data_6KEB # _model_server_result.job_id t5KR1gYkbUZWWbvNxs_Gig _model_server_result.datetime_utc '2024-11-13 04:56:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6keb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1302}' # _entry.id 6KEB # _exptl.entry_id 6KEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 678.94 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KEB _cell.length_a 125.6 _cell.length_b 125.63 _cell.length_c 191.84 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 195 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 1178 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id I _struct_conn.ptnr2_label_atom_id CA _struct_conn.ptnr2_label_comp_id CA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CA _struct_conn.ptnr2_auth_seq_id 1301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.343 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C36 H73 N O8 P 1' _chem_comp.formula_weight 678.94 _chem_comp.id PX4 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX4 sing 321 n n O1 H1P PX4 sing 322 n n O2 P1 PX4 doub 323 n n P1 O3 PX4 sing 324 n n P1 O4 PX4 sing 325 n n O3 C1 PX4 sing 326 n n C1 C2 PX4 sing 327 n n C1 H1 PX4 sing 328 n n C1 H2 PX4 sing 329 n n C2 N1 PX4 sing 330 n n C2 H3 PX4 sing 331 n n C2 H4 PX4 sing 332 n n N1 C3 PX4 sing 333 n n N1 C4 PX4 sing 334 n n N1 C5 PX4 sing 335 n n C3 H5 PX4 sing 336 n n C3 H6 PX4 sing 337 n n C3 H7 PX4 sing 338 n n C4 H8 PX4 sing 339 n n C4 H9 PX4 sing 340 n n C4 H10 PX4 sing 341 n n C5 H11 PX4 sing 342 n n C5 H12 PX4 sing 343 n n C5 H13 PX4 sing 344 n n O4 C6 PX4 sing 345 n n C6 C7 PX4 sing 346 n n C6 H14 PX4 sing 347 n n C6 H15 PX4 sing 348 n n C7 C8 PX4 sing 349 n n C7 O7 PX4 sing 350 n n C7 H16 PX4 sing 351 n n C8 O5 PX4 sing 352 n n C8 H17 PX4 sing 353 n n C8 H18 PX4 sing 354 n n O5 C9 PX4 sing 355 n n C9 O6 PX4 doub 356 n n C9 C10 PX4 sing 357 n n C10 C11 PX4 sing 358 n n C10 H19 PX4 sing 359 n n C10 H20 PX4 sing 360 n n C11 C12 PX4 sing 361 n n C11 H21 PX4 sing 362 n n C11 H22 PX4 sing 363 n n C12 C13 PX4 sing 364 n n C12 H23 PX4 sing 365 n n C12 H24 PX4 sing 366 n n C13 C14 PX4 sing 367 n n C13 H25 PX4 sing 368 n n C13 H26 PX4 sing 369 n n C14 C15 PX4 sing 370 n n C14 H27 PX4 sing 371 n n C14 H28 PX4 sing 372 n n C15 C16 PX4 sing 373 n n C15 H29 PX4 sing 374 n n C15 H30 PX4 sing 375 n n C16 C17 PX4 sing 376 n n C16 H31 PX4 sing 377 n n C16 H32 PX4 sing 378 n n C17 C18 PX4 sing 379 n n C17 H33 PX4 sing 380 n n C17 H34 PX4 sing 381 n n C18 C19 PX4 sing 382 n n C18 H35 PX4 sing 383 n n C18 H36 PX4 sing 384 n n C19 C20 PX4 sing 385 n n C19 H37 PX4 sing 386 n n C19 H38 PX4 sing 387 n n C20 C21 PX4 sing 388 n n C20 H39 PX4 sing 389 n n C20 H40 PX4 sing 390 n n C21 C22 PX4 sing 391 n n C21 H41 PX4 sing 392 n n C21 H42 PX4 sing 393 n n C22 H43 PX4 sing 394 n n C22 H44 PX4 sing 395 n n C22 H45 PX4 sing 396 n n O7 C23 PX4 sing 397 n n C23 O8 PX4 doub 398 n n C23 C24 PX4 sing 399 n n C24 C25 PX4 sing 400 n n C24 H46 PX4 sing 401 n n C24 H47 PX4 sing 402 n n C25 C26 PX4 sing 403 n n C25 H48 PX4 sing 404 n n C25 H49 PX4 sing 405 n n C26 C27 PX4 sing 406 n n C26 H50 PX4 sing 407 n n C26 H51 PX4 sing 408 n n C27 C28 PX4 sing 409 n n C27 H52 PX4 sing 410 n n C27 H53 PX4 sing 411 n n C28 C29 PX4 sing 412 n n C28 H54 PX4 sing 413 n n C28 H55 PX4 sing 414 n n C29 C30 PX4 sing 415 n n C29 H56 PX4 sing 416 n n C29 H57 PX4 sing 417 n n C30 C31 PX4 sing 418 n n C30 H58 PX4 sing 419 n n C30 H59 PX4 sing 420 n n C31 C32 PX4 sing 421 n n C31 H60 PX4 sing 422 n n C31 H61 PX4 sing 423 n n C32 C33 PX4 sing 424 n n C32 H62 PX4 sing 425 n n C32 H63 PX4 sing 426 n n C33 C34 PX4 sing 427 n n C33 H64 PX4 sing 428 n n C33 H65 PX4 sing 429 n n C34 C35 PX4 sing 430 n n C34 H66 PX4 sing 431 n n C34 H67 PX4 sing 432 n n C35 C36 PX4 sing 433 n n C35 H68 PX4 sing 434 n n C35 H69 PX4 sing 435 n n C36 H70 PX4 sing 436 n n C36 H71 PX4 sing 437 n n C36 H72 PX4 sing 438 n n # _atom_sites.entry_id 6KEB _atom_sites.fract_transf_matrix[1][1] 0.007962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PX4 A 1 1301 1303 PX4 PX4 . F 2 PX4 A 1 1302 1305 PX4 PX4 . G 2 PX4 A 1 1303 1307 PX4 PX4 . H 2 PX4 A 1 1304 1303 PX4 PX4 . I 3 CA B 1 1301 1 CA CA . J 2 PX4 B 1 1302 1301 PX4 PX4 . K 2 PX4 B 1 1303 1302 PX4 PX4 . L 3 CA C 1 1301 2 CA CA . M 2 PX4 C 1 1302 1304 PX4 PX4 . N 2 PX4 C 1 1303 1301 PX4 PX4 . O 2 PX4 C 1 1304 1302 PX4 PX4 . P 2 PX4 D 1 1301 1304 PX4 PX4 . Q 2 PX4 D 1 1302 1301 PX4 PX4 . R 2 PX4 D 1 1303 1304 PX4 PX4 . S 4 D6C D 1 1304 1 D6C LIG . T 5 HOH B 1 1401 25 HOH HOH . T 5 HOH B 2 1402 54 HOH HOH . U 5 HOH C 1 1401 2 HOH HOH . U 5 HOH C 2 1402 121 HOH HOH . U 5 HOH C 3 1403 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX4 . . . F 2 54.098 -4.227 204.077 1 89.8 ? O1 PX4 1302 A 1 HETATM 2 O O2 PX4 . . . F 2 52.023 -4.741 203.101 1 80.89 ? O2 PX4 1302 A 1 HETATM 3 P P1 PX4 . . . F 2 53.072 -5.353 204.008 1 92.82 ? P1 PX4 1302 A 1 HETATM 4 O O3 PX4 . . . F 2 53.672 -6.783 203.382 1 76.73 ? O3 PX4 1302 A 1 HETATM 5 C C1 PX4 . . . F 2 54.619 -6.698 202.342 1 83.47 ? C1 PX4 1302 A 1 HETATM 6 O O4 PX4 . . . F 2 52.463 -5.704 205.52 1 84.65 ? O4 PX4 1302 A 1 HETATM 7 C C6 PX4 . . . F 2 53.056 -5.214 206.716 1 76.15 ? C6 PX4 1302 A 1 HETATM 8 C C7 PX4 . . . F 2 52.068 -5.194 207.904 1 69.05 ? C7 PX4 1302 A 1 HETATM 9 C C8 PX4 . . . F 2 50.894 -4.18 207.676 1 65.95 ? C8 PX4 1302 A 1 HETATM 10 O O5 PX4 . . . F 2 49.717 -4.454 208.433 1 64.07 ? O5 PX4 1302 A 1 HETATM 11 C C9 PX4 . . . F 2 49.14 -3.445 209.25 1 59.44 ? C9 PX4 1302 A 1 HETATM 12 O O6 PX4 . . . F 2 48.76 -2.267 208.528 1 52.96 ? O6 PX4 1302 A 1 HETATM 13 C C10 PX4 . . . F 2 47.855 -4.038 209.883 1 55.17 ? C10 PX4 1302 A 1 HETATM 14 C C11 PX4 . . . F 2 48.028 -4.979 211.062 1 59.48 ? C11 PX4 1302 A 1 HETATM 15 C C12 PX4 . . . F 2 48.016 -4.376 212.498 1 67.79 ? C12 PX4 1302 A 1 HETATM 16 C C13 PX4 . . . F 2 47.174 -5.166 213.573 1 70.4 ? C13 PX4 1302 A 1 HETATM 17 C C14 PX4 . . . F 2 47.771 -5.168 215 1 64.04 ? C14 PX4 1302 A 1 HETATM 18 C C15 PX4 . . . F 2 47.104 -6.169 215.956 1 64.35 ? C15 PX4 1302 A 1 HETATM 19 C C16 PX4 . . . F 2 47.059 -5.807 217.462 1 70.15 ? C16 PX4 1302 A 1 HETATM 20 C C17 PX4 . . . F 2 45.682 -5.383 217.916 1 67.06 ? C17 PX4 1302 A 1 HETATM 21 O O7 PX4 . . . F 2 51.688 -6.523 208.091 1 60.02 ? O7 PX4 1302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #