data_6KEB
#
_model_server_result.job_id            ZDV6t63TnS8f_qHWVoMOgg 
_model_server_result.datetime_utc      '2024-11-23 05:47:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6keb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":1304}' 
#
_entry.id    6KEB 
#
_exptl.entry_id    6KEB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              414.518 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{S},3~{R})-5-[2-(dimethylamino)ethyl]-2-(4-methoxyphenyl)-4-oxidanylidene-2,3-dihydro-1,5-benzothiazepin-3-yl] ethanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KEB 
_cell.length_a            125.6 
_cell.length_b            125.63 
_cell.length_c            191.84 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KEB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             S 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            OD1 
_struct_conn.ptnr1_label_comp_id            ASP 
_struct_conn.ptnr1_label_seq_id             195 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             ASP 
_struct_conn.ptnr1_auth_seq_id              1178 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            I 
_struct_conn.ptnr2_label_atom_id            CA 
_struct_conn.ptnr2_label_comp_id            CA 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CA 
_struct_conn.ptnr2_auth_seq_id              1301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.343 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C22 H26 N2 O4 S' 
_chem_comp.formula_weight    414.518 
_chem_comp.id                D6C 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{S},3~{R})-5-[2-(dimethylamino)ethyl]-2-(4-methoxyphenyl)-4-oxidanylidene-2,3-dihydro-1,5-benzothiazepin-3-yl] ethanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 N20 D6C sing 70 n n 
N20 C22 D6C sing 71 n n 
N20 C19 D6C sing 72 n n 
S10 C11 D6C sing 73 n n 
S10 C09 D6C sing 74 n n 
C12 C11 D6C doub 75 n y 
C12 C13 D6C sing 76 n y 
C11 C16 D6C sing 77 n y 
O02 C03 D6C sing 78 n n 
O02 C01 D6C sing 79 n n 
C18 C19 D6C sing 80 n n 
C18 N17 D6C sing 81 n n 
C08 C03 D6C doub 82 n y 
C08 C07 D6C sing 83 n y 
C03 C04 D6C sing 84 n y 
C13 C14 D6C doub 85 n y 
C07 C06 D6C doub 86 n y 
C16 N17 D6C sing 87 n n 
C16 C15 D6C doub 88 n y 
C04 C05 D6C doub 89 n y 
N17 C23 D6C sing 90 n n 
C06 C05 D6C sing 91 n y 
C06 C09 D6C sing 92 n n 
C14 C15 D6C sing 93 n y 
C09 C25 D6C sing 94 n n 
C23 O24 D6C doub 95 n n 
C23 C25 D6C sing 96 n n 
C25 O26 D6C sing 97 n n 
O26 C27 D6C sing 98 n n 
O29 C27 D6C doub 99 n n 
C27 C28 D6C sing 100 n n 
C13 H1 D6C sing 101 n n 
C15 H2 D6C sing 102 n n 
C21 H3 D6C sing 103 n n 
C21 H4 D6C sing 104 n n 
C21 H5 D6C sing 105 n n 
C22 H6 D6C sing 106 n n 
C22 H7 D6C sing 107 n n 
C22 H8 D6C sing 108 n n 
C28 H9 D6C sing 109 n n 
C28 H10 D6C sing 110 n n 
C28 H11 D6C sing 111 n n 
C01 H12 D6C sing 112 n n 
C01 H13 D6C sing 113 n n 
C01 H14 D6C sing 114 n n 
C04 H15 D6C sing 115 n n 
C05 H16 D6C sing 116 n n 
C07 H17 D6C sing 117 n n 
C08 H18 D6C sing 118 n n 
C09 H19 D6C sing 119 n n 
C12 H20 D6C sing 120 n n 
C14 H21 D6C sing 121 n n 
C18 H22 D6C sing 122 n n 
C18 H23 D6C sing 123 n n 
C19 H24 D6C sing 124 n n 
C19 H25 D6C sing 125 n n 
C25 H27 D6C sing 126 n n 
#
_atom_sites.entry_id                     6KEB 
_atom_sites.fract_transf_matrix[1][1]    0.007962 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00796 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005213 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PX4 A 1 1301 1303 PX4 PX4 . 
F 2 PX4 A 1 1302 1305 PX4 PX4 . 
G 2 PX4 A 1 1303 1307 PX4 PX4 . 
H 2 PX4 A 1 1304 1303 PX4 PX4 . 
I 3 CA B 1 1301 1 CA CA . 
J 2 PX4 B 1 1302 1301 PX4 PX4 . 
K 2 PX4 B 1 1303 1302 PX4 PX4 . 
L 3 CA C 1 1301 2 CA CA . 
M 2 PX4 C 1 1302 1304 PX4 PX4 . 
N 2 PX4 C 1 1303 1301 PX4 PX4 . 
O 2 PX4 C 1 1304 1302 PX4 PX4 . 
P 2 PX4 D 1 1301 1304 PX4 PX4 . 
Q 2 PX4 D 1 1302 1301 PX4 PX4 . 
R 2 PX4 D 1 1303 1304 PX4 PX4 . 
S 4 D6C D 1 1304 1 D6C LIG . 
T 5 HOH B 1 1401 25 HOH HOH . 
T 5 HOH B 2 1402 54 HOH HOH . 
U 5 HOH C 1 1401 2 HOH HOH . 
U 5 HOH C 2 1402 121 HOH HOH . 
U 5 HOH C 3 1403 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 D6C . . . S 4 24.588 4.236 215.482 1 68.63 ? C13 D6C 1304 D 1 
HETATM 2 C C15 D6C . . . S 4 25.834 2.514 216.569 1 75.17 ? C15 D6C 1304 D 1 
HETATM 3 C C21 D6C . . . S 4 28.073 -1.071 216.518 1 71.56 ? C21 D6C 1304 D 1 
HETATM 4 C C22 D6C . . . S 4 29.699 -0.109 217.853 1 83.53 ? C22 D6C 1304 D 1 
HETATM 5 C C28 D6C . . . S 4 31.351 0.587 214.833 1 87.78 ? C28 D6C 1304 D 1 
HETATM 6 C C01 D6C . . . S 4 34.006 9.707 215.646 1 95.48 ? C01 D6C 1304 D 1 
HETATM 7 O O02 D6C . . . S 4 33.927 8.752 216.655 1 107 ? O02 D6C 1304 D 1 
HETATM 8 C C03 D6C . . . S 4 32.877 7.862 216.457 1 95.65 ? C03 D6C 1304 D 1 
HETATM 9 C C04 D6C . . . S 4 32.029 7.461 217.479 1 97.87 ? C04 D6C 1304 D 1 
HETATM 10 C C05 D6C . . . S 4 31.005 6.57 217.205 1 92.32 ? C05 D6C 1304 D 1 
HETATM 11 C C06 D6C . . . S 4 30.843 6.092 215.919 1 89.71 ? C06 D6C 1304 D 1 
HETATM 12 C C07 D6C . . . S 4 31.702 6.498 214.931 1 84.05 ? C07 D6C 1304 D 1 
HETATM 13 C C08 D6C . . . S 4 32.712 7.378 215.191 1 83.89 ? C08 D6C 1304 D 1 
HETATM 14 C C09 D6C . . . S 4 29.74 5.105 215.528 1 90.87 ? C09 D6C 1304 D 1 
HETATM 15 S S10 D6C . . . S 4 28.252 5.737 216.291 1 69.04 ? S10 D6C 1304 D 1 
HETATM 16 C C11 D6C . . . S 4 26.872 4.602 216.185 1 80.13 ? C11 D6C 1304 D 1 
HETATM 17 C C12 D6C . . . S 4 25.699 5.055 215.597 1 70.58 ? C12 D6C 1304 D 1 
HETATM 18 C C14 D6C . . . S 4 24.664 2.948 215.986 1 70.86 ? C14 D6C 1304 D 1 
HETATM 19 C C16 D6C . . . S 4 26.973 3.333 216.654 1 83.63 ? C16 D6C 1304 D 1 
HETATM 20 N N17 D6C . . . S 4 28.186 2.84 217.348 1 93.65 ? N17 D6C 1304 D 1 
HETATM 21 C C18 D6C . . . S 4 27.83 2.082 218.536 1 81.54 ? C18 D6C 1304 D 1 
HETATM 22 C C19 D6C . . . S 4 27.497 0.655 218.093 1 85.91 ? C19 D6C 1304 D 1 
HETATM 23 N N20 D6C . . . S 4 28.484 0.166 217.142 1 83.3 ? N20 D6C 1304 D 1 
HETATM 24 C C23 D6C . . . S 4 29.632 2.994 217.14 1 100.13 ? C23 D6C 1304 D 1 
HETATM 25 O O24 D6C . . . S 4 30.406 2.498 217.895 1 101.23 ? O24 D6C 1304 D 1 
HETATM 26 C C25 D6C . . . S 4 30.255 3.72 215.948 1 94.86 ? C25 D6C 1304 D 1 
HETATM 27 O O26 D6C . . . S 4 30.174 2.84 214.856 1 93.98 ? O26 D6C 1304 D 1 
HETATM 28 C C27 D6C . . . S 4 31.332 2.091 214.633 1 92.58 ? C27 D6C 1304 D 1 
HETATM 29 O O29 D6C . . . S 4 32.313 2.629 214.278 1 98.41 ? O29 D6C 1304 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#