data_6KDY # _model_server_result.job_id RCeAHWSAs28Bo5358-dvaQ _model_server_result.datetime_utc '2024-12-21 12:23:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kdy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 6KDY # _exptl.entry_id 6KDY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.31 _cell.angle_gamma 90 _cell.entry_id 6KDY _cell.length_a 99.46 _cell.length_b 162.979 _cell.length_c 114.407 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KDY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J 1 1 C,D,K,L,M 2 1 E,F,N,O 3 1 G,H,P,Q 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 M N N # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 470 n n O1 HO1 PG4 sing 471 n n C1 C2 PG4 sing 472 n n C1 H11 PG4 sing 473 n n C1 H12 PG4 sing 474 n n C2 O2 PG4 sing 475 n n C2 H21 PG4 sing 476 n n C2 H22 PG4 sing 477 n n O2 C3 PG4 sing 478 n n C3 C4 PG4 sing 479 n n C3 H31 PG4 sing 480 n n C3 H32 PG4 sing 481 n n C4 O3 PG4 sing 482 n n C4 H41 PG4 sing 483 n n C4 H42 PG4 sing 484 n n O3 C5 PG4 sing 485 n n C5 C6 PG4 sing 486 n n C5 H51 PG4 sing 487 n n C5 H52 PG4 sing 488 n n C6 O4 PG4 sing 489 n n C6 H61 PG4 sing 490 n n C6 H62 PG4 sing 491 n n O4 C7 PG4 sing 492 n n C7 C8 PG4 sing 493 n n C7 H71 PG4 sing 494 n n C7 H72 PG4 sing 495 n n C8 O5 PG4 sing 496 n n C8 H81 PG4 sing 497 n n C8 H82 PG4 sing 498 n n O5 HO5 PG4 sing 499 n n # _atom_sites.entry_id 6KDY _atom_sites.fract_transf_matrix[1][1] 0.010054 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001828 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008884 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 NAD A 1 401 3 NAD NAD . J 4 PG4 B 1 401 2 PG4 PG4 . K 3 NAD C 1 401 2 NAD NAD . L 5 2PE D 1 401 1 2PE 2PE . M 4 PG4 D 1 402 1 PG4 PG4 . N 3 NAD E 1 401 1 NAD NAD . O 6 PE7 F 1 401 1 PE7 PE7 . P 3 NAD G 1 401 4 NAD NAD . Q 7 P6G H 1 401 1 P6G P6G . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . J 4 13.377 0.505 27.336 1 58.98 ? O1 PG4 401 B 1 HETATM 2 C C1 PG4 . . . J 4 13.759 1.798 26.953 1 68.74 ? C1 PG4 401 B 1 HETATM 3 C C2 PG4 . . . J 4 12.609 2.753 27.327 1 82.46 ? C2 PG4 401 B 1 HETATM 4 O O2 PG4 . . . J 4 12.799 4.126 27.02 1 78.99 ? O2 PG4 401 B 1 HETATM 5 C C3 PG4 . . . J 4 11.7 4.985 27.272 1 63.46 ? C3 PG4 401 B 1 HETATM 6 C C4 PG4 . . . J 4 10.633 4.818 26.186 1 65.86 ? C4 PG4 401 B 1 HETATM 7 O O3 PG4 . . . J 4 11.262 4.907 24.928 1 78.61 ? O3 PG4 401 B 1 HETATM 8 C C5 PG4 . . . J 4 11.212 3.73 24.153 1 80.5 ? C5 PG4 401 B 1 HETATM 9 C C6 PG4 . . . J 4 12.097 3.774 22.898 1 71.51 ? C6 PG4 401 B 1 HETATM 10 O O4 PG4 . . . J 4 11.646 4.805 22.06 1 76.46 ? O4 PG4 401 B 1 HETATM 11 C C7 PG4 . . . J 4 11.789 4.583 20.683 1 71.81 ? C7 PG4 401 B 1 HETATM 12 C C8 PG4 . . . J 4 11.269 5.771 19.869 1 66.69 ? C8 PG4 401 B 1 HETATM 13 O O5 PG4 . . . J 4 10.144 6.331 20.485 1 71.2 ? O5 PG4 401 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #