data_6KEZ # _model_server_result.job_id c_JR6yf3awkYYVNa3Ah_WQ _model_server_result.datetime_utc '2025-04-04 12:06:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kez # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":401}' # _entry.id 6KEZ # _exptl.entry_id 6KEZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.88 _cell.angle_gamma 90 _cell.entry_id 6KEZ _cell.length_a 92.813 _cell.length_b 204.734 _cell.length_c 157.036 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KEZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 author_and_software_defined_assembly 1 PISA octameric 8 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,O,P,Q,R,S,T,Y,Z,AA,BA,GA,HA 1 1 E,F,G,H,K,L,M,N,U,V,W,X,CA,DA,EA,FA,IA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 I SG CYS 18 I CYS 17 1_555 I SG CYS 57 I CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 I SG CYS 246 I CYS 245 1_555 I SG CYS 252 I CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 J SG CYS 18 K CYS 17 1_555 J SG CYS 57 K CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 K SG CYS 18 J CYS 17 1_555 K SG CYS 57 J CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf5 K SG CYS 246 J CYS 245 1_555 K SG CYS 252 J CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 L SG CYS 18 L CYS 17 1_555 L SG CYS 57 L CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 L SG CYS 246 L CYS 245 1_555 L SG CYS 252 L CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 M SG CYS 24 M CYS 22 1_555 M SG CYS 33 M CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 M SG CYS 66 M CYS 64 1_555 M SG CYS 75 M CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf10 N SG CYS 24 N CYS 22 1_555 N SG CYS 33 N CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 N SG CYS 66 N CYS 64 1_555 N SG CYS 75 N CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 O SG CYS 24 O CYS 22 1_555 O SG CYS 33 O CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 O SG CYS 66 O CYS 64 1_555 O SG CYS 75 O CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 P SG CYS 24 P CYS 22 1_555 P SG CYS 33 P CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf15 P SG CYS 66 P CYS 64 1_555 P SG CYS 75 P CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 6KEZ _atom_sites.fract_transf_matrix[1][1] 0.010774 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003269 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 4 NAD A 1 401 1 NAD NAD . R 4 NAD B 1 401 4 NAD NAD . S 4 NAD C 1 401 3 NAD NAD . T 4 NAD D 1 401 5 NAD NAD . U 4 NAD E 1 401 6 NAD NAD . V 4 NAD F 1 401 7 NAD NAD . W 4 NAD G 1 401 8 NAD NAD . X 4 NAD H 1 401 9 NAD NAD . Y 5 HOH A 1 501 27 HOH HOH . Y 5 HOH A 2 502 36 HOH HOH . Z 5 HOH B 1 501 7 HOH HOH . Z 5 HOH B 2 502 28 HOH HOH . Z 5 HOH B 3 503 18 HOH HOH . Z 5 HOH B 4 504 34 HOH HOH . Z 5 HOH B 5 505 5 HOH HOH . Z 5 HOH B 6 506 20 HOH HOH . Z 5 HOH B 7 507 26 HOH HOH . Z 5 HOH B 8 508 21 HOH HOH . Z 5 HOH B 9 509 29 HOH HOH . AA 5 HOH C 1 501 10 HOH HOH . AA 5 HOH C 2 502 23 HOH HOH . AA 5 HOH C 3 503 35 HOH HOH . AA 5 HOH C 4 504 30 HOH HOH . AA 5 HOH C 5 505 32 HOH HOH . AA 5 HOH C 6 506 33 HOH HOH . AA 5 HOH C 7 507 22 HOH HOH . BA 5 HOH D 1 501 1 HOH HOH . CA 5 HOH E 1 501 17 HOH HOH . CA 5 HOH E 2 502 11 HOH HOH . CA 5 HOH E 3 503 16 HOH HOH . CA 5 HOH E 4 504 25 HOH HOH . DA 5 HOH F 1 501 9 HOH HOH . DA 5 HOH F 2 502 12 HOH HOH . EA 5 HOH G 1 501 31 HOH HOH . EA 5 HOH G 2 502 4 HOH HOH . EA 5 HOH G 3 503 2 HOH HOH . EA 5 HOH G 4 504 24 HOH HOH . EA 5 HOH G 5 505 14 HOH HOH . EA 5 HOH G 6 506 3 HOH HOH . FA 5 HOH H 1 501 38 HOH HOH . FA 5 HOH H 2 502 13 HOH HOH . GA 5 HOH I 1 401 15 HOH HOH . HA 5 HOH K 1 401 37 HOH HOH . IA 5 HOH N 1 101 8 HOH HOH . IA 5 HOH N 2 102 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . S 4 79.17 -379.893 359.207 1 46.58 ? PA NAD 401 C 1 HETATM 2 O O1A NAD . . . S 4 78.547 -378.608 358.717 1 40.56 ? O1A NAD 401 C 1 HETATM 3 O O2A NAD . . . S 4 78.394 -381.186 359.145 1 30.7 ? O2A NAD 401 C 1 HETATM 4 O O5B NAD . . . S 4 80.495 -380.145 358.59 1 41.53 ? O5B NAD 401 C 1 HETATM 5 C C5B NAD . . . S 4 80.594 -380.595 357.321 1 30.7 ? C5B NAD 401 C 1 HETATM 6 C C4B NAD . . . S 4 81.778 -379.803 356.863 1 30.7 ? C4B NAD 401 C 1 HETATM 7 O O4B NAD . . . S 4 82.932 -380.51 357.167 1 30.7 ? O4B NAD 401 C 1 HETATM 8 C C3B NAD . . . S 4 81.656 -379.796 355.394 1 32.46 ? C3B NAD 401 C 1 HETATM 9 O O3B NAD . . . S 4 82.321 -378.676 354.874 1 44.04 ? O3B NAD 401 C 1 HETATM 10 C C2B NAD . . . S 4 82.491 -380.962 355.137 1 33.56 ? C2B NAD 401 C 1 HETATM 11 O O2B NAD . . . S 4 82.625 -381.067 353.728 1 47.34 ? O2B NAD 401 C 1 HETATM 12 C C1B NAD . . . S 4 83.668 -380.694 356.018 1 30.7 ? C1B NAD 401 C 1 HETATM 13 N N9A NAD . . . S 4 84.427 -381.891 356.271 1 30.7 ? N9A NAD 401 C 1 HETATM 14 C C8A NAD . . . S 4 83.892 -383.011 356.638 1 33.4 ? C8A NAD 401 C 1 HETATM 15 N N7A NAD . . . S 4 84.822 -383.942 356.776 1 30.7 ? N7A NAD 401 C 1 HETATM 16 C C5A NAD . . . S 4 85.96 -383.408 356.507 1 31.11 ? C5A NAD 401 C 1 HETATM 17 C C6A NAD . . . S 4 87.322 -383.827 356.456 1 32.02 ? C6A NAD 401 C 1 HETATM 18 N N6A NAD . . . S 4 87.722 -385.029 356.746 1 31.8 ? N6A NAD 401 C 1 HETATM 19 N N1A NAD . . . S 4 88.216 -382.979 356.109 1 39.16 ? N1A NAD 401 C 1 HETATM 20 C C2A NAD . . . S 4 87.912 -381.74 355.813 1 43.44 ? C2A NAD 401 C 1 HETATM 21 N N3A NAD . . . S 4 86.69 -381.299 355.844 1 43.33 ? N3A NAD 401 C 1 HETATM 22 C C4A NAD . . . S 4 85.697 -382.068 356.169 1 35.98 ? C4A NAD 401 C 1 HETATM 23 O O3 NAD . . . S 4 79.67 -379.681 360.717 1 31.19 ? O3 NAD 401 C 1 HETATM 24 P PN NAD . . . S 4 78.854 -378.723 361.713 1 30.7 ? PN NAD 401 C 1 HETATM 25 O O1N NAD . . . S 4 79.272 -377.477 361.351 1 30.7 ? O1N NAD 401 C 1 HETATM 26 O O2N NAD . . . S 4 77.572 -379.164 361.526 1 33.16 ? O2N NAD 401 C 1 HETATM 27 O O5D NAD . . . S 4 79.365 -379.105 363.036 1 30.7 ? O5D NAD 401 C 1 HETATM 28 C C5D NAD . . . S 4 80.711 -379.086 363.238 1 30.7 ? C5D NAD 401 C 1 HETATM 29 C C4D NAD . . . S 4 81.044 -379.539 364.635 1 30.7 ? C4D NAD 401 C 1 HETATM 30 O O4D NAD . . . S 4 80.379 -378.74 365.501 1 30.7 ? O4D NAD 401 C 1 HETATM 31 C C3D NAD . . . S 4 80.496 -380.801 365.056 1 33.23 ? C3D NAD 401 C 1 HETATM 32 O O3D NAD . . . S 4 81.663 -381.096 365.701 1 36.52 ? O3D NAD 401 C 1 HETATM 33 C C2D NAD . . . S 4 79.437 -380.521 366.045 1 30.7 ? C2D NAD 401 C 1 HETATM 34 O O2D NAD . . . S 4 79.433 -381.394 367.124 1 32.2 ? O2D NAD 401 C 1 HETATM 35 C C1D NAD . . . S 4 79.893 -379.306 366.642 1 30.7 ? C1D NAD 401 C 1 HETATM 36 N N1N NAD . . . S 4 78.85 -378.397 366.873 1 30.7 ? N1N NAD 401 C 1 HETATM 37 C C2N NAD . . . S 4 77.779 -378.394 366.118 1 30.7 ? C2N NAD 401 C 1 HETATM 38 C C3N NAD . . . S 4 76.798 -377.454 366.285 1 30.7 ? C3N NAD 401 C 1 HETATM 39 C C7N NAD . . . S 4 75.556 -377.426 365.514 1 30.7 ? C7N NAD 401 C 1 HETATM 40 O O7N NAD . . . S 4 75.317 -376.588 364.759 1 30.7 ? O7N NAD 401 C 1 HETATM 41 N N7N NAD . . . S 4 74.689 -378.356 365.609 1 32.61 ? N7N NAD 401 C 1 HETATM 42 C C4N NAD . . . S 4 76.95 -376.548 367.246 1 32.94 ? C4N NAD 401 C 1 HETATM 43 C C5N NAD . . . S 4 78.093 -376.552 368.005 1 30.7 ? C5N NAD 401 C 1 HETATM 44 C C6N NAD . . . S 4 79.044 -377.49 367.763 1 30.7 ? C6N NAD 401 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #