data_6KE5 # _model_server_result.job_id '_rNfY31NTjDK6F3iCYQBZQ' _model_server_result.datetime_utc '2025-08-04 03:35:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ke5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1302}' # _entry.id 6KE5 # _exptl.entry_id 6KE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.518 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{S},3~{R})-5-[2-(dimethylamino)ethyl]-2-(4-methoxyphenyl)-4-oxidanylidene-2,3-dihydro-1,5-benzothiazepin-3-yl] ethanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KE5 _cell.length_a 124.73 _cell.length_b 124.99 _cell.length_c 191.94 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD2 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 195 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 1178 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id CA _struct_conn.ptnr2_label_comp_id CA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CA _struct_conn.ptnr2_auth_seq_id 1302 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.645 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H26 N2 O4 S' _chem_comp.formula_weight 414.518 _chem_comp.id D6C _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{S},3~{R})-5-[2-(dimethylamino)ethyl]-2-(4-methoxyphenyl)-4-oxidanylidene-2,3-dihydro-1,5-benzothiazepin-3-yl] ethanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 N20 D6C sing 124 n n N20 C22 D6C sing 125 n n N20 C19 D6C sing 126 n n S10 C11 D6C sing 127 n n S10 C09 D6C sing 128 n n C12 C11 D6C doub 129 n y C12 C13 D6C sing 130 n y C11 C16 D6C sing 131 n y O02 C03 D6C sing 132 n n O02 C01 D6C sing 133 n n C18 C19 D6C sing 134 n n C18 N17 D6C sing 135 n n C08 C03 D6C doub 136 n y C08 C07 D6C sing 137 n y C03 C04 D6C sing 138 n y C13 C14 D6C doub 139 n y C07 C06 D6C doub 140 n y C16 N17 D6C sing 141 n n C16 C15 D6C doub 142 n y C04 C05 D6C doub 143 n y N17 C23 D6C sing 144 n n C06 C05 D6C sing 145 n y C06 C09 D6C sing 146 n n C14 C15 D6C sing 147 n y C09 C25 D6C sing 148 n n C23 O24 D6C doub 149 n n C23 C25 D6C sing 150 n n C25 O26 D6C sing 151 n n O26 C27 D6C sing 152 n n O29 C27 D6C doub 153 n n C27 C28 D6C sing 154 n n C13 H1 D6C sing 155 n n C15 H2 D6C sing 156 n n C21 H3 D6C sing 157 n n C21 H4 D6C sing 158 n n C21 H5 D6C sing 159 n n C22 H6 D6C sing 160 n n C22 H7 D6C sing 161 n n C22 H8 D6C sing 162 n n C28 H9 D6C sing 163 n n C28 H10 D6C sing 164 n n C28 H11 D6C sing 165 n n C01 H12 D6C sing 166 n n C01 H13 D6C sing 167 n n C01 H14 D6C sing 168 n n C04 H15 D6C sing 169 n n C05 H16 D6C sing 170 n n C07 H17 D6C sing 171 n n C08 H18 D6C sing 172 n n C09 H19 D6C sing 173 n n C12 H20 D6C sing 174 n n C14 H21 D6C sing 175 n n C18 H22 D6C sing 176 n n C18 H23 D6C sing 177 n n C19 H24 D6C sing 178 n n C19 H25 D6C sing 179 n n C25 H27 D6C sing 180 n n # _atom_sites.entry_id 6KE5 _atom_sites.fract_transf_matrix[1][1] 0.008017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LPC A 1 1301 1308 LPC PX5 . F 3 CA A 1 1302 2 CA CA . G 4 G3P A 1 1303 1305 G3P PX6 . H 4 G3P A 1 1304 1306 G3P PX7 . I 5 6UB B 1 1301 5 6UB AMX . J 4 G3P B 1 1302 1308 G3P PX7 . K 2 LPC C 1 1301 1310 LPC PX5 . L 6 D6C C 1 1302 8 D6C LIG . M 3 CA C 1 1303 4 CA CA . N 4 G3P C 1 1304 1304 G3P PX6 . O 2 LPC D 1 1301 1309 LPC PX5 . P 3 CA D 1 1302 3 CA CA . Q 4 G3P D 1 1303 1303 G3P PX6 . R 7 HOH C 1 1401 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 D6C . . . L 6 32.923 180.915 24.259 1 56.52 ? C13 D6C 1302 C 1 HETATM 2 C C15 D6C . . . L 6 32.295 183.123 24.894 1 60.38 ? C15 D6C 1302 C 1 HETATM 3 C C21 D6C . . . L 6 32.651 188.051 22.022 1 47.78 ? C21 D6C 1302 C 1 HETATM 4 C C22 D6C . . . L 6 33.629 189.468 23.734 1 51.21 ? C22 D6C 1302 C 1 HETATM 5 C C28 D6C . . . L 6 34.691 185.104 29.073 1 78.59 ? C28 D6C 1302 C 1 HETATM 6 C C01 D6C . . . L 6 42.999 182.999 24.968 1 47.7 ? C01 D6C 1302 C 1 HETATM 7 O O02 D6C . . . L 6 42.317 183.749 23.952 1 51.08 ? O02 D6C 1302 C 1 HETATM 8 C C03 D6C . . . L 6 40.953 183.673 24.137 1 49.24 ? C03 D6C 1302 C 1 HETATM 9 C C04 D6C . . . L 6 40.329 182.51 24.481 1 49.5 ? C04 D6C 1302 C 1 HETATM 10 C C05 D6C . . . L 6 38.991 182.513 24.682 1 53.46 ? C05 D6C 1302 C 1 HETATM 11 C C06 D6C . . . L 6 38.258 183.674 24.622 1 56.23 ? C06 D6C 1302 C 1 HETATM 12 C C07 D6C . . . L 6 38.89 184.879 24.353 1 56.37 ? C07 D6C 1302 C 1 HETATM 13 C C08 D6C . . . L 6 40.237 184.852 24.068 1 51.75 ? C08 D6C 1302 C 1 HETATM 14 C C09 D6C . . . L 6 36.759 183.626 24.905 1 55.95 ? C09 D6C 1302 C 1 HETATM 15 S S10 D6C . . . L 6 35.986 183.336 23.318 1 54.76 ? S10 D6C 1302 C 1 HETATM 16 C C11 D6C . . . L 6 34.371 182.72 23.868 1 57.72 ? C11 D6C 1302 C 1 HETATM 17 C C12 D6C . . . L 6 34.11 181.364 23.76 1 56.65 ? C12 D6C 1302 C 1 HETATM 18 C C14 D6C . . . L 6 32.008 181.792 24.852 1 61.84 ? C14 D6C 1302 C 1 HETATM 19 C C16 D6C . . . L 6 33.519 183.634 24.436 1 60.32 ? C16 D6C 1302 C 1 HETATM 20 N N17 D6C . . . L 6 33.882 185.085 24.544 1 65.36 ? N17 D6C 1302 C 1 HETATM 21 C C18 D6C . . . L 6 32.77 185.865 23.986 1 61.61 ? C18 D6C 1302 C 1 HETATM 22 C C19 D6C . . . L 6 32.623 187.367 24.305 1 57.5 ? C19 D6C 1302 C 1 HETATM 23 N N20 D6C . . . L 6 33.353 188.114 23.309 1 50.15 ? N20 D6C 1302 C 1 HETATM 24 C C23 D6C . . . L 6 35.117 185.712 25.083 1 64.66 ? C23 D6C 1302 C 1 HETATM 25 O O24 D6C . . . L 6 35.302 186.898 25.141 1 64.76 ? O24 D6C 1302 C 1 HETATM 26 C C25 D6C . . . L 6 36.276 184.886 25.669 1 64.99 ? C25 D6C 1302 C 1 HETATM 27 O O26 D6C . . . L 6 35.96 184.461 26.978 1 76.84 ? O26 D6C 1302 C 1 HETATM 28 C C27 D6C . . . L 6 35.583 185.463 27.884 1 79.88 ? C27 D6C 1302 C 1 HETATM 29 O O29 D6C . . . L 6 35.937 186.579 27.731 1 79.1 ? O29 D6C 1302 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #