data_6KFT # _model_server_result.job_id iGg48mdrz0VDGenC26pujw _model_server_result.datetime_utc '2024-11-04 23:43:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kft # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1101}' # _entry.id 6KFT # _exptl.entry_id 6KFT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KFT _cell.length_a 106.362 _cell.length_b 106.362 _cell.length_c 303.858 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KFT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 H N N ? 8 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 43 A THR 24 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc2 A OG1 THR 61 A THR 42 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc3 E O2G GTP . A GTP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc4 E O2B GTP . A GTP 301 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc5 F MG MG . A MG 302 1_555 K O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc6 F MG MG . A MG 302 1_555 K O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc7 C OH TYR 410 C TYR 465 1_555 J NA NA . C NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc8 C O TRP 455 C TRP 510 1_555 J NA NA . C NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? metalc ? metalc9 C OH TYR 502 C TYR 557 1_555 J NA NA . C NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 6KFT _atom_sites.fract_transf_matrix[1][1] 0.009402 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GTP A 1 301 1177 GTP GTP . F 6 MG A 1 302 302 MG MG . G 7 EDO A 1 303 303 EDO EDO . H 8 GOL C 1 1101 1101 GOL GOL . I 8 GOL C 1 1102 1102 GOL GOL . J 9 NA C 1 1103 1104 NA NA . K 10 HOH A 1 401 2 HOH HOH . K 10 HOH A 2 402 107 HOH HOH . K 10 HOH A 3 403 1 HOH HOH . K 10 HOH A 4 404 31 HOH HOH . K 10 HOH A 5 405 93 HOH HOH . K 10 HOH A 6 406 89 HOH HOH . K 10 HOH A 7 407 48 HOH HOH . K 10 HOH A 8 408 28 HOH HOH . K 10 HOH A 9 409 106 HOH HOH . K 10 HOH A 10 410 60 HOH HOH . K 10 HOH A 11 411 56 HOH HOH . K 10 HOH A 12 412 18 HOH HOH . K 10 HOH A 13 413 95 HOH HOH . K 10 HOH A 14 414 98 HOH HOH . K 10 HOH A 15 415 46 HOH HOH . K 10 HOH A 16 416 30 HOH HOH . K 10 HOH A 17 417 5 HOH HOH . K 10 HOH A 18 418 32 HOH HOH . K 10 HOH A 19 419 116 HOH HOH . K 10 HOH A 20 420 79 HOH HOH . K 10 HOH A 21 421 27 HOH HOH . K 10 HOH A 22 422 112 HOH HOH . K 10 HOH A 23 423 94 HOH HOH . L 10 HOH B 1 301 54 HOH HOH . L 10 HOH B 2 302 22 HOH HOH . M 10 HOH C 1 1201 3 HOH HOH . M 10 HOH C 2 1202 23 HOH HOH . M 10 HOH C 3 1203 40 HOH HOH . M 10 HOH C 4 1204 50 HOH HOH . M 10 HOH C 5 1205 10 HOH HOH . M 10 HOH C 6 1206 24 HOH HOH . M 10 HOH C 7 1207 29 HOH HOH . M 10 HOH C 8 1208 69 HOH HOH . M 10 HOH C 9 1209 43 HOH HOH . M 10 HOH C 10 1210 62 HOH HOH . M 10 HOH C 11 1211 90 HOH HOH . M 10 HOH C 12 1212 12 HOH HOH . M 10 HOH C 13 1213 36 HOH HOH . M 10 HOH C 14 1214 14 HOH HOH . M 10 HOH C 15 1215 26 HOH HOH . M 10 HOH C 16 1216 88 HOH HOH . M 10 HOH C 17 1217 113 HOH HOH . M 10 HOH C 18 1218 99 HOH HOH . M 10 HOH C 19 1219 76 HOH HOH . M 10 HOH C 20 1220 21 HOH HOH . M 10 HOH C 21 1221 68 HOH HOH . M 10 HOH C 22 1222 38 HOH HOH . M 10 HOH C 23 1223 7 HOH HOH . M 10 HOH C 24 1224 97 HOH HOH . M 10 HOH C 25 1225 33 HOH HOH . M 10 HOH C 26 1226 70 HOH HOH . M 10 HOH C 27 1227 71 HOH HOH . M 10 HOH C 28 1228 83 HOH HOH . M 10 HOH C 29 1229 4 HOH HOH . M 10 HOH C 30 1230 16 HOH HOH . M 10 HOH C 31 1231 78 HOH HOH . M 10 HOH C 32 1232 82 HOH HOH . M 10 HOH C 33 1233 109 HOH HOH . M 10 HOH C 34 1234 6 HOH HOH . M 10 HOH C 35 1235 87 HOH HOH . M 10 HOH C 36 1236 11 HOH HOH . M 10 HOH C 37 1237 57 HOH HOH . M 10 HOH C 38 1238 25 HOH HOH . M 10 HOH C 39 1239 105 HOH HOH . M 10 HOH C 40 1240 63 HOH HOH . M 10 HOH C 41 1241 53 HOH HOH . M 10 HOH C 42 1242 17 HOH HOH . M 10 HOH C 43 1243 108 HOH HOH . M 10 HOH C 44 1244 110 HOH HOH . M 10 HOH C 45 1245 104 HOH HOH . M 10 HOH C 46 1246 42 HOH HOH . M 10 HOH C 47 1247 52 HOH HOH . M 10 HOH C 48 1248 101 HOH HOH . M 10 HOH C 49 1249 84 HOH HOH . M 10 HOH C 50 1250 100 HOH HOH . M 10 HOH C 51 1251 64 HOH HOH . M 10 HOH C 52 1252 77 HOH HOH . M 10 HOH C 53 1253 47 HOH HOH . M 10 HOH C 54 1254 67 HOH HOH . M 10 HOH C 55 1255 45 HOH HOH . M 10 HOH C 56 1256 86 HOH HOH . M 10 HOH C 57 1257 8 HOH HOH . M 10 HOH C 58 1258 19 HOH HOH . M 10 HOH C 59 1259 81 HOH HOH . M 10 HOH C 60 1260 37 HOH HOH . M 10 HOH C 61 1261 51 HOH HOH . M 10 HOH C 62 1262 103 HOH HOH . M 10 HOH C 63 1263 117 HOH HOH . M 10 HOH C 64 1264 13 HOH HOH . M 10 HOH C 65 1265 49 HOH HOH . M 10 HOH C 66 1266 39 HOH HOH . M 10 HOH C 67 1267 15 HOH HOH . M 10 HOH C 68 1268 9 HOH HOH . M 10 HOH C 69 1269 35 HOH HOH . M 10 HOH C 70 1270 92 HOH HOH . M 10 HOH C 71 1271 102 HOH HOH . M 10 HOH C 72 1272 74 HOH HOH . M 10 HOH C 73 1273 20 HOH HOH . M 10 HOH C 74 1274 96 HOH HOH . M 10 HOH C 75 1275 55 HOH HOH . M 10 HOH C 76 1276 34 HOH HOH . M 10 HOH C 77 1277 59 HOH HOH . M 10 HOH C 78 1278 61 HOH HOH . M 10 HOH C 79 1279 114 HOH HOH . M 10 HOH C 80 1280 80 HOH HOH . M 10 HOH C 81 1281 73 HOH HOH . M 10 HOH C 82 1282 41 HOH HOH . M 10 HOH C 83 1283 44 HOH HOH . M 10 HOH C 84 1284 85 HOH HOH . M 10 HOH C 85 1285 91 HOH HOH . M 10 HOH C 86 1286 72 HOH HOH . M 10 HOH C 87 1287 65 HOH HOH . M 10 HOH C 88 1288 66 HOH HOH . M 10 HOH C 89 1289 111 HOH HOH . M 10 HOH C 90 1290 115 HOH HOH . M 10 HOH C 91 1291 75 HOH HOH . N 10 HOH D 1 101 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 8 54.38 -28.863 7.039 1 84.68 ? C1 GOL 1101 C 1 HETATM 2 O O1 GOL . . . H 8 55.36 -29.771 6.531 1 87.83 ? O1 GOL 1101 C 1 HETATM 3 C C2 GOL . . . H 8 53 -29.435 6.723 1 84.43 ? C2 GOL 1101 C 1 HETATM 4 O O2 GOL . . . H 8 52.574 -30.337 7.761 1 83.47 ? O2 GOL 1101 C 1 HETATM 5 C C3 GOL . . . H 8 51.989 -28.296 6.566 1 84.32 ? C3 GOL 1101 C 1 HETATM 6 O O3 GOL . . . H 8 51.834 -27.934 5.187 1 85.74 ? O3 GOL 1101 C 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #