data_6KE5 # _model_server_result.job_id wFIuwKXlSmIrhFu4X7e8Ug _model_server_result.datetime_utc '2024-11-16 19:03:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ke5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1301}' # _entry.id 6KE5 # _exptl.entry_id 6KE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.876 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description amlodipine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KE5 _cell.length_a 124.73 _cell.length_b 124.99 _cell.length_c 191.94 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD2 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 195 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 1178 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id CA _struct_conn.ptnr2_label_comp_id CA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CA _struct_conn.ptnr2_auth_seq_id 1302 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.645 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H25 Cl N2 O5' _chem_comp.formula_weight 408.876 _chem_comp.id 6UB _chem_comp.mon_nstd_flag . _chem_comp.name amlodipine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '~{O}3-ethyl ~{O}5-methyl (4~{S})-2-(2-azanylethoxymethyl)-4-(2-chlorophenyl)-6-methyl-1,4-dihydropyridine-3,5-dicarboxylate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAH CAJ 6UB doub 1 n y CAH CAI 6UB sing 2 n y CAJ CAZ 6UB sing 3 n y CAI CAK 6UB doub 4 n y CLAG CAZ 6UB sing 5 n n CAZ CBA 6UB doub 6 n y CAK CBA 6UB sing 7 n y CBA CBB 6UB sing 8 n n OAE CAU 6UB doub 9 n n CBB CAX 6UB sing 10 n n CBB CAY 6UB sing 11 n n CAX CAU 6UB sing 12 n n CAX CAT 6UB doub 13 n n CAU OAQ 6UB sing 14 n n CAY CAV 6UB sing 15 n n CAY CAW 6UB doub 16 n n CAL OAS 6UB sing 17 n n CAL CAA 6UB sing 18 n n CAV OAF 6UB doub 19 n n CAV OAS 6UB sing 20 n n NAP CAT 6UB sing 21 n n NAP CAW 6UB sing 22 n n CAT CAC 6UB sing 23 n n CAW C24 6UB sing 24 n n OAQ CAB 6UB sing 25 n n C24 O25 6UB sing 26 n n O25 C26 6UB sing 27 n n C26 C27 6UB sing 28 n n C27 N28 6UB sing 29 n n CAA H1 6UB sing 30 n n CAA H2 6UB sing 31 n n CAA H3 6UB sing 32 n n CAL H4 6UB sing 33 n n CAL H5 6UB sing 34 n n NAP H6 6UB sing 35 n n CBB H9 6UB sing 36 n n CAK H10 6UB sing 37 n n CAI H11 6UB sing 38 n n CAH H12 6UB sing 39 n n CAJ H13 6UB sing 40 n n CAB H14 6UB sing 41 n n CAB H15 6UB sing 42 n n CAB H16 6UB sing 43 n n CAC H17 6UB sing 44 n n CAC H18 6UB sing 45 n n CAC H19 6UB sing 46 n n C24 H20 6UB sing 47 n n C24 H21 6UB sing 48 n n C26 H22 6UB sing 49 n n C26 H23 6UB sing 50 n n C27 H24 6UB sing 51 n n C27 H25 6UB sing 52 n n N28 H26 6UB sing 53 n n N28 H27 6UB sing 54 n n # _atom_sites.entry_id 6KE5 _atom_sites.fract_transf_matrix[1][1] 