data_6KE0 # _model_server_result.job_id vVGSWZ7yTt3bDKCPImTiOQ _model_server_result.datetime_utc '2024-11-22 10:02:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ke0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":803}' # _entry.id 6KE0 # _exptl.entry_id 6KE0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 361.4 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(5,7-dimethyl-[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)-1-[(2S)-2-methyl-1,2-dihydroimidazo[1,2-a]benzimidazol-3-yl]ethanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KE0 _cell.length_a 50.398 _cell.length_b 81.553 _cell.length_c 160.763 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KE0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 85 A HIS 529 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc2 A NE2 HIS 119 A HIS 563 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc3 A OD2 ASP 120 A ASP 564 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc4 A OD1 ASP 120 A ASP 564 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc5 A OD1 ASP 230 A ASP 674 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc6 B NE2 HIS 85 B HIS 529 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc7 B NE2 HIS 119 B HIS 563 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc8 B OD2 ASP 120 B ASP 564 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc9 B OD1 ASP 120 B ASP 564 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc10 B OD1 ASP 230 B ASP 674 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? # _chem_comp.formula 'C19 H19 N7 O' _chem_comp.formula_weight 361.4 _chem_comp.id D7C _chem_comp.mon_nstd_flag . _chem_comp.name 2-(5,7-dimethyl-[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)-1-[(2S)-2-methyl-1,2-dihydroimidazo[1,2-a]benzimidazol-3-yl]ethanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D7C sing 83 n n C1 N4 D7C sing 84 n n C12 C11 D7C doub 85 n y C12 C7 D7C sing 86 n y C11 C10 D7C sing 87 n y C2 C27 D7C sing 88 n n C2 N3 D7C sing 89 n n N4 C7 D7C sing 90 n y N4 C5 D7C sing 91 n y C7 C8 D7C doub 92 n y C10 C9 D7C doub 93 n y N3 C5 D7C sing 94 n n N3 C13 D7C sing 95 n n C5 N6 D7C doub 96 n y C8 C9 D7C sing 97 n y C8 N6 D7C sing 98 n y O14 C13 D7C doub 99 n n C13 C15 D7C sing 100 n n C25 C21 D7C sing 101 n n C15 C16 D7C sing 102 n n N17 C16 D7C doub 103 n y N17 N20 D7C sing 104 n y C16 N18 D7C sing 105 n y C21 N20 D7C sing 106 n y C21 C22 D7C doub 107 n y N20 C19 D7C sing 108 n y C22 C23 D7C sing 109 n y N18 C19 D7C doub 110 n y C19 N24 D7C sing 111 n y C23 N24 D7C doub 112 n y C23 C26 D7C sing 113 n n C10 H1 D7C sing 114 n n C11 H2 D7C sing 115 n n C9 H3 D7C sing 116 n n C12 H4 D7C sing 117 n n C22 H5 D7C sing 118 n n C1 H6 D7C sing 119 n n C1 H7 D7C sing 120 n n C2 H8 D7C sing 121 n n C25 H9 D7C sing 122 n n C25 H10 D7C sing 123 n n C25 H11 D7C sing 124 n n C26 H12 D7C sing 125 n n C26 H13 D7C sing 126 n n C26 H14 D7C sing 127 n n C27 H15 D7C sing 128 n n C27 H16 D7C sing 129 n n C27 H17 D7C sing 130 n n C15 H18 D7C sing 131 n n C15 H19 D7C sing 132 n n # _atom_sites.entry_id 6KE0 _atom_sites.fract_transf_matrix[1][1] 0.019842 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 801 801 ZN ZN . D 3 MG A 1 802 802 MG MG . E 4 D7C A 1 803 1 D7C UNL . F 2 ZN B 1 801 801 ZN ZN . G 3 MG B 1 802 802 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 D7C . . . E 4 26.907 4.229 56.403 1 42.01 ? C10 D7C 803 A 1 HETATM 2 C C11 D7C . . . E 4 26.763 4.631 55.091 1 41.31 ? C11 D7C 803 A 1 HETATM 3 C C9 D7C . . . E 4 25.887 4.335 57.323 1 41.78 ? C9 D7C 803 A 1 HETATM 4 C C12 D7C . . . E 4 25.591 5.163 54.601 1 42.08 ? C12 D7C 803 A 1 HETATM 5 C C8 D7C . . . E 4 24.689 4.862 56.863 1 42.24 ? C8 D7C 803 A 1 HETATM 6 C C7 D7C . . . E 4 24.581 5.255 55.534 1 42.39 ? C7 D7C 803 A 1 HETATM 7 C C16 D7C . . . E 4 19.874 4.258 59.376 1 42.65 ? C16 D7C 803 A 1 HETATM 8 C C19 D7C . . . E 4 18.65 3.556 60.909 1 43.75 ? C19 D7C 803 A 1 HETATM 9 C C5 D7C . . . E 4 22.719 5.584 56.659 1 40.53 ? C5 D7C 803 A 1 HETATM 10 C C22 D7C . . . E 4 16.325 2.003 60.645 1 40.75 ? C22 D7C 803 A 1 HETATM 11 C C21 D7C . . . E 4 17.002 2.371 59.557 1 41.55 ? C21 D7C 803 A 1 HETATM 12 C C23 D7C . . . E 4 16.929 2.493 61.913 1 42.31 ? C23 D7C 803 A 1 HETATM 13 C C13 D7C . . . E 4 20.436 5.548 57.331 1 40.89 ? C13 D7C 803 A 1 HETATM 14 C C1 D7C . . . E 4 22.458 6.263 54.43 1 38.94 ? C1 D7C 803 A 1 HETATM 15 C C2 D7C . . . E 4 21.26 6.665 55.254 1 38.21 ? C2 D7C 803 A 1 HETATM 16 C C25 D7C . . . E 4 16.575 1.987 58.175 1 39.77 ? C25 D7C 803 A 1 HETATM 17 C C26 D7C . . . E 4 16.214 2.117 63.173 1 41.43 ? C26 D7C 803 A 1 HETATM 18 C C27 D7C . . . E 4 21.289 8.166 55.402 1 36.39 ? C27 D7C 803 A 1 HETATM 19 C C15 D7C . . . E 4 20.945 4.923 58.618 1 41.69 ? C15 D7C 803 A 1 HETATM 20 N N6 D7C . . . E 4 23.521 5.075 57.563 1 40.43 ? N6 D7C 803 A 1 HETATM 21 N N18 D7C . . . E 4 19.746 4.273 60.74 1 41.87 ? N18 D7C 803 A 1 HETATM 22 N N17 D7C . . . E 4 18.93 3.58 58.724 1 44.36 ? N17 D7C 803 A 1 HETATM 23 N N24 D7C . . . E 4 18.006 3.212 62.048 1 44.3 ? N24 D7C 803 A 1 HETATM 24 N N4 D7C . . . E 4 23.299 5.707 55.456 1 40.63 ? N4 D7C 803 A 1 HETATM 25 N N20 D7C . . . E 4 18.14 3.128 59.706 1 43.53 ? N20 D7C 803 A 1 HETATM 26 N N3 D7C . . . E 4 21.457 6.059 56.55 1 40.28 ? N3 D7C 803 A 1 HETATM 27 O O14 D7C . . . E 4 19.251 5.601 57.017 1 37.16 ? O14 D7C 803 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 27 #