data_6KE5 # _model_server_result.job_id tOtjlrYCkpfWOqSdCb8qwA _model_server_result.datetime_utc '2024-11-16 18:44:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ke5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1303}' # _entry.id 6KE5 # _exptl.entry_id 6KE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.074 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SN-GLYCEROL-3-PHOSPHATE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KE5 _cell.length_a 124.73 _cell.length_b 124.99 _cell.length_c 191.94 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 J N N ? 4 N N N ? 4 Q N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD2 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 195 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 1178 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id CA _struct_conn.ptnr2_label_comp_id CA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CA _struct_conn.ptnr2_auth_seq_id 1302 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.645 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H9 O6 P' _chem_comp.formula_weight 172.074 _chem_comp.id G3P _chem_comp.mon_nstd_flag . _chem_comp.name SN-GLYCEROL-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 G3P sing 181 n n C1 C2 G3P sing 182 n n C2 O2 G3P sing 183 n n C2 C3 G3P sing 184 n n C3 O1P G3P sing 185 n n O1P P G3P sing 186 n n O4P P G3P sing 187 n n O2P P G3P doub 188 n n O3P P G3P sing 189 n n O1 HO1 G3P sing 190 n n C1 H11 G3P sing 191 n n C1 H12 G3P sing 192 n n C2 H2 G3P sing 193 n n O2 HO2 G3P sing 194 n n C3 H31 G3P sing 195 n n C3 H32 G3P sing 196 n n O3P HOP3 G3P sing 197 n n O4P HOP4 G3P sing 198 n n # _atom_sites.entry_id 6KE5 _atom_sites.fract_transf_matrix[1][1] 0.008017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LPC A 1 1301 1308 LPC PX5 . F 3 CA A 1 1302 2 CA CA . G 4 G3P A 1 1303 1305 G3P PX6 . H 4 G3P A 1 1304 1306 G3P PX7 . I 5 6UB B 1 1301 5 6UB AMX . J 4 G3P B 1 1302 1308 G3P PX7 . K 2 LPC C 1 1301 1310 LPC PX5 . L 6 D6C C 1 1302 8 D6C LIG . M 3 CA C 1 1303 4 CA CA . N 4 G3P C 1 1304 1304 G3P PX6 . O 2 LPC D 1 1301 1309 LPC PX5 . P 3 CA D 1 1302 3 CA CA . Q 4 G3P D 1 1303 1303 G3P PX6 . R 7 HOH C 1 1401 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 G3P . . . Q 4 38.792 165.464 9.398 1 42.42 ? O1 G3P 1303 D 1 HETATM 2 C C1 G3P . . . Q 4 37.99 164.427 9.99 1 43.34 ? C1 G3P 1303 D 1 HETATM 3 C C2 G3P . . . Q 4 37.695 163.429 8.872 1 44.4 ? C2 G3P 1303 D 1 HETATM 4 O O2 G3P . . . Q 4 36.513 163.784 8.195 1 45.31 ? O2 G3P 1303 D 1 HETATM 5 C C3 G3P . . . Q 4 38.838 163.34 7.866 1 43.75 ? C3 G3P 1303 D 1 HETATM 6 O O1P G3P . . . Q 4 38.245 162.836 6.684 1 49.84 ? O1P G3P 1303 D 1 HETATM 7 O O4P G3P . . . Q 4 38.667 160.261 7.175 1 53.25 ? O4P G3P 1303 D 1 HETATM 8 O O2P G3P . . . Q 4 37.898 161.032 4.816 1 45.31 ? O2P G3P 1303 D 1 HETATM 9 O O3P G3P . . . Q 4 40.26 161.607 5.615 1 60.25 ? O3P G3P 1303 D 1 HETATM 10 P P G3P . . . Q 4 38.78 161.378 6.066 1 65.66 ? P G3P 1303 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #