data_6KDY
#
_model_server_result.job_id            ovNoLCzGv6gWcSdfsAkNUA 
_model_server_result.datetime_utc      '2024-12-21 12:17:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kdy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":401}' 
#
_entry.id    6KDY 
#
_exptl.entry_id    6KDY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              414.488 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NONAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.31 
_cell.angle_gamma         90 
_cell.entry_id            6KDY 
_cell.length_a            99.46 
_cell.length_b            162.979 
_cell.length_c            114.407 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KDY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J 1 1 
C,D,K,L,M 2 1 
E,F,N,O 3 1 
G,H,P,Q 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C18 H38 O10' 
_chem_comp.formula_weight    414.488 
_chem_comp.id                2PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NONAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 2PE sing 1 n n 
O1 HO1 2PE sing 2 n n 
C2 C3 2PE sing 3 n n 
C2 H21 2PE sing 4 n n 
C2 H22 2PE sing 5 n n 
C3 O4 2PE sing 6 n n 
C3 H31 2PE sing 7 n n 
C3 H32 2PE sing 8 n n 
O4 C5 2PE sing 9 n n 
C5 C6 2PE sing 10 n n 
C5 H51 2PE sing 11 n n 
C5 H52 2PE sing 12 n n 
C6 O7 2PE sing 13 n n 
C6 H61 2PE sing 14 n n 
C6 H62 2PE sing 15 n n 
O7 C8 2PE sing 16 n n 
C8 C9 2PE sing 17 n n 
C8 H81 2PE sing 18 n n 
C8 H82 2PE sing 19 n n 
C9 O10 2PE sing 20 n n 
C9 H91 2PE sing 21 n n 
C9 H92 2PE sing 22 n n 
O10 C11 2PE sing 23 n n 
C11 C12 2PE sing 24 n n 
C11 H111 2PE sing 25 n n 
C11 H112 2PE sing 26 n n 
C12 O13 2PE sing 27 n n 
C12 H121 2PE sing 28 n n 
C12 H122 2PE sing 29 n n 
O13 C14 2PE sing 30 n n 
C14 C15 2PE sing 31 n n 
C14 H141 2PE sing 32 n n 
C14 H142 2PE sing 33 n n 
C15 O16 2PE sing 34 n n 
C15 H151 2PE sing 35 n n 
C15 H152 2PE sing 36 n n 
O16 C17 2PE sing 37 n n 
C17 C18 2PE sing 38 n n 
C17 H171 2PE sing 39 n n 
C17 H172 2PE sing 40 n n 
C18 O19 2PE sing 41 n n 
C18 H181 2PE sing 42 n n 
C18 H182 2PE sing 43 n n 
O19 C20 2PE sing 44 n n 
C20 C21 2PE sing 45 n n 
C20 H201 2PE sing 46 n n 
C20 H202 2PE sing 47 n n 
C21 O22 2PE sing 48 n n 
C21 H211 2PE sing 49 n n 
C21 H212 2PE sing 50 n n 
O22 C23 2PE sing 51 n n 
C23 C24 2PE sing 52 n n 
C23 H231 2PE sing 53 n n 
C23 H232 2PE sing 54 n n 
C24 O25 2PE sing 55 n n 
C24 H241 2PE sing 56 n n 
C24 H242 2PE sing 57 n n 
O25 C26 2PE sing 58 n n 
C26 C27 2PE sing 59 n n 
C26 H261 2PE sing 60 n n 
C26 H262 2PE sing 61 n n 
C27 O28 2PE sing 62 n n 
C27 H271 2PE sing 63 n n 
C27 H272 2PE sing 64 n n 
O28 HO2 2PE sing 65 n n 
#
_atom_sites.entry_id                     6KDY 
_atom_sites.fract_transf_matrix[1][1]    0.010054 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001828 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006136 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008884 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 NAD A 1 401 3 NAD NAD . 
J 4 PG4 B 1 401 2 PG4 PG4 . 
K 3 NAD C 1 401 2 NAD NAD . 
L 5 2PE D 1 401 1 2PE 2PE . 
M 4 PG4 D 1 402 1 PG4 PG4 . 
N 3 NAD E 1 401 1 NAD NAD . 
O 6 PE7 F 1 401 1 PE7 PE7 . 
P 3 NAD G 1 401 4 NAD NAD . 
Q 7 P6G H 1 401 1 P6G P6G . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 2PE . . . L 5 62.467 -5.447 80.465 1 71.03 ? O1 2PE 401 D 1 
HETATM 2 C C2 2PE . . . L 5 63.018 -5.034 79.246 1 77.81 ? C2 2PE 401 D 1 
HETATM 3 C C3 2PE . . . L 5 61.887 -4.77 78.249 1 83.19 ? C3 2PE 401 D 1 
HETATM 4 O O4 2PE . . . L 5 62.369 -4.377 76.984 1 86.72 ? O4 2PE 401 D 1 
HETATM 5 C C5 2PE . . . L 5 61.313 -4.056 76.115 1 79.79 ? C5 2PE 401 D 1 
HETATM 6 C C6 2PE . . . L 5 61.708 -3.074 75.01 1 73.39 ? C6 2PE 401 D 1 
HETATM 7 O O7 2PE . . . L 5 61.144 -3.529 73.802 1 84.16 ? O7 2PE 401 D 1 
HETATM 8 C C8 2PE . . . L 5 61.81 -3.166 72.606 1 85.6 ? C8 2PE 401 D 1 
HETATM 9 C C9 2PE . . . L 5 63.34 -3.353 72.66 1 80.13 ? C9 2PE 401 D 1 
HETATM 10 O O10 2PE . . . L 5 64.067 -2.235 72.205 1 75.37 ? O10 2PE 401 D 1 
HETATM 11 C C11 2PE . . . L 5 65.347 -2.159 72.775 1 76.43 ? C11 2PE 401 D 1 
HETATM 12 C C12 2PE . . . L 5 66.157 -3.383 72.348 1 83.03 ? C12 2PE 401 D 1 
HETATM 13 O O13 2PE . . . L 5 66.417 -3.305 70.966 1 83.58 ? O13 2PE 401 D 1 
HETATM 14 C C14 2PE . . . L 5 65.659 -4.184 70.167 1 83.11 ? C14 2PE 401 D 1 
HETATM 15 C C15 2PE . . . L 5 65.825 -5.638 70.645 1 84.07 ? C15 2PE 401 D 1 
HETATM 16 O O16 2PE . . . L 5 65.162 -6.553 69.802 1 77.57 ? O16 2PE 401 D 1 
HETATM 17 C C17 2PE . . . L 5 65.629 -6.563 68.474 1 74.64 ? C17 2PE 401 D 1 
HETATM 18 C C18 2PE . . . L 5 64.585 -7.222 67.579 1 77.45 ? C18 2PE 401 D 1 
HETATM 19 O O19 2PE . . . L 5 63.374 -7.285 68.281 1 82.42 ? O19 2PE 401 D 1 
HETATM 20 C C20 2PE . . . L 5 62.47 -6.337 67.795 1 82.97 ? C20 2PE 401 D 1 
HETATM 21 C C21 2PE . . . L 5 62.181 -5.285 68.87 1 82.53 ? C21 2PE 401 D 1 
HETATM 22 O O22 2PE . . . L 5 60.805 -5.058 68.971 1 75.74 ? O22 2PE 401 D 1 
HETATM 23 C C23 2PE . . . L 5 60.176 -6.05 69.718 1 70.08 ? C23 2PE 401 D 1 
HETATM 24 C C24 2PE . . . L 5 59.488 -7.098 68.856 1 62.66 ? C24 2PE 401 D 1 
HETATM 25 O O25 2PE . . . L 5 58.206 -6.59 68.66 1 67.29 ? O25 2PE 401 D 1 
HETATM 26 C C26 2PE . . . L 5 57.116 -7.46 68.716 1 60.65 ? C26 2PE 401 D 1 
HETATM 27 C C27 2PE . . . L 5 57.118 -8.284 67.44 1 72.35 ? C27 2PE 401 D 1 
HETATM 28 O O28 2PE . . . L 5 58.059 -9.303 67.605 1 71.4 ? O28 2PE 401 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           28 
#