0.008017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LPC A 1 1301 1308 LPC PX5 . F 3 CA A 1 1302 2 CA CA . G 4 G3P A 1 1303 1305 G3P PX6 . H 4 G3P A 1 1304 1306 G3P PX7 . I 5 6UB B 1 1301 5 6UB AMX . J 4 G3P B 1 1302 1308 G3P PX7 . K 2 LPC C 1 1301 1310 LPC PX5 . L 6 D6C C 1 1302 8 D6C LIG . M 3 CA C 1 1303 4 CA CA . N 4 G3P C 1 1304 1304 G3P PX6 . O 2 LPC D 1 1301 1309 LPC PX5 . P 3 CA D 1 1302 3 CA CA . Q 4 G3P D 1 1303 1303 G3P PX6 . R 7 HOH C 1 1401 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 6UB . . . I 5 27.819 158.902 11.577 1 66.54 ? CAA 6UB 1301 B 1 HETATM 2 C CAL 6UB . . . I 5 26.795 160.027 11.447 1 69.93 ? CAL 6UB 1301 B 1 HETATM 3 O OAS 6UB . . . I 5 26.761 160.713 12.671 1 67.75 ? OAS 6UB 1301 B 1 HETATM 4 C CAV 6UB . . . I 5 27.15 162.054 12.729 1 67.36 ? CAV 6UB 1301 B 1 HETATM 5 O OAF 6UB . . . I 5 27.978 162.495 12.006 1 68.19 ? OAF 6UB 1301 B 1 HETATM 6 C CAY 6UB . . . I 5 26.482 162.968 13.759 1 67.66 ? CAY 6UB 1301 B 1 HETATM 7 C CAW 6UB . . . I 5 26.219 162.521 14.991 1 72.17 ? CAW 6UB 1301 B 1 HETATM 8 N NAP 6UB . . . I 5 25.4 163.317 16 1 71.02 ? NAP 6UB 1301 B 1 HETATM 9 C CAT 6UB . . . I 5 24.978 164.636 15.517 1 68.53 ? CAT 6UB 1301 B 1 HETATM 10 C CAX 6UB . . . I 5 25.48 165.183 14.411 1 64.06 ? CAX 6UB 1301 B 1 HETATM 11 C CBB 6UB . . . I 5 26.028 164.342 13.32 1 63.04 ? CBB 6UB 1301 B 1 HETATM 12 C CBA 6UB . . . I 5 25.33 164.487 11.927 1 62.42 ? CBA 6UB 1301 B 1 HETATM 13 C CAK 6UB . . . I 5 24.121 163.976 11.553 1 61.98 ? CAK 6UB 1301 B 1 HETATM 14 C CAI 6UB . . . I 5 23.703 164.206 10.264 1 60.58 ? CAI 6UB 1301 B 1 HETATM 15 C CAH 6UB . . . I 5 24.474 164.943 9.385 1 56.41 ? CAH 6UB 1301 B 1 HETATM 16 C CAJ 6UB . . . I 5 25.684 165.454 9.781 1 58.23 ? CAJ 6UB 1301 B 1 HETATM 17 C CAZ 6UB . . . I 5 26.103 165.213 11.055 1 64.62 ? CAZ 6UB 1301 B 1 HETATM 18 CL CLAG 6UB . . . I 5 27.643 165.809 11.733 1 74.37 ? CLAG 6UB 1301 B 1 HETATM 19 C CAU 6UB . . . I 5 25.105 166.655 13.886 1 60.21 ? CAU 6UB 1301 B 1 HETATM 20 O OAE 6UB . . . I 5 24.254 166.823 13.133 1 58.06 ? OAE 6UB 1301 B 1 HETATM 21 O OAQ 6UB . . . I 5 25.904 167.712 14.345 1 62.33 ? OAQ 6UB 1301 B 1 HETATM 22 C CAB 6UB . . . I 5 27.013 167.384 15.138 1 61.84 ? CAB 6UB 1301 B 1 HETATM 23 C CAC 6UB . . . I 5 24.44 165.53 16.652 1 63.92 ? CAC 6UB 1301 B 1 HETATM 24 C C24 6UB . . . I 5 26.558 161.212 15.402 1 69.32 ? C24 6UB 1301 B 1 HETATM 25 O O25 6UB . . . I 5 27.84 161.475 16.034 1 70.81 ? O25 6UB 1301 B 1 HETATM 26 C C26 6UB . . . I 5 27.766 162.293 17.173 1 70.69 ? C26 6UB 1301 B 1 HETATM 27 C C27 6UB . . . I 5 29.083 163.11 17.263 1 69.08 ? C27 6UB 1301 B 1 HETATM 28 N N28 6UB . . . I 5 28.824 164.277 18.083 1 65.38 ? N28 6UB 1301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 28 #