data_6KEE # _model_server_result.job_id 5QGhXiebLX-Z8PFD_j6ySQ _model_server_result.datetime_utc '2024-10-19 03:35:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kee # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6KEE # _exptl.entry_id 6KEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 445.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[2-[2,4-bis(fluoranyl)phenoxy]-5-(methylsulfonylmethyl)pyridin-3-yl]-8-methyl-2H-pyrrolo[1,2-a]pyrazin-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KEE _cell.length_a 32.737 _cell.length_b 47.703 _cell.length_c 79.537 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H17 F2 N3 O4 S' _chem_comp.formula_weight 445.439 _chem_comp.id D7U _chem_comp.mon_nstd_flag . _chem_comp.name 6-[2-[2,4-bis(fluoranyl)phenoxy]-5-(methylsulfonylmethyl)pyridin-3-yl]-8-methyl-2H-pyrrolo[1,2-a]pyrazin-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 S21 D7U sing 83 n n O24 S21 D7U doub 84 n n S21 O23 D7U doub 85 n n S21 C20 D7U sing 86 n n C20 C14 D7U sing 87 n n C10 C09 D7U sing 88 n n C13 C14 D7U doub 89 n y C13 C12 D7U sing 90 n y C8 C09 D7U sing 91 n y C8 C7 D7U doub 92 n y C09 C5 D7U doub 93 n y C14 C15 D7U sing 94 n y O11 C6 D7U doub 95 n n C7 C12 D7U sing 96 n n C7 N4 D7U sing 97 n y C5 C6 D7U sing 98 n n C5 N4 D7U sing 99 n y C12 C17 D7U doub 100 n y C6 N1 D7U sing 101 n n N4 C3 D7U sing 102 n n C15 N16 D7U doub 103 n y N1 C2 D7U sing 104 n n C3 C2 D7U doub 105 n n C17 N16 D7U sing 106 n y C17 O18 D7U sing 107 n n O18 C19 D7U sing 108 n n F30 C29 D7U sing 109 n n C19 C29 D7U doub 110 n y C19 C25 D7U sing 111 n y C29 C28 D7U sing 112 n y C25 C26 D7U doub 113 n y C28 C27 D7U doub 114 n y C27 C26 D7U sing 115 n y C27 F31 D7U sing 116 n n C10 H101 D7U sing 117 n n C10 H102 D7U sing 118 n n C10 H103 D7U sing 119 n n C13 H131 D7U sing 120 n n C15 H151 D7U sing 121 n n C20 H202 D7U sing 122 n n C20 H201 D7U sing 123 n n C22 H222 D7U sing 124 n n C22 H221 D7U sing 125 n n C22 H223 D7U sing 126 n n C26 H261 D7U sing 127 n n C28 H281 D7U sing 128 n n C2 H021 D7U sing 129 n n C3 H031 D7U sing 130 n n C8 H081 D7U sing 131 n n C25 H251 D7U sing 132 n n N1 H2 D7U sing 133 n n # _atom_sites.entry_id 6KEE _atom_sites.fract_transf_matrix[1][1] 0.030546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D7U A 1 201 1 D7U LIG . C 3 HOH A 1 301 2 HOH HOH . C 3 HOH A 2 302 4 HOH HOH . C 3 HOH A 3 303 7 HOH HOH . C 3 HOH A 4 304 14 HOH HOH . C 3 HOH A 5 305 12 HOH HOH . C 3 HOH A 6 306 9 HOH HOH . C 3 HOH A 7 307 3 HOH HOH . C 3 HOH A 8 308 12 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 8 HOH HOH . C 3 HOH A 11 311 34 HOH HOH . C 3 HOH A 12 312 15 HOH HOH . C 3 HOH A 13 313 12 HOH HOH . C 3 HOH A 14 314 16 HOH HOH . C 3 HOH A 15 315 3 HOH HOH . C 3 HOH A 16 316 43 HOH HOH . C 3 HOH A 17 317 11 HOH HOH . C 3 HOH A 18 318 8 HOH HOH . C 3 HOH A 19 319 3 HOH HOH . C 3 HOH A 20 320 50 HOH HOH . C 3 HOH A 21 321 4 HOH HOH . C 3 HOH A 22 322 6 HOH HOH . C 3 HOH A 23 323 29 HOH HOH . C 3 HOH A 24 324 40 HOH HOH . C 3 HOH A 25 325 7 HOH HOH . C 3 HOH A 26 326 9 HOH HOH . C 3 HOH A 27 327 45 HOH HOH . C 3 HOH A 28 328 6 HOH HOH . C 3 HOH A 29 329 8 HOH HOH . C 3 HOH A 30 330 25 HOH HOH . C 3 HOH A 31 331 32 HOH HOH . C 3 HOH A 32 332 37 HOH HOH . C 3 HOH A 33 333 1 HOH HOH . C 3 HOH A 34 334 29 HOH HOH . C 3 HOH A 35 335 5 HOH HOH . C 3 HOH A 36 336 17 HOH HOH . C 3 HOH A 37 337 10 HOH HOH . C 3 HOH A 38 338 36 HOH HOH . C 3 HOH A 39 339 23 HOH HOH . C 3 HOH A 40 340 18 HOH HOH . C 3 HOH A 41 341 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 D7U . . . B 2 -11.846 -3.677 -2.21 1 36.88 ? C10 D7U 201 A 1 HETATM 2 C C13 D7U . . . B 2 -7.519 -7.128 -1.711 1 37.73 ? C13 D7U 201 A 1 HETATM 3 C C15 D7U . . . B 2 -5.977 -8.353 -0.336 1 45.41 ? C15 D7U 201 A 1 HETATM 4 C C17 D7U . . . B 2 -8.021 -7.772 0.56 1 49.53 ? C17 D7U 201 A 1 HETATM 5 C C20 D7U . . . B 2 -5.286 -7.715 -2.682 1 42.72 ? C20 D7U 201 A 1 HETATM 6 C C22 D7U . . . B 2 -4.56 -9.056 -5.235 1 50.18 ? C22 D7U 201 A 1 HETATM 7 C C26 D7U . . . B 2 -9.326 -7.227 5.193 1 72.81 ? C26 D7U 201 A 1 HETATM 8 C C28 D7U . . . B 2 -7.848 -5.546 4.34 1 76.49 ? C28 D7U 201 A 1 HETATM 9 N N1 D7U . . . B 2 -13.61 -6.992 0.468 1 42.25 ? N1 D7U 201 A 1 HETATM 10 C C2 D7U . . . B 2 -12.739 -7.911 0.865 1 43.81 ? C2 D7U 201 A 1 HETATM 11 C C3 D7U . . . B 2 -11.409 -7.814 0.466 1 44.13 ? C3 D7U 201 A 1 HETATM 12 N N4 D7U . . . B 2 -10.996 -6.762 -0.318 1 42.13 ? N4 D7U 201 A 1 HETATM 13 C C5 D7U . . . B 2 -11.875 -5.871 -0.708 1 40.67 ? C5 D7U 201 A 1 HETATM 14 C C6 D7U . . . B 2 -13.237 -5.985 -0.306 1 43.94 ? C6 D7U 201 A 1 HETATM 15 C C7 D7U . . . B 2 -9.756 -6.462 -0.825 1 35.86 ? C7 D7U 201 A 1 HETATM 16 C C8 D7U . . . B 2 -9.876 -5.301 -1.578 1 36.72 ? C8 D7U 201 A 1 HETATM 17 C C09 D7U . . . B 2 -11.218 -4.909 -1.533 1 41.5 ? C09 D7U 201 A 1 HETATM 18 O O11 D7U . . . B 2 -14.052 -5.191 -0.663 1 40.34 ? O11 D7U 201 A 1 HETATM 19 C C12 D7U . . . B 2 -8.408 -7.168 -0.646 1 40.29 ? C12 D7U 201 A 1 HETATM 20 C C14 D7U . . . B 2 -6.284 -7.726 -1.536 1 40.76 ? C14 D7U 201 A 1 HETATM 21 N N16 D7U . . . B 2 -6.844 -8.368 0.67 1 44.94 ? N16 D7U 201 A 1 HETATM 22 O O18 D7U . . . B 2 -8.933 -7.841 1.638 1 54.79 ? O18 D7U 201 A 1 HETATM 23 C C19 D7U . . . B 2 -8.747 -7.222 2.876 1 59.86 ? C19 D7U 201 A 1 HETATM 24 S S21 D7U . . . B 2 -5.685 -9.088 -3.807 1 53.11 ? S21 D7U 201 A 1 HETATM 25 O O23 D7U . . . B 2 -5.621 -10.35 -3.057 1 45.16 ? O23 D7U 201 A 1 HETATM 26 O O24 D7U . . . B 2 -7.085 -9.116 -4.262 1 41.81 ? O24 D7U 201 A 1 HETATM 27 C C25 D7U . . . B 2 -9.438 -7.78 3.931 1 64.01 ? C25 D7U 201 A 1 HETATM 28 C C27 D7U . . . B 2 -8.533 -6.109 5.399 1 80.44 ? C27 D7U 201 A 1 HETATM 29 C C29 D7U . . . B 2 -7.961 -6.103 3.079 1 69.52 ? C29 D7U 201 A 1 HETATM 30 F F30 D7U . . . B 2 -7.28 -5.533 2.053 1 89.9 ? F30 D7U 201 A 1 HETATM 31 F F31 D7U . . . B 2 -8.417 -5.562 6.646 1 90.61 ? F31 D7U 201 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 511 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #