data_6KFQ # _model_server_result.job_id 0At3IpLgMuPUunt8ZfwKbQ _model_server_result.datetime_utc '2024-10-10 06:21:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kfq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":317}' # _entry.id 6KFQ # _exptl.entry_id 6KFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KFQ _cell.length_a 29.93 _cell.length_b 68.41 _cell.length_c 107.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 209 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 209 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id R _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 317 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.429 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 320 n n C1 C6 RET sing 321 n n C1 C16 RET sing 322 n n C1 C17 RET sing 323 n n C2 C3 RET sing 324 n n C2 H21 RET sing 325 n n C2 H22 RET sing 326 n n C3 C4 RET sing 327 n n C3 H31 RET sing 328 n n C3 H32 RET sing 329 n n C4 C5 RET sing 330 n n C4 H41 RET sing 331 n n C4 H42 RET sing 332 n n C5 C6 RET doub 333 n n C5 C18 RET sing 334 n n C6 C7 RET sing 335 n n C7 C8 RET doub 336 e n C7 H7 RET sing 337 n n C8 C9 RET sing 338 n n C8 H8 RET sing 339 n n C9 C10 RET doub 340 e n C9 C19 RET sing 341 n n C10 C11 RET sing 342 n n C10 H10 RET sing 343 n n C11 C12 RET doub 344 e n C11 H11 RET sing 345 n n C12 C13 RET sing 346 n n C12 H12 RET sing 347 n n C13 C14 RET doub 348 e n C13 C20 RET sing 349 n n C14 C15 RET sing 350 n n C14 H14 RET sing 351 n n C15 O1 RET doub 352 n n C15 H15 RET sing 353 n n C16 H161 RET sing 354 n n C16 H162 RET sing 355 n n C16 H163 RET sing 356 n n C17 H171 RET sing 357 n n C17 H172 RET sing 358 n n C17 H173 RET sing 359 n n C18 H181 RET sing 360 n n C18 H182 RET sing 361 n n C18 H183 RET sing 362 n n C19 H191 RET sing 363 n n C19 H192 RET sing 364 n n C19 H193 RET sing 365 n n C20 H201 RET sing 366 n n C20 H202 RET sing 367 n n C20 H203 RET sing 368 n n # _atom_sites.entry_id 6KFQ _atom_sites.fract_transf_matrix[1][1] 0.033411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPG A 1 301 1 MPG MPG . C 2 MPG A 1 302 2 MPG MPG . D 2 MPG A 1 303 3 MPG MPG . E 2 MPG A 1 304 4 MPG MPG . F 2 MPG A 1 305 5 MPG MPG . G 2 MPG A 1 306 6 MPG MPG . H 2 MPG A 1 307 7 MPG MPG . I 2 MPG A 1 308 8 MPG MPG . J 2 MPG A 1 309 9 MPG MPG . K 2 MPG A 1 310 10 MPG MPG . L 2 MPG A 1 311 11 MPG MPG . M 2 MPG A 1 312 12 MPG MPG . N 2 MPG A 1 313 13 MPG MPG . O 2 MPG A 1 314 14 MPG MPG . P 2 MPG A 1 315 15 MPG MPG . Q 2 MPG A 1 316 16 MPG MPG . R 3 RET A 1 317 294 RET RET . S 4 SO4 A 1 318 301 SO4 SO4 . T 4 SO4 A 1 319 401 SO4 SO4 . U 5 HOH A 1 401 2 HOH HOH . U 5 HOH A 2 402 13 HOH HOH . U 5 HOH A 3 403 11 HOH HOH . U 5 HOH A 4 404 10 HOH HOH . U 5 HOH A 5 405 19 HOH HOH . U 5 HOH A 6 406 16 HOH HOH . U 5 HOH A 7 407 14 HOH HOH . U 5 HOH A 8 408 17 HOH HOH . U 5 HOH A 9 409 1 HOH HOH . U 5 HOH A 10 410 5 HOH HOH . U 5 HOH A 11 411 9 HOH HOH . U 5 HOH A 12 412 21 HOH HOH . U 5 HOH A 13 413 12 HOH HOH . U 5 HOH A 14 414 3 HOH HOH . U 5 HOH A 15 415 6 HOH HOH . U 5 HOH A 16 416 8 HOH HOH . U 5 HOH A 17 417 15 HOH HOH . U 5 HOH A 18 418 20 HOH HOH . U 5 HOH A 19 419 7 HOH HOH . U 5 HOH A 20 420 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . R 3 12.786 1.95 -29.864 1 23.15 ? C1 RET 317 A 1 HETATM 2 C C2 RET . . . R 3 13.155 2.854 -31.049 1 24.51 ? C2 RET 317 A 1 HETATM 3 C C3 RET . . . R 3 13.145 4.337 -30.748 1 25.96 ? C3 RET 317 A 1 HETATM 4 C C4 RET . . . R 3 14.047 4.667 -29.576 1 25.04 ? C4 RET 317 A 1 HETATM 5 C C5 RET . . . R 3 13.953 3.685 -28.43 1 26.76 ? C5 RET 317 A 1 HETATM 6 C C6 RET . . . R 3 13.312 2.505 -28.525 1 23.58 ? C6 RET 317 A 1 HETATM 7 C C7 RET . . . R 3 13.273 1.615 -27.373 1 24.66 ? C7 RET 317 A 1 HETATM 8 C C8 RET . . . R 3 12.595 0.453 -27.174 1 24.79 ? C8 RET 317 A 1 HETATM 9 C C9 RET . . . R 3 12.585 -0.417 -26.019 1 21.35 ? C9 RET 317 A 1 HETATM 10 C C10 RET . . . R 3 11.987 -1.618 -26.123 1 19.98 ? C10 RET 317 A 1 HETATM 11 C C11 RET . . . R 3 11.856 -2.625 -25.111 1 20.84 ? C11 RET 317 A 1 HETATM 12 C C12 RET . . . R 3 11.201 -3.754 -25.362 1 21.47 ? C12 RET 317 A 1 HETATM 13 C C13 RET . . . R 3 10.968 -4.85 -24.449 1 20.9 ? C13 RET 317 A 1 HETATM 14 C C14 RET . . . R 3 10.174 -5.871 -24.851 1 20.73 ? C14 RET 317 A 1 HETATM 15 C C15 RET . . . R 3 9.785 -7.028 -24.098 1 21.73 ? C15 RET 317 A 1 HETATM 16 C C16 RET . . . R 3 11.255 1.827 -29.838 1 19.94 ? C16 RET 317 A 1 HETATM 17 C C17 RET . . . R 3 13.391 0.574 -30.206 1 21.62 ? C17 RET 317 A 1 HETATM 18 C C18 RET . . . R 3 14.483 4.254 -27.142 1 25.32 ? C18 RET 317 A 1 HETATM 19 C C19 RET . . . R 3 13.264 0.047 -24.762 1 19.24 ? C19 RET 317 A 1 HETATM 20 C C20 RET . . . R 3 11.592 -4.778 -23.084 1 17.52 ? C20 RET 317 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #