data_6KEF # _model_server_result.job_id Ip6gSxd37JMMxJpp7kc1Gg _model_server_result.datetime_utc '2024-10-19 03:41:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6KEF # _exptl.entry_id 6KEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 409.458 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[3-(8-methyl-1-oxidanylidene-2H-pyrrolo[1,2-a]pyrazin-6-yl)-4-phenoxy-phenyl]methanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KEF _cell.length_a 34.052 _cell.length_b 47.382 _cell.length_c 78.294 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H19 N3 O4 S' _chem_comp.formula_weight 409.458 _chem_comp.id D7X _chem_comp.mon_nstd_flag . _chem_comp.name N-[3-(8-methyl-1-oxidanylidene-2H-pyrrolo[1,2-a]pyrazin-6-yl)-4-phenoxy-phenyl]methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 S20 D7X sing 83 n n O23 S20 D7X doub 84 n n O22 S20 D7X doub 85 n n S20 N19 D7X sing 86 n n N19 C14 D7X sing 87 n n C10 C9 D7X sing 88 n n C13 C14 D7X doub 89 n y C13 C12 D7X sing 90 n y C14 C15 D7X sing 91 n y C8 C9 D7X sing 92 n y C8 C7 D7X doub 93 n y C9 C5 D7X doub 94 n y C7 C12 D7X sing 95 n n C7 N4 D7X sing 96 n y C12 C17 D7X doub 97 n y C15 C16 D7X doub 98 n y C5 N4 D7X sing 99 n y C5 C6 D7X sing 100 n n O11 C6 D7X doub 101 n n N4 C3 D7X sing 102 n n C6 N1 D7X sing 103 n n C17 C16 D7X sing 104 n y C17 O18 D7X sing 105 n n C3 C2 D7X doub 106 n n N1 C2 D7X sing 107 n n O18 C24 D7X sing 108 n n C24 C29 D7X doub 109 n y C24 C25 D7X sing 110 n y C29 C28 D7X sing 111 n y C25 C26 D7X doub 112 n y C28 C27 D7X doub 113 n y C26 C27 D7X sing 114 n y C10 H1 D7X sing 115 n n C10 H2 D7X sing 116 n n C10 H3 D7X sing 117 n n C13 H4 D7X sing 118 n n C15 H5 D7X sing 119 n n C21 H6 D7X sing 120 n n C21 H7 D7X sing 121 n n C21 H8 D7X sing 122 n n C26 H9 D7X sing 123 n n C28 H10 D7X sing 124 n n C2 H11 D7X sing 125 n n C3 H12 D7X sing 126 n n C8 H14 D7X sing 127 n n C16 H15 D7X sing 128 n n N19 H16 D7X sing 129 n n C25 H17 D7X sing 130 n n C27 H18 D7X sing 131 n n C29 H19 D7X sing 132 n n N1 H20 D7X sing 133 n n # _atom_sites.entry_id 6KEF _atom_sites.fract_transf_matrix[1][1] 0.029367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D7X A 1 201 1 D7X LIG . C 3 HOH A 1 301 4 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 6 HOH HOH . C 3 HOH A 4 304 18 HOH HOH . C 3 HOH A 5 305 13 HOH HOH . C 3 HOH A 6 306 8 HOH HOH . C 3 HOH A 7 307 52 HOH HOH . C 3 HOH A 8 308 27 HOH HOH . C 3 HOH A 9 309 46 HOH HOH . C 3 HOH A 10 310 42 HOH HOH . C 3 HOH A 11 311 33 HOH HOH . C 3 HOH A 12 312 8 HOH HOH . C 3 HOH A 13 313 9 HOH HOH . C 3 HOH A 14 314 54 HOH HOH . C 3 HOH A 15 315 17 HOH HOH . C 3 HOH A 16 316 18 HOH HOH . C 3 HOH A 17 317 15 HOH HOH . C 3 HOH A 18 318 29 HOH HOH . C 3 HOH A 19 319 30 HOH HOH . C 3 HOH A 20 320 7 HOH HOH . C 3 HOH A 21 321 2 HOH HOH . C 3 HOH A 22 322 19 HOH HOH . C 3 HOH A 23 323 10 HOH HOH . C 3 HOH A 24 324 39 HOH HOH . C 3 HOH A 25 325 45 HOH HOH . C 3 HOH A 26 326 11 HOH HOH . C 3 HOH A 27 327 38 HOH HOH . C 3 HOH A 28 328 29 HOH HOH . C 3 HOH A 29 329 23 HOH HOH . C 3 HOH A 30 330 3 HOH HOH . C 3 HOH A 31 331 21 HOH HOH . C 3 HOH A 32 332 12 HOH HOH . C 3 HOH A 33 333 19 HOH HOH . C 3 HOH A 34 334 25 HOH HOH . C 3 HOH A 35 335 53 HOH HOH . C 3 HOH A 36 336 61 HOH HOH . C 3 HOH A 37 337 20 HOH HOH . C 3 HOH A 38 338 32 HOH HOH . C 3 HOH A 39 339 15 HOH HOH . C 3 HOH A 40 340 37 HOH HOH . C 3 HOH A 41 341 20 HOH HOH . C 3 HOH A 42 342 39 HOH HOH . C 3 HOH A 43 343 67 HOH HOH . C 3 HOH A 44 344 40 HOH HOH . C 3 HOH A 45 345 13 HOH HOH . C 3 HOH A 46 346 65 HOH HOH . C 3 HOH A 47 347 57 HOH HOH . C 3 HOH A 48 348 14 HOH HOH . C 3 HOH A 49 349 69 HOH HOH . C 3 HOH A 50 350 68 HOH HOH . C 3 HOH A 51 351 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 D7X . . . B 2 -11.541 -3.547 -1.932 1 34.96 ? C10 D7X 201 A 1 HETATM 2 C C13 D7X . . . B 2 -7.387 -7.252 -1.647 1 35.15 ? C13 D7X 201 A 1 HETATM 3 C C15 D7X . . . B 2 -5.741 -8.511 -0.421 1 40.43 ? C15 D7X 201 A 1 HETATM 4 C C17 D7X . . . B 2 -7.681 -7.744 0.694 1 45.68 ? C17 D7X 201 A 1 HETATM 5 C C21 D7X . . . B 2 -4.814 -9.057 -5.399 1 52.66 ? C21 D7X 201 A 1 HETATM 6 C C24 D7X . . . B 2 -8.172 -6.868 2.931 1 51.2 ? C24 D7X 201 A 1 HETATM 7 C C26 D7X . . . B 2 -8.968 -6.048 5.046 1 50.76 ? C26 D7X 201 A 1 HETATM 8 C C28 D7X . . . B 2 -6.864 -5.282 4.142 1 55.84 ? C28 D7X 201 A 1 HETATM 9 N N1 D7X . . . B 2 -13.31 -6.747 0.817 1 28.82 ? N1 D7X 201 A 1 HETATM 10 C C2 D7X . . . B 2 -12.428 -7.679 1.214 1 43.22 ? C2 D7X 201 A 1 HETATM 11 C C3 D7X . . . B 2 -11.101 -7.675 0.797 1 26.05 ? C3 D7X 201 A 1 HETATM 12 N N4 D7X . . . B 2 -10.708 -6.67 -0.051 1 40.09 ? N4 D7X 201 A 1 HETATM 13 C C5 D7X . . . B 2 -11.568 -5.738 -0.417 1 48.16 ? C5 D7X 201 A 1 HETATM 14 C C6 D7X . . . B 2 -12.913 -5.77 0.029 1 39.61 ? C6 D7X 201 A 1 HETATM 15 C C7 D7X . . . B 2 -9.478 -6.404 -0.619 1 43.86 ? C7 D7X 201 A 1 HETATM 16 C C8 D7X . . . B 2 -9.597 -5.241 -1.389 1 49.85 ? C8 D7X 201 A 1 HETATM 17 C C9 D7X . . . B 2 -10.918 -4.79 -1.273 1 42.73 ? C9 D7X 201 A 1 HETATM 18 O O11 D7X . . . B 2 -13.671 -4.91 -0.287 1 36.2 ? O11 D7X 201 A 1 HETATM 19 C C12 D7X . . . B 2 -8.152 -7.168 -0.503 1 29.41 ? C12 D7X 201 A 1 HETATM 20 C C14 D7X . . . B 2 -6.183 -7.927 -1.602 1 45.17 ? C14 D7X 201 A 1 HETATM 21 C C16 D7X . . . B 2 -6.487 -8.436 0.731 1 34.93 ? C16 D7X 201 A 1 HETATM 22 O O18 D7X . . . B 2 -8.447 -7.731 1.865 1 49.47 ? O18 D7X 201 A 1 HETATM 23 N N19 D7X . . . B 2 -5.343 -8.026 -2.782 1 50.35 ? N19 D7X 201 A 1 HETATM 24 S S20 D7X . . . B 2 -6.001 -8.203 -4.338 1 43.96 ? S20 D7X 201 A 1 HETATM 25 O O22 D7X . . . B 2 -7.31 -8.843 -4.347 1 42.19 ? O22 D7X 201 A 1 HETATM 26 O O23 D7X . . . B 2 -6.346 -6.885 -4.87 1 54.1 ? O23 D7X 201 A 1 HETATM 27 C C25 D7X . . . B 2 -9.127 -6.853 3.934 1 43.94 ? C25 D7X 201 A 1 HETATM 28 C C27 D7X . . . B 2 -7.828 -5.267 5.145 1 57.83 ? C27 D7X 201 A 1 HETATM 29 C C29 D7X . . . B 2 -7.031 -6.087 3.022 1 47.52 ? C29 D7X 201 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #