data_6KFY # _model_server_result.job_id jbkQdDviZW5VzKAWZSpPmg _model_server_result.datetime_utc '2024-11-28 02:18:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6KFY # _exptl.entry_id 6KFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6KFY _cell.length_a 92.9 _cell.length_b 92.9 _cell.length_c 129.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -43.066667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 226 A HIS 223 1_555 A N LLP 227 A LLP 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C LLP 227 A LLP 224 1_555 A N MET 228 A MET 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 284 n n C1 C2 PEG sing 285 n n C1 H11 PEG sing 286 n n C1 H12 PEG sing 287 n n O1 HO1 PEG sing 288 n n C2 O2 PEG sing 289 n n C2 H21 PEG sing 290 n n C2 H22 PEG sing 291 n n O2 C3 PEG sing 292 n n C3 C4 PEG sing 293 n n C3 H31 PEG sing 294 n n C3 H32 PEG sing 295 n n C4 O4 PEG sing 296 n n C4 H41 PEG sing 297 n n C4 H42 PEG sing 298 n n O4 HO4 PEG sing 299 n n # _atom_sites.entry_id 6KFY _atom_sites.fract_transf_matrix[1][1] 0.010764 _atom_sites.fract_transf_matrix[1][2] 0.006215 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PGE A 1 501 501 PGE PGE . C 3 PEG A 1 502 601 PEG PEG . D 3 PEG A 1 503 701 PEG PEG . E 3 PEG A 1 504 801 PEG PEG . F 3 PEG A 1 505 901 PEG PEG . G 3 PEG A 1 506 1001 PEG PEG . H 4 SO4 A 1 507 1101 SO4 SO4 . I 5 HOH A 1 601 173 HOH HOH . I 5 HOH A 2 602 42 HOH HOH . I 5 HOH A 3 603 121 HOH HOH . I 5 HOH A 4 604 130 HOH HOH . I 5 HOH A 5 605 56 HOH HOH . I 5 HOH A 6 606 163 HOH HOH . I 5 HOH A 7 607 183 HOH HOH . I 5 HOH A 8 608 140 HOH HOH . I 5 HOH A 9 609 90 HOH HOH . I 5 HOH A 10 610 214 HOH HOH . I 5 HOH A 11 611 67 HOH HOH . I 5 HOH A 12 612 93 HOH HOH . I 5 HOH A 13 613 60 HOH HOH . I 5 HOH A 14 614 63 HOH HOH . I 5 HOH A 15 615 92 HOH HOH . I 5 HOH A 16 616 70 HOH HOH . I 5 HOH A 17 617 13 HOH HOH . I 5 HOH A 18 618 14 HOH HOH . I 5 HOH A 19 619 190 HOH HOH . I 5 HOH A 20 620 78 HOH HOH . I 5 HOH A 21 621 166 HOH HOH . I 5 HOH A 22 622 164 HOH HOH . I 5 HOH A 23 623 203 HOH HOH . I 5 HOH A 24 624 36 HOH HOH . I 5 HOH A 25 625 86 HOH HOH . I 5 HOH A 26 626 75 HOH HOH . I 5 HOH A 27 627 209 HOH HOH . I 5 HOH A 28 628 4 HOH HOH . I 5 HOH A 29 629 149 HOH HOH . I 5 HOH A 30 630 7 HOH HOH . I 5 HOH A 31 631 222 HOH HOH . I 5 HOH A 32 632 34 HOH HOH . I 5 HOH A 33 633 15 HOH HOH . I 5 HOH A 34 634 9 HOH HOH . I 5 HOH A 35 635 180 HOH HOH . I 5 HOH A 36 636 206 HOH HOH . I 5 HOH A 37 637 177 HOH HOH . I 5 HOH A 38 638 2 HOH HOH . I 5 HOH A 39 639 106 HOH HOH . I 5 HOH A 40 640 58 HOH HOH . I 5 HOH A 41 641 61 HOH HOH . I 5 HOH A 42 642 45 HOH HOH . I 5 HOH A 43 643 213 HOH HOH . I 5 HOH A 44 644 89 HOH HOH . I 5 HOH A 45 645 65 HOH HOH . I 5 HOH A 46 646 68 HOH HOH . I 5 HOH A 47 647 88 HOH HOH . I 5 HOH A 48 648 44 HOH HOH . I 5 HOH A 49 649 94 HOH HOH . I 5 HOH A 50 650 46 HOH HOH . I 5 HOH A 51 651 160 HOH HOH . I 5 HOH A 52 652 168 HOH HOH . I 5 HOH A 53 653 87 HOH HOH . I 5 HOH A 54 654 69 HOH HOH . I 5 HOH A 55 655 20 HOH HOH . I 5 HOH A 56 656 144 HOH HOH . I 5 HOH A 57 657 31 HOH HOH . I 5 HOH A 58 658 126 HOH HOH . I 5 HOH A 59 659 35 HOH HOH . I 5 HOH A 60 660 21 HOH HOH . I 5 HOH A 61 661 156 HOH HOH . I 5 HOH A 62 662 187 HOH HOH . I 5 HOH A 63 663 11 HOH HOH . I 5 HOH A 64 664 85 HOH HOH . I 5 HOH A 65 665 188 HOH HOH . I 5 HOH A 66 666 53 HOH HOH . I 5 HOH A 67 667 18 HOH HOH . I 5 HOH A 68 668 111 HOH HOH . I 5 HOH A 69 669 95 HOH HOH . I 5 HOH A 70 670 29 HOH HOH . I 5 HOH A 71 671 51 HOH HOH . I 5 HOH A 72 672 48 HOH HOH . I 5 HOH A 73 673 19 HOH HOH . I 5 HOH A 74 674 28 HOH HOH . I 5 HOH A 75 675 30 HOH HOH . I 5 HOH A 76 676 23 HOH HOH . I 5 HOH A 77 677 79 HOH HOH . I 5 HOH A 78 678 32 HOH HOH . I 5 HOH A 79 679 113 HOH HOH . I 5 HOH A 80 680 202 HOH HOH . I 5 HOH A 81 681 103 HOH HOH . I 5 HOH A 82 682 72 HOH HOH . I 5 HOH A 83 683 114 HOH HOH . I 5 HOH A 84 684 172 HOH HOH . I 5 HOH A 85 685 50 HOH HOH . I 5 HOH A 86 686 24 HOH HOH . I 5 HOH A 87 687 153 HOH HOH . I 5 HOH A 88 688 133 HOH HOH . I 5 HOH A 89 689 216 HOH HOH . I 5 HOH A 90 690 143 HOH HOH . I 5 HOH A 91 691 191 HOH HOH . I 5 HOH A 92 692 127 HOH HOH . I 5 HOH A 93 693 22 HOH HOH . I 5 HOH A 94 694 167 HOH HOH . I 5 HOH A 95 695 27 HOH HOH . I 5 HOH A 96 696 40 HOH HOH . I 5 HOH A 97 697 91 HOH HOH . I 5 HOH A 98 698 101 HOH HOH . I 5 HOH A 99 699 74 HOH HOH . I 5 HOH A 100 700 186 HOH HOH . I 5 HOH A 101 701 155 HOH HOH . I 5 HOH A 102 702 17 HOH HOH . I 5 HOH A 103 703 59 HOH HOH . I 5 HOH A 104 704 41 HOH HOH . I 5 HOH A 105 705 82 HOH HOH . I 5 HOH A 106 706 62 HOH HOH . I 5 HOH A 107 707 207 HOH HOH . I 5 HOH A 108 708 200 HOH HOH . I 5 HOH A 109 709 10 HOH HOH . I 5 HOH A 110 710 208 HOH HOH . I 5 HOH A 111 711 77 HOH HOH . I 5 HOH A 112 712 174 HOH HOH . I 5 HOH A 113 713 5 HOH HOH . I 5 HOH A 114 714 139 HOH HOH . I 5 HOH A 115 715 37 HOH HOH . I 5 HOH A 116 716 49 HOH HOH . I 5 HOH A 117 717 197 HOH HOH . I 5 HOH A 118 718 12 HOH HOH . I 5 HOH A 119 719 182 HOH HOH . I 5 HOH A 120 720 76 HOH HOH . I 5 HOH A 121 721 100 HOH HOH . I 5 HOH A 122 722 1 HOH HOH . I 5 HOH A 123 723 212 HOH HOH . I 5 HOH A 124 724 110 HOH HOH . I 5 HOH A 125 725 6 HOH HOH . I 5 HOH A 126 726 8 HOH HOH . I 5 HOH A 127 727 71 HOH HOH . I 5 HOH A 128 728 47 HOH HOH . I 5 HOH A 129 729 104 HOH HOH . I 5 HOH A 130 730 55 HOH HOH . I 5 HOH A 131 731 73 HOH HOH . I 5 HOH A 132 732 162 HOH HOH . I 5 HOH A 133 733 112 HOH HOH . I 5 HOH A 134 734 26 HOH HOH . I 5 HOH A 135 735 134 HOH HOH . I 5 HOH A 136 736 102 HOH HOH . I 5 HOH A 137 737 147 HOH HOH . I 5 HOH A 138 738 38 HOH HOH . I 5 HOH A 139 739 185 HOH HOH . I 5 HOH A 140 740 109 HOH HOH . I 5 HOH A 141 741 16 HOH HOH . I 5 HOH A 142 742 211 HOH HOH . I 5 HOH A 143 743 138 HOH HOH . I 5 HOH A 144 744 150 HOH HOH . I 5 HOH A 145 745 39 HOH HOH . I 5 HOH A 146 746 205 HOH HOH . I 5 HOH A 147 747 54 HOH HOH . I 5 HOH A 148 748 210 HOH HOH . I 5 HOH A 149 749 132 HOH HOH . I 5 HOH A 150 750 3 HOH HOH . I 5 HOH A 151 751 199 HOH HOH . I 5 HOH A 152 752 193 HOH HOH . I 5 HOH A 153 753 201 HOH HOH . I 5 HOH A 154 754 142 HOH HOH . I 5 HOH A 155 755 122 HOH HOH . I 5 HOH A 156 756 184 HOH HOH . I 5 HOH A 157 757 83 HOH HOH . I 5 HOH A 158 758 98 HOH HOH . I 5 HOH A 159 759 125 HOH HOH . I 5 HOH A 160 760 33 HOH HOH . I 5 HOH A 161 761 25 HOH HOH . I 5 HOH A 162 762 175 HOH HOH . I 5 HOH A 163 763 81 HOH HOH . I 5 HOH A 164 764 146 HOH HOH . I 5 HOH A 165 765 171 HOH HOH . I 5 HOH A 166 766 118 HOH HOH . I 5 HOH A 167 767 176 HOH HOH . I 5 HOH A 168 768 181 HOH HOH . I 5 HOH A 169 769 96 HOH HOH . I 5 HOH A 170 770 194 HOH HOH . I 5 HOH A 171 771 52 HOH HOH . I 5 HOH A 172 772 43 HOH HOH . I 5 HOH A 173 773 57 HOH HOH . I 5 HOH A 174 774 80 HOH HOH . I 5 HOH A 175 775 135 HOH HOH . I 5 HOH A 176 776 218 HOH HOH . I 5 HOH A 177 777 64 HOH HOH . I 5 HOH A 178 778 117 HOH HOH . I 5 HOH A 179 779 115 HOH HOH . I 5 HOH A 180 780 151 HOH HOH . I 5 HOH A 181 781 224 HOH HOH . I 5 HOH A 182 782 148 HOH HOH . I 5 HOH A 183 783 107 HOH HOH . I 5 HOH A 184 784 84 HOH HOH . I 5 HOH A 185 785 128 HOH HOH . I 5 HOH A 186 786 119 HOH HOH . I 5 HOH A 187 787 221 HOH HOH . I 5 HOH A 188 788 137 HOH HOH . I 5 HOH A 189 789 192 HOH HOH . I 5 HOH A 190 790 220 HOH HOH . I 5 HOH A 191 791 169 HOH HOH . I 5 HOH A 192 792 178 HOH HOH . I 5 HOH A 193 793 145 HOH HOH . I 5 HOH A 194 794 136 HOH HOH . I 5 HOH A 195 795 217 HOH HOH . I 5 HOH A 196 796 195 HOH HOH . I 5 HOH A 197 797 219 HOH HOH . I 5 HOH A 198 798 189 HOH HOH . I 5 HOH A 199 799 99 HOH HOH . I 5 HOH A 200 800 129 HOH HOH . I 5 HOH A 201 801 165 HOH HOH . I 5 HOH A 202 802 215 HOH HOH . I 5 HOH A 203 803 123 HOH HOH . I 5 HOH A 204 804 152 HOH HOH . I 5 HOH A 205 805 141 HOH HOH . I 5 HOH A 206 806 120 HOH HOH . I 5 HOH A 207 807 116 HOH HOH . I 5 HOH A 208 808 179 HOH HOH . I 5 HOH A 209 809 223 HOH HOH . I 5 HOH A 210 810 66 HOH HOH . I 5 HOH A 211 811 196 HOH HOH . I 5 HOH A 212 812 159 HOH HOH . I 5 HOH A 213 813 105 HOH HOH . I 5 HOH A 214 814 131 HOH HOH . I 5 HOH A 215 815 124 HOH HOH . I 5 HOH A 216 816 170 HOH HOH . I 5 HOH A 217 817 161 HOH HOH . I 5 HOH A 218 818 204 HOH HOH . I 5 HOH A 219 819 157 HOH HOH . I 5 HOH A 220 820 108 HOH HOH . I 5 HOH A 221 821 198 HOH HOH . I 5 HOH A 222 822 158 HOH HOH . I 5 HOH A 223 823 154 HOH HOH . I 5 HOH A 224 824 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . E 3 -20.413 20.777 -6.8 1 70.75 ? C1 PEG 504 A 1 HETATM 2 O O1 PEG . . . E 3 -21.417 21.011 -5.843 1 70.74 ? O1 PEG 504 A 1 HETATM 3 C C2 PEG . . . E 3 -20.832 19.888 -7.993 1 66.65 ? C2 PEG 504 A 1 HETATM 4 O O2 PEG . . . E 3 -20.917 20.632 -9.198 1 63.62 ? O2 PEG 504 A 1 HETATM 5 C C3 PEG . . . E 3 -22.116 21.342 -9.32 1 56.43 ? C3 PEG 504 A 1 HETATM 6 C C4 PEG . . . E 3 -22.375 22.191 -10.577 1 49.56 ? C4 PEG 504 A 1 HETATM 7 O O4 PEG . . . E 3 -23.194 23.228 -10.045 1 46.52 ? O4 PEG 504 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #