data_6KFC
#
_model_server_result.job_id            R_44yt3aWOMyGRyAsK_eoA 
_model_server_result.datetime_utc      '2024-10-11 19:20:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kfc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":204}' 
#
_entry.id    6KFC 
#
_exptl.entry_id    6KFC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6KFC 
_cell.length_a            58.59 
_cell.length_b            58.59 
_cell.length_c            226.233 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KFC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -29.295 -50.740428 -37.7055 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   FUC 
_pdbx_entity_branch_link.comp_id_2                   NAG 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O6 
_pdbx_entity_branch_link.leaving_atom_id_2           HO6 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 202 NAG 
2 n B FUC 2 B 2 FUC A 203 FUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 108 A CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf2 A SG CYS 35 A CYS 35 1_555 A SG CYS 152 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf3 A SG CYS 80 A CYS 80 1_555 A SG CYS 158 A CYS 158 10_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
disulf ? disulf4 A SG CYS 104 A CYS 104 1_555 A SG CYS 118 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
covale ? covale1 A ND2 ASN 109 A ASN 109 1_555 D C1 NAG . A NAG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
covale ? covale2 A ND2 ASN 123 A ASN 123 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? 
covale ? covale3 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 261 n n 
C1 O1 NAG sing 262 n n 
C1 O5 NAG sing 263 n n 
C1 H1 NAG sing 264 n n 
C2 C3 NAG sing 265 n n 
C2 N2 NAG sing 266 n n 
C2 H2 NAG sing 267 n n 
C3 C4 NAG sing 268 n n 
C3 O3 NAG sing 269 n n 
C3 H3 NAG sing 270 n n 
C4 C5 NAG sing 271 n n 
C4 O4 NAG sing 272 n n 
C4 H4 NAG sing 273 n n 
C5 C6 NAG sing 274 n n 
C5 O5 NAG sing 275 n n 
C5 H5 NAG sing 276 n n 
C6 O6 NAG sing 277 n n 
C6 H61 NAG sing 278 n n 
C6 H62 NAG sing 279 n n 
C7 C8 NAG sing 280 n n 
C7 N2 NAG sing 281 n n 
C7 O7 NAG doub 282 n n 
C8 H81 NAG sing 283 n n 
C8 H82 NAG sing 284 n n 
C8 H83 NAG sing 285 n n 
N2 HN2 NAG sing 286 n n 
O1 HO1 NAG sing 287 n n 
O3 HO3 NAG sing 288 n n 
O4 HO4 NAG sing 289 n n 
O6 HO6 NAG sing 290 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6KFC 
_atom_sites.fract_transf_matrix[1][1]    0.017068 
_atom_sites.fract_transf_matrix[1][2]    0.009854 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019708 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00442 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CYN A 1 201 201 CYN CYN . 
D 4 NAG A 1 204 204 NAG NAG . 
E 5 HOH A 1 301 301 HOH HOH . 
E 5 HOH A 2 302 302 HOH HOH . 
E 5 HOH A 3 303 303 HOH HOH . 
E 5 HOH A 4 304 304 HOH HOH . 
E 5 HOH A 5 305 305 HOH HOH . 
E 5 HOH A 6 306 306 HOH HOH . 
E 5 HOH A 7 307 307 HOH HOH . 
E 5 HOH A 8 308 308 HOH HOH . 
E 5 HOH A 9 309 309 HOH HOH . 
E 5 HOH A 10 310 310 HOH HOH . 
E 5 HOH A 11 311 311 HOH HOH . 
E 5 HOH A 12 312 312 HOH HOH . 
E 5 HOH A 13 313 313 HOH HOH . 
E 5 HOH A 14 314 314 HOH HOH . 
E 5 HOH A 15 315 315 HOH HOH . 
E 5 HOH A 16 316 316 HOH HOH . 
E 5 HOH A 17 317 317 HOH HOH . 
E 5 HOH A 18 318 318 HOH HOH . 
E 5 HOH A 19 319 319 HOH HOH . 
E 5 HOH A 20 320 320 HOH HOH . 
E 5 HOH A 21 321 321 HOH HOH . 
E 5 HOH A 22 322 322 HOH HOH . 
E 5 HOH A 23 323 323 HOH HOH . 
E 5 HOH A 24 324 324 HOH HOH . 
E 5 HOH A 25 325 325 HOH HOH . 
E 5 HOH A 26 326 326 HOH HOH . 
E 5 HOH A 27 327 327 HOH HOH . 
E 5 HOH A 28 328 328 HOH HOH . 
E 5 HOH A 29 329 329 HOH HOH . 
E 5 HOH A 30 330 330 HOH HOH . 
E 5 HOH A 31 331 331 HOH HOH . 
E 5 HOH A 32 332 332 HOH HOH . 
E 5 HOH A 33 333 333 HOH HOH . 
E 5 HOH A 34 334 334 HOH HOH . 
E 5 HOH A 35 335 335 HOH HOH . 
E 5 HOH A 36 336 336 HOH HOH . 
E 5 HOH A 37 337 337 HOH HOH . 
E 5 HOH A 38 338 338 HOH HOH . 
E 5 HOH A 39 339 339 HOH HOH . 
E 5 HOH A 40 340 340 HOH HOH . 
E 5 HOH A 41 341 341 HOH HOH . 
E 5 HOH A 42 342 342 HOH HOH . 
E 5 HOH A 43 343 343 HOH HOH . 
E 5 HOH A 44 344 344 HOH HOH . 
E 5 HOH A 45 345 345 HOH HOH . 
E 5 HOH A 46 346 346 HOH HOH . 
E 5 HOH A 47 347 347 HOH HOH . 
E 5 HOH A 48 348 348 HOH HOH . 
E 5 HOH A 49 349 349 HOH HOH . 
E 5 HOH A 50 350 350 HOH HOH . 
E 5 HOH A 51 351 351 HOH HOH . 
E 5 HOH A 52 352 352 HOH HOH . 
E 5 HOH A 53 353 353 HOH HOH . 
E 5 HOH A 54 354 354 HOH HOH . 
E 5 HOH A 55 355 355 HOH HOH . 
E 5 HOH A 56 356 356 HOH HOH . 
E 5 HOH A 57 357 357 HOH HOH . 
E 5 HOH A 58 358 358 HOH HOH . 
E 5 HOH A 59 359 359 HOH HOH . 
E 5 HOH A 60 360 360 HOH HOH . 
E 5 HOH A 61 361 361 HOH HOH . 
E 5 HOH A 62 362 362 HOH HOH . 
E 5 HOH A 63 363 363 HOH HOH . 
E 5 HOH A 64 364 364 HOH HOH . 
E 5 HOH A 65 365 365 HOH HOH . 
E 5 HOH A 66 366 366 HOH HOH . 
E 5 HOH A 67 367 367 HOH HOH . 
E 5 HOH A 68 368 368 HOH HOH . 
E 5 HOH A 69 369 369 HOH HOH . 
E 5 HOH A 70 370 370 HOH HOH . 
E 5 HOH A 71 371 371 HOH HOH . 
E 5 HOH A 72 372 372 HOH HOH . 
E 5 HOH A 73 373 373 HOH HOH . 
E 5 HOH A 74 374 374 HOH HOH . 
E 5 HOH A 75 375 375 HOH HOH . 
E 5 HOH A 76 376 376 HOH HOH . 
E 5 HOH A 77 377 377 HOH HOH . 
E 5 HOH A 78 378 378 HOH HOH . 
E 5 HOH A 79 379 379 HOH HOH . 
E 5 HOH A 80 380 380 HOH HOH . 
E 5 HOH A 81 381 381 HOH HOH . 
E 5 HOH A 82 382 382 HOH HOH . 
E 5 HOH A 83 383 383 HOH HOH . 
E 5 HOH A 84 384 384 HOH HOH . 
E 5 HOH A 85 385 385 HOH HOH . 
E 5 HOH A 86 386 386 HOH HOH . 
E 5 HOH A 87 387 387 HOH HOH . 
E 5 HOH A 88 388 388 HOH HOH . 
E 5 HOH A 89 389 389 HOH HOH . 
E 5 HOH A 90 390 390 HOH HOH . 
E 5 HOH A 91 391 391 HOH HOH . 
E 5 HOH A 92 392 392 HOH HOH . 
E 5 HOH A 93 393 393 HOH HOH . 
E 5 HOH A 94 394 394 HOH HOH . 
E 5 HOH A 95 395 395 HOH HOH . 
E 5 HOH A 96 396 396 HOH HOH . 
E 5 HOH A 97 397 397 HOH HOH . 
E 5 HOH A 98 398 398 HOH HOH . 
E 5 HOH A 99 399 399 HOH HOH . 
E 5 HOH A 100 400 400 HOH HOH . 
E 5 HOH A 101 401 401 HOH HOH . 
E 5 HOH A 102 402 402 HOH HOH . 
E 5 HOH A 103 403 403 HOH HOH . 
E 5 HOH A 104 404 404 HOH HOH . 
E 5 HOH A 105 405 405 HOH HOH . 
E 5 HOH A 106 406 406 HOH HOH . 
E 5 HOH A 107 407 407 HOH HOH . 
E 5 HOH A 108 408 408 HOH HOH . 
E 5 HOH A 109 409 409 HOH HOH . 
E 5 HOH A 110 410 410 HOH HOH . 
E 5 HOH A 111 411 411 HOH HOH . 
E 5 HOH A 112 412 412 HOH HOH . 
E 5 HOH A 113 413 413 HOH HOH . 
E 5 HOH A 114 414 414 HOH HOH . 
E 5 HOH A 115 415 415 HOH HOH . 
E 5 HOH A 116 416 416 HOH HOH . 
E 5 HOH A 117 417 417 HOH HOH . 
E 5 HOH A 118 418 418 HOH HOH . 
E 5 HOH A 119 419 419 HOH HOH . 
E 5 HOH A 120 420 420 HOH HOH . 
E 5 HOH A 121 421 421 HOH HOH . 
E 5 HOH A 122 422 422 HOH HOH . 
E 5 HOH A 123 423 423 HOH HOH . 
E 5 HOH A 124 424 424 HOH HOH . 
E 5 HOH A 125 425 425 HOH HOH . 
E 5 HOH A 126 426 426 HOH HOH . 
E 5 HOH A 127 427 427 HOH HOH . 
E 5 HOH A 128 428 428 HOH HOH . 
E 5 HOH A 129 429 429 HOH HOH . 
E 5 HOH A 130 430 430 HOH HOH . 
E 5 HOH A 131 431 431 HOH HOH . 
E 5 HOH A 132 432 432 HOH HOH . 
E 5 HOH A 133 433 433 HOH HOH . 
E 5 HOH A 134 434 434 HOH HOH . 
E 5 HOH A 135 435 435 HOH HOH . 
E 5 HOH A 136 436 436 HOH HOH . 
E 5 HOH A 137 437 437 HOH HOH . 
E 5 HOH A 138 438 438 HOH HOH . 
E 5 HOH A 139 439 439 HOH HOH . 
E 5 HOH A 140 440 440 HOH HOH . 
E 5 HOH A 141 441 441 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 -0.743 -34.87 9.552 1 81.24 ? C1 NAG 204 A 1 
HETATM 2 C C2 NAG . . . D 4 -1.514 -36.207 9.31 1 95.42 ? C2 NAG 204 A 1 
HETATM 3 C C3 NAG . . . D 4 -0.586 -37.439 9.541 1 93.94 ? C3 NAG 204 A 1 
HETATM 4 C C4 NAG . . . D 4 0.809 -37.368 8.893 1 86.61 ? C4 NAG 204 A 1 
HETATM 5 C C5 NAG . . . D 4 1.255 -35.944 8.562 1 80.84 ? C5 NAG 204 A 1 
HETATM 6 C C6 NAG . . . D 4 0.92 -35.494 7.131 1 84.11 ? C6 NAG 204 A 1 
HETATM 7 C C7 NAG . . . D 4 -3.763 -37.166 9.946 1 105.04 ? C7 NAG 204 A 1 
HETATM 8 C C8 NAG . . . D 4 -4.896 -37.146 10.942 1 94.09 ? C8 NAG 204 A 1 
HETATM 9 N N2 NAG . . . D 4 -2.721 -36.328 10.165 1 107.96 ? N2 NAG 204 A 1 
HETATM 10 O O3 NAG . . . D 4 -1.184 -38.657 9.073 1 97.25 ? O3 NAG 204 A 1 
HETATM 11 O O4 NAG . . . D 4 1.765 -37.939 9.8 1 82.94 ? O4 NAG 204 A 1 
HETATM 12 O O5 NAG . . . D 4 0.692 -35.077 9.555 1 71.04 ? O5 NAG 204 A 1 
HETATM 13 O O6 NAG . . . D 4 1.441 -36.43 6.189 1 87.18 ? O6 NAG 204 A 1 
HETATM 14 O O7 NAG . . . D 4 -3.813 -37.92 8.987 1 112.54 ? O7 NAG 204 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#