data_6KDY
#
_model_server_result.job_id            FmrH02fqfimf-Bsixl5oqg 
_model_server_result.datetime_utc      '2024-12-21 11:36:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kdy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":401}' 
#
_entry.id    6KDY 
#
_exptl.entry_id    6KDY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.331 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEXAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.31 
_cell.angle_gamma         90 
_cell.entry_id            6KDY 
_cell.length_a            99.46 
_cell.length_b            162.979 
_cell.length_c            114.407 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KDY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J 1 1 
C,D,K,L,M 2 1 
E,F,N,O 3 1 
G,H,P,Q 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             Q 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H26 O7' 
_chem_comp.formula_weight    282.331 
_chem_comp.id                P6G 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEXAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'POLYETHYLENE GLYCOL PEG400' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 P6G sing 375 n n 
O1 H1 P6G sing 376 n n 
C2 C3 P6G sing 377 n n 
C2 H21 P6G sing 378 n n 
C2 H22 P6G sing 379 n n 
C3 O4 P6G sing 380 n n 
C3 H31 P6G sing 381 n n 
C3 H32 P6G sing 382 n n 
O4 C5 P6G sing 383 n n 
C5 C6 P6G sing 384 n n 
C5 H51 P6G sing 385 n n 
C5 H52 P6G sing 386 n n 
C6 O7 P6G sing 387 n n 
C6 H61 P6G sing 388 n n 
C6 H62 P6G sing 389 n n 
O7 C8 P6G sing 390 n n 
C8 C9 P6G sing 391 n n 
C8 H81 P6G sing 392 n n 
C8 H82 P6G sing 393 n n 
C9 O10 P6G sing 394 n n 
C9 H91 P6G sing 395 n n 
C9 H92 P6G sing 396 n n 
O10 C11 P6G sing 397 n n 
C11 C12 P6G sing 398 n n 
C11 H111 P6G sing 399 n n 
C11 H112 P6G sing 400 n n 
C12 O13 P6G sing 401 n n 
C12 H121 P6G sing 402 n n 
C12 H122 P6G sing 403 n n 
O13 C14 P6G sing 404 n n 
C14 C15 P6G sing 405 n n 
C14 H141 P6G sing 406 n n 
C14 H142 P6G sing 407 n n 
C15 O16 P6G sing 408 n n 
C15 H151 P6G sing 409 n n 
C15 H152 P6G sing 410 n n 
O16 C17 P6G sing 411 n n 
C17 C18 P6G sing 412 n n 
C17 H171 P6G sing 413 n n 
C17 H172 P6G sing 414 n n 
C18 O19 P6G sing 415 n n 
C18 H181 P6G sing 416 n n 
C18 H182 P6G sing 417 n n 
O19 H19 P6G sing 418 n n 
#
_atom_sites.entry_id                     6KDY 
_atom_sites.fract_transf_matrix[1][1]    0.010054 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001828 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006136 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008884 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 NAD A 1 401 3 NAD NAD . 
J 4 PG4 B 1 401 2 PG4 PG4 . 
K 3 NAD C 1 401 2 NAD NAD . 
L 5 2PE D 1 401 1 2PE 2PE . 
M 4 PG4 D 1 402 1 PG4 PG4 . 
N 3 NAD E 1 401 1 NAD NAD . 
O 6 PE7 F 1 401 1 PE7 PE7 . 
P 3 NAD G 1 401 4 NAD NAD . 
Q 7 P6G H 1 401 1 P6G P6G . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 P6G . . . Q 7 37.55 -47.26 -9.897 1 75.52 ? O1 P6G 401 H 1 
HETATM 2 C C2 P6G . . . Q 7 38.514 -48.125 -9.391 1 70.09 ? C2 P6G 401 H 1 
HETATM 3 C C3 P6G . . . Q 7 39.655 -48.103 -10.389 1 76.81 ? C3 P6G 401 H 1 
HETATM 4 O O4 P6G . . . Q 7 40.843 -47.728 -9.757 1 81.3 ? O4 P6G 401 H 1 
HETATM 5 C C5 P6G . . . Q 7 42.011 -48.101 -10.448 1 76.72 ? C5 P6G 401 H 1 
HETATM 6 C C6 P6G . . . Q 7 42.228 -49.613 -10.318 1 84.89 ? C6 P6G 401 H 1 
HETATM 7 O O7 P6G . . . Q 7 41.756 -50.11 -9.082 1 90.56 ? O7 P6G 401 H 1 
HETATM 8 C C8 P6G . . . Q 7 41.371 -51.467 -9.101 1 85.31 ? C8 P6G 401 H 1 
HETATM 9 C C9 P6G . . . Q 7 41.976 -52.27 -7.938 1 81.49 ? C9 P6G 401 H 1 
HETATM 10 O O10 P6G . . . Q 7 43.32 -51.915 -7.746 1 89 ? O10 P6G 401 H 1 
HETATM 11 C C11 P6G . . . Q 7 43.613 -51.16 -6.594 1 87.02 ? C11 P6G 401 H 1 
HETATM 12 C C12 P6G . . . Q 7 45.031 -51.489 -6.089 1 91.26 ? C12 P6G 401 H 1 
HETATM 13 O O13 P6G . . . Q 7 46.005 -51.47 -7.112 1 91.15 ? O13 P6G 401 H 1 
HETATM 14 C C14 P6G . . . Q 7 46.38 -52.727 -7.62 1 85.66 ? C14 P6G 401 H 1 
HETATM 15 C C15 P6G . . . Q 7 46.19 -52.742 -9.14 1 88.55 ? C15 P6G 401 H 1 
HETATM 16 O O16 P6G . . . Q 7 47.299 -52.142 -9.748 1 95.13 ? O16 P6G 401 H 1 
HETATM 17 C C17 P6G . . . Q 7 47.184 -50.755 -9.928 1 84.41 ? C17 P6G 401 H 1 
HETATM 18 C C18 P6G . . . Q 7 48.206 -50.01 -9.052 1 92.12 ? C18 P6G 401 H 1 
HETATM 19 O O19 P6G . . . Q 7 47.753 -49.833 -7.728 1 78.25 ? O19 P6G 401 H 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           19 
#