH . L 5 HOH D 39 1039 123 HOH HOH . L 5 HOH D 40 1040 146 HOH HOH . L 5 HOH D 41 1041 122 HOH HOH . L 5 HOH D 42 1042 190 HOH HOH . L 5 HOH D 43 1043 129 HOH HOH . L 5 HOH D 44 1044 118 HOH HOH . L 5 HOH D 45 1045 115 HOH HOH . L 5 HOH D 46 1046 109 HOH HOH . L 5 HOH D 47 1047 147 HOH HOH . L 5 HOH D 48 1048 110 HOH HOH . L 5 HOH D 49 1049 148 HOH HOH . L 5 HOH D 50 1050 187 HOH HOH . L 5 HOH D 51 1051 74 HOH HOH . L 5 HOH D 52 1052 75 HOH HOH . L 5 HOH D 53 1053 156 HOH HOH . L 5 HOH D 54 1054 149 HOH HOH . L 5 HOH D 55 1055 100 HOH HOH . L 5 HOH D 56 1056 136 HOH HOH . L 5 HOH D 57 1057 112 HOH HOH . L 5 HOH D 58 1058 135 HOH HOH . L 5 HOH D 59 1059 25 HOH HOH . L 5 HOH D 60 1060 113 HOH HOH . L 5 HOH D 61 1061 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . F 4 -8.878 34.141 -13.407 1 57.51 ? C FMT 902 A 1 HETATM 2 O O1 FMT . . . F 4 -7.659 33.935 -13.329 1 55.72 ? O1 FMT 902 A 1 HETATM 3 O O2 FMT . . . F 4 -9.484 34.493 -14.434 1 55.76 ? O2 FMT 902 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 3 #