data_6KFB # _model_server_result.job_id GN9DLPEa5S36ijDlXP55vg _model_server_result.datetime_utc '2024-11-24 09:29:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6KFB # _exptl.entry_id 6KFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.082 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'THIOCYANATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6KFB _cell.length_a 58.095 _cell.length_b 58.095 _cell.length_c 225.955 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -29.0475 -50.311746 -37.659167 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 202 NAG 2 n B FUC 2 B 2 FUC A 203 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 108 A CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf2 A SG CYS 35 A CYS 35 1_555 A SG CYS 152 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 A SG CYS 80 A CYS 80 1_555 A SG CYS 158 A CYS 158 10_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? disulf ? disulf4 A SG CYS 104 A CYS 104 1_555 A SG CYS 118 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? covale ? covale1 A ND2 ASN 123 A ASN 123 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C N S -1' _chem_comp.formula_weight 58.082 _chem_comp.id SCN _chem_comp.mon_nstd_flag . _chem_comp.name 'THIOCYANATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C SCN sing 330 n n C N SCN trip 331 n n # _atom_sites.entry_id 6KFB _atom_sites.fract_transf_matrix[1][1] 0.017213 _atom_sites.fract_transf_matrix[1][2] 0.009938 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SCN A 1 201 201 SCN SCN . D 4 HOH A 1 301 301 HOH HOH . D 4 HOH A 2 302 302 HOH HOH . D 4 HOH A 3 303 303 HOH HOH . D 4 HOH A 4 304 304 HOH HOH . D 4 HOH A 5 305 305 HOH HOH . D 4 HOH A 6 306 306 HOH HOH . D 4 HOH A 7 307 307 HOH HOH . D 4 HOH A 8 308 308 HOH HOH . D 4 HOH A 9 309 309 HOH HOH . D 4 HOH A 10 310 310 HOH HOH . D 4 HOH A 11 311 311 HOH HOH . D 4 HOH A 12 312 312 HOH HOH . D 4 HOH A 13 313 313 HOH HOH . D 4 HOH A 14 314 314 HOH HOH . D 4 HOH A 15 315 315 HOH HOH . D 4 HOH A 16 316 316 HOH HOH . D 4 HOH A 17 317 317 HOH HOH . D 4 HOH A 18 318 318 HOH HOH . D 4 HOH A 19 319 319 HOH HOH . D 4 HOH A 20 320 320 HOH HOH . D 4 HOH A 21 321 321 HOH HOH . D 4 HOH A 22 322 322 HOH HOH . D 4 HOH A 23 323 323 HOH HOH . D 4 HOH A 24 324 324 HOH HOH . D 4 HOH A 25 325 325 HOH HOH . D 4 HOH A 26 326 326 HOH HOH . D 4 HOH A 27 327 327 HOH HOH . D 4 HOH A 28 328 328 HOH HOH . D 4 HOH A 29 329 329 HOH HOH . D 4 HOH A 30 330 330 HOH HOH . D 4 HOH A 31 331 331 HOH HOH . D 4 HOH A 32 332 332 HOH HOH . D 4 HOH A 33 333 333 HOH HOH . D 4 HOH A 34 334 334 HOH HOH . D 4 HOH A 35 335 335 HOH HOH . D 4 HOH A 36 336 336 HOH HOH . D 4 HOH A 37 337 337 HOH HOH . D 4 HOH A 38 338 338 HOH HOH . D 4 HOH A 39 339 339 HOH HOH . D 4 HOH A 40 340 340 HOH HOH . D 4 HOH A 41 341 341 HOH HOH . D 4 HOH A 42 342 342 HOH HOH . D 4 HOH A 43 343 343 HOH HOH . D 4 HOH A 44 344 344 HOH HOH . D 4 HOH A 45 345 345 HOH HOH . D 4 HOH A 46 346 346 HOH HOH . D 4 HOH A 47 347 347 HOH HOH . D 4 HOH A 48 348 348 HOH HOH . D 4 HOH A 49 349 349 HOH HOH . D 4 HOH A 50 350 350 HOH HOH . D 4 HOH A 51 351 351 HOH HOH . D 4 HOH A 52 352 352 HOH HOH . D 4 HOH A 53 353 353 HOH HOH . D 4 HOH A 54 354 354 HOH HOH . D 4 HOH A 55 355 355 HOH HOH . D 4 HOH A 56 356 356 HOH HOH . D 4 HOH A 57 357 357 HOH HOH . D 4 HOH A 58 358 358 HOH HOH . D 4 HOH A 59 359 359 HOH HOH . D 4 HOH A 60 360 360 HOH HOH . D 4 HOH A 61 361 361 HOH HOH . D 4 HOH A 62 362 362 HOH HOH . D 4 HOH A 63 363 363 HOH HOH . D 4 HOH A 64 364 364 HOH HOH . D 4 HOH A 65 365 365 HOH HOH . D 4 HOH A 66 366 366 HOH HOH . D 4 HOH A 67 367 367 HOH HOH . D 4 HOH A 68 368 368 HOH HOH . D 4 HOH A 69 369 369 HOH HOH . D 4 HOH A 70 370 370 HOH HOH . D 4 HOH A 71 371 371 HOH HOH . D 4 HOH A 72 372 372 HOH HOH . D 4 HOH A 73 373 373 HOH HOH . D 4 HOH A 74 374 374 HOH HOH . D 4 HOH A 75 375 375 HOH HOH . D 4 HOH A 76 376 376 HOH HOH . D 4 HOH A 77 377 377 HOH HOH . D 4 HOH A 78 378 378 HOH HOH . D 4 HOH A 79 379 379 HOH HOH . D 4 HOH A 80 380 380 HOH HOH . D 4 HOH A 81 381 381 HOH HOH . D 4 HOH A 82 382 382 HOH HOH . D 4 HOH A 83 383 383 HOH HOH . D 4 HOH A 84 384 384 HOH HOH . D 4 HOH A 85 385 385 HOH HOH . D 4 HOH A 86 386 386 HOH HOH . D 4 HOH A 87 387 387 HOH HOH . D 4 HOH A 88 388 388 HOH HOH . D 4 HOH A 89 389 389 HOH HOH . D 4 HOH A 90 390 390 HOH HOH . D 4 HOH A 91 391 391 HOH HOH . D 4 HOH A 92 392 392 HOH HOH . D 4 HOH A 93 393 393 HOH HOH . D 4 HOH A 94 394 394 HOH HOH . D 4 HOH A 95 395 395 HOH HOH . D 4 HOH A 96 396 396 HOH HOH . D 4 HOH A 97 397 397 HOH HOH . D 4 HOH A 98 398 398 HOH HOH . D 4 HOH A 99 399 399 HOH HOH . D 4 HOH A 100 400 400 HOH HOH . D 4 HOH A 101 401 401 HOH HOH . D 4 HOH A 102 402 402 HOH HOH . D 4 HOH A 103 403 403 HOH HOH . D 4 HOH A 104 404 404 HOH HOH . D 4 HOH A 105 405 405 HOH HOH . D 4 HOH A 106 406 406 HOH HOH . D 4 HOH A 107 407 407 HOH HOH . D 4 HOH A 108 408 408 HOH HOH . D 4 HOH A 109 409 409 HOH HOH . D 4 HOH A 110 410 410 HOH HOH . D 4 HOH A 111 411 411 HOH HOH . D 4 HOH A 112 412 412 HOH HOH . D 4 HOH A 113 413 413 HOH HOH . D 4 HOH A 114 414 414 HOH HOH . D 4 HOH A 115 415 415 HOH HOH . D 4 HOH A 116 416 416 HOH HOH . D 4 HOH A 117 417 417 HOH HOH . D 4 HOH A 118 418 419 HOH HOH . D 4 HOH A 119 419 418 HOH HOH . D 4 HOH A 120 420 420 HOH HOH . D 4 HOH A 121 421 421 HOH HOH . D 4 HOH A 122 422 422 HOH HOH . D 4 HOH A 123 423 423 HOH HOH . D 4 HOH A 124 424 424 HOH HOH . D 4 HOH A 125 425 425 HOH HOH . D 4 HOH A 126 426 426 HOH HOH . D 4 HOH A 127 427 427 HOH HOH . D 4 HOH A 128 428 428 HOH HOH . D 4 HOH A 129 429 429 HOH HOH . D 4 HOH A 130 430 430 HOH HOH . D 4 HOH A 131 431 431 HOH HOH . D 4 HOH A 132 432 432 HOH HOH . D 4 HOH A 133 433 433 HOH HOH . D 4 HOH A 134 434 434 HOH HOH . D 4 HOH A 135 435 435 HOH HOH . D 4 HOH A 136 436 436 HOH HOH . D 4 HOH A 137 437 437 HOH HOH . D 4 HOH A 138 438 438 HOH HOH . D 4 HOH A 139 439 439 HOH HOH . D 4 HOH A 140 440 440 HOH HOH . D 4 HOH A 141 441 441 HOH HOH . D 4 HOH A 142 442 442 HOH HOH . D 4 HOH A 143 443 443 HOH HOH . D 4 HOH A 144 444 444 HOH HOH . D 4 HOH A 145 445 445 HOH HOH . D 4 HOH A 146 446 446 HOH HOH . D 4 HOH A 147 447 447 HOH HOH . D 4 HOH A 148 448 448 HOH HOH . D 4 HOH A 149 449 449 HOH HOH . D 4 HOH A 150 450 450 HOH HOH . D 4 HOH A 151 451 451 HOH HOH . D 4 HOH A 152 452 452 HOH HOH . D 4 HOH A 153 453 453 HOH HOH . D 4 HOH A 154 454 454 HOH HOH . D 4 HOH A 155 455 455 HOH HOH . D 4 HOH A 156 456 456 HOH HOH . D 4 HOH A 157 457 457 HOH HOH . D 4 HOH A 158 458 458 HOH HOH . D 4 HOH A 159 459 459 HOH HOH . D 4 HOH A 160 460 460 HOH HOH . D 4 HOH A 161 461 461 HOH HOH . D 4 HOH A 162 462 462 HOH HOH . D 4 HOH A 163 463 463 HOH HOH . D 4 HOH A 164 464 464 HOH HOH . D 4 HOH A 165 465 465 HOH HOH . D 4 HOH A 166 466 466 HOH HOH . D 4 HOH A 167 467 467 HOH HOH . D 4 HOH A 168 468 468 HOH HOH . D 4 HOH A 169 469 469 HOH HOH . D 4 HOH A 170 470 470 HOH HOH . D 4 HOH A 171 471 471 HOH HOH . D 4 HOH A 172 472 472 HOH HOH . D 4 HOH A 173 473 473 HOH HOH . D 4 HOH A 174 474 474 HOH HOH . D 4 HOH A 175 475 475 HOH HOH . D 4 HOH A 176 476 476 HOH HOH . D 4 HOH A 177 477 477 HOH HOH . D 4 HOH A 178 478 478 HOH HOH . D 4 HOH A 179 479 479 HOH HOH . D 4 HOH A 180 480 480 HOH HOH . D 4 HOH A 181 481 481 HOH HOH . D 4 HOH A 182 482 482 HOH HOH . D 4 HOH A 183 483 483 HOH HOH . D 4 HOH A 184 484 484 HOH HOH . D 4 HOH A 185 485 485 HOH HOH . D 4 HOH A 186 486 486 HOH HOH . D 4 HOH A 187 487 487 HOH HOH . D 4 HOH A 188 488 488 HOH HOH . D 4 HOH A 189 489 489 HOH HOH . D 4 HOH A 190 490 490 HOH HOH . D 4 HOH A 191 491 491 HOH HOH . D 4 HOH A 192 492 492 HOH HOH . D 4 HOH A 193 493 493 HOH HOH . D 4 HOH A 194 494 494 HOH HOH . D 4 HOH A 195 495 495 HOH HOH . D 4 HOH A 196 496 496 HOH HOH . D 4 HOH A 197 497 497 HOH HOH . D 4 HOH A 198 498 498 HOH HOH . D 4 HOH A 199 499 499 HOH HOH . D 4 HOH A 200 500 500 HOH HOH . D 4 HOH A 201 501 501 HOH HOH . D 4 HOH A 202 502 502 HOH HOH . D 4 HOH A 203 503 503 HOH HOH . D 4 HOH A 204 504 504 HOH HOH . D 4 HOH A 205 505 505 HOH HOH . D 4 HOH A 206 506 506 HOH HOH . D 4 HOH A 207 507 507 HOH HOH . D 4 HOH A 208 508 508 HOH HOH . D 4 HOH A 209 509 509 HOH HOH . D 4 HOH A 210 510 510 HOH HOH . D 4 HOH A 211 511 511 HOH HOH . D 4 HOH A 212 512 512 HOH HOH . D 4 HOH A 213 513 513 HOH HOH . D 4 HOH A 214 514 514 HOH HOH . D 4 HOH A 215 515 515 HOH HOH . D 4 HOH A 216 516 516 HOH HOH . D 4 HOH A 217 517 517 HOH HOH . D 4 HOH A 218 518 518 HOH HOH . D 4 HOH A 219 519 519 HOH HOH . D 4 HOH A 220 520 520 HOH HOH . D 4 HOH A 221 521 521 HOH HOH . D 4 HOH A 222 522 522 HOH HOH . D 4 HOH A 223 523 523 HOH HOH . D 4 HOH A 224 524 524 HOH HOH . D 4 HOH A 225 525 525 HOH HOH . D 4 HOH A 226 526 526 HOH HOH . D 4 HOH A 227 527 527 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SCN . A . C 3 -6.503 -24.02 -5.969 0.55 29.39 ? S SCN 201 A 1 HETATM 2 S S SCN . B . C 3 -6.186 -27.403 -4.924 0.45 24.66 ? S SCN 201 A 1 HETATM 3 C C SCN . A . C 3 -7.451 -24.897 -4.884 0.55 28.06 ? C SCN 201 A 1 HETATM 4 C C SCN . B . C 3 -6.977 -25.953 -4.594 0.45 24.63 ? C SCN 201 A 1 HETATM 5 N N SCN . A . C 3 -8.107 -25.501 -4.141 0.55 27.51 ? N SCN 201 A 1 HETATM 6 N N SCN . B . C 3 -7.521 -24.952 -4.375 0.45 24.41 ? N SCN 201 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 6 #