data_6KER # _model_server_result.job_id VpyklCXcYvd3LOJueoigag _model_server_result.datetime_utc '2024-10-11 21:44:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ker # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6KER # _exptl.entry_id 6KER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KER _cell.length_a 58.371 _cell.length_b 74.834 _cell.length_c 107.423 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KER _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 6KER _atom_sites.fract_transf_matrix[1][1] 0.017132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GSH AA 1 301 301 GSH GSH . D 2 GSH BA 1 301 301 GSH GSH . E 3 HOH AA 1 401 98 HOH HOH . E 3 HOH AA 2 402 232 HOH HOH . E 3 HOH AA 3 403 210 HOH HOH . E 3 HOH AA 4 404 30 HOH HOH . E 3 HOH AA 5 405 95 HOH HOH . E 3 HOH AA 6 406 47 HOH HOH . E 3 HOH AA 7 407 69 HOH HOH . E 3 HOH AA 8 408 108 HOH HOH . E 3 HOH AA 9 409 7 HOH HOH . E 3 HOH AA 10 410 132 HOH HOH . E 3 HOH AA 11 411 170 HOH HOH . E 3 HOH AA 12 412 149 HOH HOH . E 3 HOH AA 13 413 84 HOH HOH . E 3 HOH AA 14 414 31 HOH HOH . E 3 HOH AA 15 415 32 HOH HOH . E 3 HOH AA 16 416 36 HOH HOH . E 3 HOH AA 17 417 8 HOH HOH . E 3 HOH AA 18 418 116 HOH HOH . E 3 HOH AA 19 419 43 HOH HOH . E 3 HOH AA 20 420 227 HOH HOH . E 3 HOH AA 21 421 72 HOH HOH . E 3 HOH AA 22 422 191 HOH HOH . E 3 HOH AA 23 423 16 HOH HOH . E 3 HOH AA 24 424 19 HOH HOH . E 3 HOH AA 25 425 49 HOH HOH . E 3 HOH AA 26 426 90 HOH HOH . E 3 HOH AA 27 427 184 HOH HOH . E 3 HOH AA 28 428 9 HOH HOH . E 3 HOH AA 29 429 89 HOH HOH . E 3 HOH AA 30 430 85 HOH HOH . E 3 HOH AA 31 431 225 HOH HOH . E 3 HOH AA 32 432 71 HOH HOH . E 3 HOH AA 33 433 114 HOH HOH . E 3 HOH AA 34 434 159 HOH HOH . E 3 HOH AA 35 435 57 HOH HOH . E 3 HOH AA 36 436 60 HOH HOH . E 3 HOH AA 37 437 77 HOH HOH . E 3 HOH AA 38 438 127 HOH HOH . E 3 HOH AA 39 439 237 HOH HOH . E 3 HOH AA 40 440 13 HOH HOH . E 3 HOH AA 41 441 93 HOH HOH . E 3 HOH AA 42 442 27 HOH HOH . E 3 HOH AA 43 443 3 HOH HOH . E 3 HOH AA 44 444 4 HOH HOH . E 3 HOH AA 45 445 99 HOH HOH . E 3 HOH AA 46 446 33 HOH HOH . E 3 HOH AA 47 447 20 HOH HOH . E 3 HOH AA 48 448 59 HOH HOH . E 3 HOH AA 49 449 18 HOH HOH . E 3 HOH AA 50 450 66 HOH HOH . E 3 HOH AA 51 451 70 HOH HOH . E 3 HOH AA 52 452 82 HOH HOH . E 3 HOH AA 53 453 10 HOH HOH . E 3 HOH AA 54 454 96 HOH HOH . E 3 HOH AA 55 455 181 HOH HOH . E 3 HOH AA 56 456 209 HOH HOH . E 3 HOH AA 57 457 35 HOH HOH . E 3 HOH AA 58 458 190 HOH HOH . E 3 HOH AA 59 459 137 HOH HOH . E 3 HOH AA 60 460 39 HOH HOH . E 3 HOH AA 61 461 105 HOH HOH . E 3 HOH AA 62 462 61 HOH HOH . E 3 HOH AA 63 463 230 HOH HOH . E 3 HOH AA 64 464 94 HOH HOH . E 3 HOH AA 65 465 226 HOH HOH . E 3 HOH AA 66 466 83 HOH HOH . E 3 HOH AA 67 467 236 HOH HOH . E 3 HOH AA 68 468 126 HOH HOH . E 3 HOH AA 69 469 180 HOH HOH . E 3 HOH AA 70 470 101 HOH HOH . E 3 HOH AA 71 471 86 HOH HOH . E 3 HOH AA 72 472 228 HOH HOH . E 3 HOH AA 73 473 204 HOH HOH . E 3 HOH AA 74 474 205 HOH HOH . E 3 HOH AA 75 475 17 HOH HOH . E 3 HOH AA 76 476 110 HOH HOH . E 3 HOH AA 77 477 102 HOH HOH . E 3 HOH AA 78 478 238 HOH HOH . E 3 HOH AA 79 479 213 HOH HOH . E 3 HOH AA 80 480 196 HOH HOH . E 3 HOH AA 81 481 235 HOH HOH . E 3 HOH AA 82 482 87 HOH HOH . E 3 HOH AA 83 483 129 HOH HOH . E 3 HOH AA 84 484 121 HOH HOH . F 3 HOH BA 1 401 78 HOH HOH . F 3 HOH BA 2 402 58 HOH HOH . F 3 HOH BA 3 403 75 HOH HOH . F 3 HOH BA 4 404 14 HOH HOH . F 3 HOH BA 5 405 174 HOH HOH . F 3 HOH BA 6 406 231 HOH HOH . F 3 HOH BA 7 407 92 HOH HOH . F 3 HOH BA 8 408 24 HOH HOH . F 3 HOH BA 9 409 88 HOH HOH . F 3 HOH BA 10 410 122 HOH HOH . F 3 HOH BA 11 411 53 HOH HOH . F 3 HOH BA 12 412 112 HOH HOH . F 3 HOH BA 13 413 23 HOH HOH . F 3 HOH BA 14 414 229 HOH HOH . F 3 HOH BA 15 415 29 HOH HOH . F 3 HOH BA 16 416 38 HOH HOH . F 3 HOH BA 17 417 26 HOH HOH . F 3 HOH BA 18 418 130 HOH HOH . F 3 HOH BA 19 419 73 HOH HOH . F 3 HOH BA 20 420 74 HOH HOH . F 3 HOH BA 21 421 138 HOH HOH . F 3 HOH BA 22 422 46 HOH HOH . F 3 HOH BA 23 423 80 HOH HOH . F 3 HOH BA 24 424 67 HOH HOH . F 3 HOH BA 25 425 12 HOH HOH . F 3 HOH BA 26 426 156 HOH HOH . F 3 HOH BA 27 427 143 HOH HOH . F 3 HOH BA 28 428 37 HOH HOH . F 3 HOH BA 29 429 62 HOH HOH . F 3 HOH BA 30 430 168 HOH HOH . F 3 HOH BA 31 431 125 HOH HOH . F 3 HOH BA 32 432 81 HOH HOH . F 3 HOH BA 33 433 76 HOH HOH . F 3 HOH BA 34 434 34 HOH HOH . F 3 HOH BA 35 435 41 HOH HOH . F 3 HOH BA 36 436 189 HOH HOH . F 3 HOH BA 37 437 120 HOH HOH . F 3 HOH BA 38 438 56 HOH HOH . F 3 HOH BA 39 439 40 HOH HOH . F 3 HOH BA 40 440 220 HOH HOH . F 3 HOH BA 41 441 5 HOH HOH . F 3 HOH BA 42 442 6 HOH HOH . F 3 HOH BA 43 443 163 HOH HOH . F 3 HOH BA 44 444 11 HOH HOH . F 3 HOH BA 45 445 234 HOH HOH . F 3 HOH BA 46 446 68 HOH HOH . F 3 HOH BA 47 447 201 HOH HOH . F 3 HOH BA 48 448 148 HOH HOH . F 3 HOH BA 49 449 119 HOH HOH . F 3 HOH BA 50 450 161 HOH HOH . F 3 HOH BA 51 451 103 HOH HOH . F 3 HOH BA 52 452 25 HOH HOH . F 3 HOH BA 53 453 233 HOH HOH . F 3 HOH BA 54 454 239 HOH HOH . F 3 HOH BA 55 455 224 HOH HOH . F 3 HOH BA 56 456 171 HOH HOH . F 3 HOH BA 57 457 65 HOH HOH . F 3 HOH BA 58 458 188 HOH HOH . F 3 HOH BA 59 459 64 HOH HOH . F 3 HOH BA 60 460 123 HOH HOH . F 3 HOH BA 61 461 212 HOH HOH . F 3 HOH BA 62 462 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . D 2 -21.152 -2.78 -15.314 1 16.34 ? N1 GSH 301 BA 1 HETATM 2 C CA1 GSH . . . D 2 -21.985 -3.333 -16.331 1 15.74 ? CA1 GSH 301 BA 1 HETATM 3 C C1 GSH . . . D 2 -23.102 -4.179 -15.675 1 13.25 ? C1 GSH 301 BA 1 HETATM 4 O O11 GSH . . . D 2 -24.187 -4.387 -16.289 1 13.31 ? O11 GSH 301 BA 1 HETATM 5 O O12 GSH . . . D 2 -22.93 -4.662 -14.52 1 15.53 ? O12 GSH 301 BA 1 HETATM 6 C CB1 GSH . . . D 2 -21.122 -4.233 -17.238 1 15.52 ? CB1 GSH 301 BA 1 HETATM 7 C CG1 GSH . . . D 2 -21.96 -4.621 -18.49 1 16.02 ? CG1 GSH 301 BA 1 HETATM 8 C CD1 GSH . . . D 2 -21.039 -5.231 -19.574 1 18.12 ? CD1 GSH 301 BA 1 HETATM 9 O OE1 GSH . . . D 2 -19.93 -4.808 -19.729 1 17.97 ? OE1 GSH 301 BA 1 HETATM 10 N N2 GSH . . . D 2 -21.557 -6.329 -20.406 1 16.3 ? N2 GSH 301 BA 1 HETATM 11 C CA2 GSH . . . D 2 -20.728 -6.914 -21.44 1 16.45 ? CA2 GSH 301 BA 1 HETATM 12 C C2 GSH . . . D 2 -21.238 -6.389 -22.787 1 17.62 ? C2 GSH 301 BA 1 HETATM 13 O O2 GSH . . . D 2 -22.402 -6.203 -22.968 1 16.5 ? O2 GSH 301 BA 1 HETATM 14 C CB2 GSH . . . D 2 -20.888 -8.418 -21.444 1 15.72 ? CB2 GSH 301 BA 1 HETATM 15 S SG2 GSH . . . D 2 -20.129 -9.121 -19.972 1 20.01 ? SG2 GSH 301 BA 1 HETATM 16 N N3 GSH . . . D 2 -20.289 -6.121 -23.859 1 19.34 ? N3 GSH 301 BA 1 HETATM 17 C CA3 GSH . . . D 2 -20.785 -5.636 -25.13 1 17.58 ? CA3 GSH 301 BA 1 HETATM 18 C C3 GSH . . . D 2 -20.02 -4.406 -25.516 1 22.88 ? C3 GSH 301 BA 1 HETATM 19 O O31 GSH . . . D 2 -20.042 -4.011 -26.7 1 19.94 ? O31 GSH 301 BA 1 HETATM 20 O O32 GSH . . . D 2 -19.371 -3.777 -24.648 1 24.69 ? O32 GSH 301 BA 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #