data_6KDX # _model_server_result.job_id N0E9w9cWEoV65KhCa9uS1A _model_server_result.datetime_utc '2024-10-26 02:32:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kdx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":803}' # _entry.id 6KDX # _exptl.entry_id 6KDX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 318.376 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(5,7-dimethyl-[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)ethyl]quinolin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KDX _cell.length_a 50.417 _cell.length_b 81.44 _cell.length_c 159.976 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KDX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 85 A HIS 529 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc2 A NE2 HIS 119 A HIS 563 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc3 A OD2 ASP 120 A ASP 564 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc4 A OD1 ASP 120 A ASP 564 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc5 A OD1 ASP 230 A ASP 674 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc6 C ZN ZN . A ZN 801 1_555 H O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc7 D MG MG . A MG 802 1_555 H O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc8 D MG MG . A MG 802 1_555 H O HOH . A HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc9 D MG MG . A MG 802 1_555 H O HOH . A HOH 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc10 D MG MG . A MG 802 1_555 H O HOH . A HOH 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc11 B NE2 HIS 85 B HIS 529 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc12 B NE2 HIS 119 B HIS 563 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc13 B OD2 ASP 120 B ASP 564 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc14 B OD1 ASP 120 B ASP 564 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc15 B OD1 ASP 230 B ASP 674 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc16 F ZN ZN . B ZN 801 1_555 I O HOH . B HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc17 F ZN ZN . B ZN 801 1_555 I O HOH . B HOH 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc18 G MG MG . B MG 802 1_555 I O HOH . B HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc19 G MG MG . B MG 802 1_555 I O HOH . B HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc20 G MG MG . B MG 802 1_555 I O HOH . B HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc21 G MG MG . B MG 802 1_555 I O HOH . B HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc22 G MG MG . B MG 802 1_555 I O HOH . B HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? # _chem_comp.formula 'C18 H18 N6' _chem_comp.formula_weight 318.376 _chem_comp.id D6X _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(5,7-dimethyl-[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)ethyl]quinolin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C22 D6X doub 83 n y C21 C20 D6X sing 84 n y C17 C20 D6X doub 85 n y C17 C16 D6X sing 86 n y C22 C23 D6X sing 87 n y C20 C19 D6X sing 88 n y C16 C15 D6X doub 89 n y C23 C24 D6X doub 90 n y C19 C24 D6X sing 91 n y C19 N18 D6X doub 92 n y C15 N18 D6X sing 93 n y C15 N12 D6X sing 94 n n N12 C11 D6X sing 95 n n C10 C11 D6X sing 96 n n C10 C8 D6X sing 97 n n C8 N9 D6X doub 98 n y C8 N7 D6X sing 99 n y N9 N5 D6X sing 100 n y C13 C1 D6X sing 101 n n N7 C6 D6X doub 102 n y N5 C1 D6X sing 103 n y N5 C6 D6X sing 104 n y C1 C2 D6X doub 105 n y C6 N4 D6X sing 106 n y C2 C3 D6X sing 107 n y N4 C3 D6X doub 108 n y C3 C14 D6X sing 109 n n C22 H1 D6X sing 110 n n C23 H2 D6X sing 111 n n C21 H3 D6X sing 112 n n C17 H4 D6X sing 113 n n C24 H5 D6X sing 114 n n C16 H6 D6X sing 115 n n C2 H7 D6X sing 116 n n C13 H8 D6X sing 117 n n C13 H9 D6X sing 118 n n C13 H10 D6X sing 119 n n C14 H11 D6X sing 120 n n C14 H12 D6X sing 121 n n C14 H13 D6X sing 122 n n C10 H14 D6X sing 123 n n C10 H15 D6X sing 124 n n C11 H16 D6X sing 125 n n C11 H17 D6X sing 126 n n N12 H18 D6X sing 127 n n # _atom_sites.entry_id 6KDX _atom_sites.fract_transf_matrix[1][1] 0.019835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012279 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 801 801 ZN ZN . D 3 MG A 1 802 802 MG MG . E 4 D6X A 1 803 1 D6X UNL . F 2 ZN B 1 801 801 ZN ZN . G 3 MG B 1 802 802 MG MG . H 5 HOH A 1 901 224 HOH HOH . H 5 HOH A 2 902 226 HOH HOH . H 5 HOH A 3 903 202 HOH HOH . H 5 HOH A 4 904 23 HOH HOH . H 5 HOH A 5 905 155 HOH HOH . H 5 HOH A 6 906 45 HOH HOH . H 5 HOH A 7 907 73 HOH HOH . H 5 HOH A 8 908 140 HOH HOH . H 5 HOH A 9 909 222 HOH HOH . H 5 HOH A 10 910 66 HOH HOH . H 5 HOH A 11 911 225 HOH HOH . I 5 HOH B 1 901 164 HOH HOH . I 5 HOH B 2 902 139 HOH HOH . I 5 HOH B 3 903 143 HOH HOH . I 5 HOH B 4 904 223 HOH HOH . I 5 HOH B 5 905 75 HOH HOH . I 5 HOH B 6 906 60 HOH HOH . I 5 HOH B 7 907 175 HOH HOH . I 5 HOH B 8 908 20 HOH HOH . I 5 HOH B 9 909 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C22 D6X . . . E 4 26.438 4.887 54.71 1 35.53 ? C22 D6X 803 A 1 HETATM 2 C C23 D6X . . . E 4 26.462 4.356 55.99 1 35.75 ? C23 D6X 803 A 1 HETATM 3 C C21 D6X . . . E 4 25.251 5.349 54.177 1 38.17 ? C21 D6X 803 A 1 HETATM 4 C C17 D6X . . . E 4 22.896 5.751 54.365 1 36.95 ? C17 D6X 803 A 1 HETATM 5 C C24 D6X . . . E 4 25.291 4.304 56.73 1 41.41 ? C24 D6X 803 A 1 HETATM 6 C C16 D6X . . . E 4 21.739 5.689 55.111 1 36.46 ? C16 D6X 803 A 1 HETATM 7 C C20 D6X . . . E 4 24.077 5.291 54.93 1 37.9 ? C20 D6X 803 A 1 HETATM 8 C C19 D6X . . . E 4 24.079 4.772 56.221 1 37.43 ? C19 D6X 803 A 1 HETATM 9 C C15 D6X . . . E 4 21.816 5.151 56.385 1 38.45 ? C15 D6X 803 A 1 HETATM 10 C C8 D6X . . . E 4 18.696 3.311 59.471 1 41.03 ? C8 D6X 803 A 1 HETATM 11 C C6 D6X . . . E 4 18.434 2.958 61.513 1 38.02 ? C6 D6X 803 A 1 HETATM 12 C C2 D6X . . . E 4 16.315 1.579 62.721 1 37.14 ? C2 D6X 803 A 1 HETATM 13 C C1 D6X . . . E 4 16.362 1.735 61.4 1 38.59 ? C1 D6X 803 A 1 HETATM 14 C C3 D6X . . . E 4 17.465 2.197 63.403 1 38.99 ? C3 D6X 803 A 1 HETATM 15 C C13 D6X . . . E 4 15.304 1.197 60.486 1 35.47 ? C13 D6X 803 A 1 HETATM 16 C C14 D6X . . . E 4 17.498 2.06 64.876 1 38.34 ? C14 D6X 803 A 1 HETATM 17 C C10 D6X . . . E 4 19.209 3.753 58.184 1 38.04 ? C10 D6X 803 A 1 HETATM 18 C C11 D6X . . . E 4 20.603 4.295 58.22 1 38.61 ? C11 D6X 803 A 1 HETATM 19 N N18 D6X . . . E 4 22.958 4.69 56.955 1 37.64 ? N18 D6X 803 A 1 HETATM 20 N N7 D6X . . . E 4 19.276 3.558 60.695 1 36.75 ? N7 D6X 803 A 1 HETATM 21 N N9 D6X . . . E 4 17.566 2.61 59.487 1 39.56 ? N9 D6X 803 A 1 HETATM 22 N N4 D6X . . . E 4 18.458 2.845 62.87 1 43.29 ? N4 D6X 803 A 1 HETATM 23 N N5 D6X . . . E 4 17.411 2.389 60.81 1 37.26 ? N5 D6X 803 A 1 HETATM 24 N N12 D6X . . . E 4 20.595 5.134 57.05 1 36.6 ? N12 D6X 803 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #