data_6KE5 # _model_server_result.job_id yxehr-3Bzsc_2PEbilCvmA _model_server_result.datetime_utc '2024-11-16 18:52:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ke5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1301}' # _entry.id 6KE5 # _exptl.entry_id 6KE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.585 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KE5 _cell.length_a 124.73 _cell.length_b 124.99 _cell.length_c 191.94 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 K N N ? 2 O N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD2 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 195 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 1178 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id CA _struct_conn.ptnr2_label_comp_id CA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CA _struct_conn.ptnr2_auth_seq_id 1302 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.645 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H47 N O7 P 1' _chem_comp.formula_weight 468.585 _chem_comp.id LPC _chem_comp.mon_nstd_flag . _chem_comp.name '[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C0A N1 LPC sing 310 n n C0A H0A1 LPC sing 311 n n C0A H0A2 LPC sing 312 n n C0A H0A3 LPC sing 313 n n C0B N1 LPC sing 314 n n C0B H0B1 LPC sing 315 n n C0B H0B2 LPC sing 316 n n C0B H0B3 LPC sing 317 n n C0C N1 LPC sing 318 n n C0C H0C1 LPC sing 319 n n C0C H0C2 LPC sing 320 n n C0C H0C3 LPC sing 321 n n N1 C2 LPC sing 322 n n C2 C3 LPC sing 323 n n C2 H21 LPC sing 324 n n C2 H22 LPC sing 325 n n C3 O4 LPC sing 326 n n C3 H31 LPC sing 327 n n C3 H32 LPC sing 328 n n O4 P5 LPC sing 329 n n P5 O5A LPC sing 330 n n P5 O5B LPC doub 331 n n P5 O6 LPC sing 332 n n O5A HO5A LPC sing 333 n n O6 C7 LPC sing 334 n n C7 C8 LPC sing 335 n n C7 H71 LPC sing 336 n n C7 H72 LPC sing 337 n n C8 O8 LPC sing 338 n n C8 C9 LPC sing 339 n n C8 H8 LPC sing 340 n n O8 HO8 LPC sing 341 n n C9 OQ2 LPC sing 342 n n C9 H91 LPC sing 343 n n C9 H92 LPC sing 344 n n OQ1 CA LPC doub 345 n n OQ2 CA LPC sing 346 n n CA CB LPC sing 347 n n CB CC LPC sing 348 n n CB HB1 LPC sing 349 n n CB HB2 LPC sing 350 n n CC CD LPC sing 351 n n CC HC1 LPC sing 352 n n CC HC2 LPC sing 353 n n CD CE LPC sing 354 n n CD HD1 LPC sing 355 n n CD HD2 LPC sing 356 n n CE CF LPC sing 357 n n CE HE1 LPC sing 358 n n CE HE2 LPC sing 359 n n CF CG LPC sing 360 n n CF HF1 LPC sing 361 n n CF HF2 LPC sing 362 n n CG CH LPC sing 363 n n CG HG1 LPC sing 364 n n CG HG2 LPC sing 365 n n CH CI LPC sing 366 n n CH HH1 LPC sing 367 n n CH HH2 LPC sing 368 n n CI CJ LPC sing 369 n n CI HI1 LPC sing 370 n n CI HI2 LPC sing 371 n n CJ CK LPC sing 372 n n CJ HJ1 LPC sing 373 n n CJ HJ2 LPC sing 374 n n CK CL LPC sing 375 n n CK HK1 LPC sing 376 n n CK HK2 LPC sing 377 n n CL CM LPC sing 378 n n CL HL1 LPC sing 379 n n CL HL2 LPC sing 380 n n CM CN LPC sing 381 n n CM HM1 LPC sing 382 n n CM HM2 LPC sing 383 n n CN HN1 LPC sing 384 n n CN HN2 LPC sing 385 n n CN HN3 LPC sing 386 n n # _atom_sites.entry_id 6KE5 _atom_sites.fract_transf_matrix[1][1] 0.008017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LPC A 1 1301 1308 LPC PX5 . F 3 CA A 1 1302 2 CA CA . G 4 G3P A 1 1303 1305 G3P PX6 . H 4 G3P A 1 1304 1306 G3P PX7 . I 5 6UB B 1 1301 5 6UB AMX . J 4 G3P B 1 1302 1308 G3P PX7 . K 2 LPC C 1 1301 1310 LPC PX5 . L 6 D6C C 1 1302 8 D6C LIG . M 3 CA C 1 1303 4 CA CA . N 4 G3P C 1 1304 1304 G3P PX6 . O 2 LPC D 1 1301 1309 LPC PX5 . P 3 CA D 1 1302 3 CA CA . Q 4 G3P D 1 1303 1303 G3P PX6 . R 7 HOH C 1 1401 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 LPC . . . O 2 54.766 182.462 9.6 1 44.96 ? C3 LPC 1301 D 1 HETATM 2 O O4 LPC . . . O 2 54.689 181.088 9.986 1 50.21 ? O4 LPC 1301 D 1 HETATM 3 P P5 LPC . . . O 2 53.263 180.526 10.534 1 48.04 ? P5 LPC 1301 D 1 HETATM 4 O O5A LPC . . . O 2 52.137 181.576 10.171 1 37.89 ? O5A LPC 1301 D 1 HETATM 5 O O5B LPC . . . O 2 52.951 179.212 9.792 1 45.08 ? O5B LPC 1301 D 1 HETATM 6 O O6 LPC . . . O 2 53.464 180.238 12.114 1 43.28 ? O6 LPC 1301 D 1 HETATM 7 C C7 LPC . . . O 2 52.342 180.342 12.979 1 45.25 ? C7 LPC 1301 D 1 HETATM 8 C C8 LPC . . . O 2 52.845 179.956 14.371 1 45.88 ? C8 LPC 1301 D 1 HETATM 9 O O8 LPC . . . O 2 53.742 178.872 14.274 1 49.94 ? O8 LPC 1301 D 1 HETATM 10 C C9 LPC . . . O 2 51.756 179.563 15.287 1 44.05 ? C9 LPC 1301 D 1 HETATM 11 O OQ1 LPC . . . O 2 49.756 182.084 14.968 1 43.94 ? OQ1 LPC 1301 D 1 HETATM 12 O OQ2 LPC . . . O 2 50.53 180.009 14.781 1 45.56 ? OQ2 LPC 1301 D 1 HETATM 13 C CA LPC . . . O 2 49.705 180.829 15.57 1 44.07 ? CA LPC 1301 D 1 HETATM 14 C CB LPC . . . O 2 50.162 180.86 17.069 1 41.75 ? CB LPC 1301 D 1 HETATM 15 C CC LPC . . . O 2 49.156 181.364 18.074 1 39.97 ? CC LPC 1301 D 1 HETATM 16 C CD LPC . . . O 2 48.897 180.344 19.163 1 39.89 ? CD LPC 1301 D 1 HETATM 17 C CE LPC . . . O 2 47.685 180.649 20.074 1 38.89 ? CE LPC 1301 D 1 HETATM 18 C CF LPC . . . O 2 47.421 179.624 21.148 1 41.93 ? CF LPC 1301 D 1 HETATM 19 C CG LPC . . . O 2 48.781 179.225 21.775 1 40.18 ? CG LPC 1301 D 1 HETATM 20 C CH LPC . . . O 2 49.352 180.301 22.742 1 44.56 ? CH LPC 1301 D 1 HETATM 21 C CI LPC . . . O 2 49.667 179.786 24.186 1 42.89 ? CI LPC 1301 D 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 21 #