data_6KG2 # _model_server_result.job_id '_tdqE6HthEnxFXrjQj0WEA' _model_server_result.datetime_utc '2025-01-11 14:47:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kg2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 6KG2 # _exptl.entry_id 6KG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6KG2 _cell.length_a 116.992 _cell.length_b 116.992 _cell.length_c 112.869 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 307 n n PA O2A NAD sing 308 n n PA O5B NAD sing 309 n n PA O3 NAD sing 310 n n O2A HOA2 NAD sing 311 n n O5B C5B NAD sing 312 n n C5B C4B NAD sing 313 n n C5B H51A NAD sing 314 n n C5B H52A NAD sing 315 n n C4B O4B NAD sing 316 n n C4B C3B NAD sing 317 n n C4B H4B NAD sing 318 n n O4B C1B NAD sing 319 n n C3B O3B NAD sing 320 n n C3B C2B NAD sing 321 n n C3B H3B NAD sing 322 n n O3B HO3A NAD sing 323 n n C2B O2B NAD sing 324 n n C2B C1B NAD sing 325 n n C2B H2B NAD sing 326 n n O2B HO2A NAD sing 327 n n C1B N9A NAD sing 328 n n C1B H1B NAD sing 329 n n N9A C8A NAD sing 330 n y N9A C4A NAD sing 331 n y C8A N7A NAD doub 332 n y C8A H8A NAD sing 333 n n N7A C5A NAD sing 334 n y C5A C6A NAD sing 335 n y C5A C4A NAD doub 336 n y C6A N6A NAD sing 337 n n C6A N1A NAD doub 338 n y N6A H61A NAD sing 339 n n N6A H62A NAD sing 340 n n N1A C2A NAD sing 341 n y C2A N3A NAD doub 342 n y C2A H2A NAD sing 343 n n N3A C4A NAD sing 344 n y O3 PN NAD sing 345 n n PN O1N NAD doub 346 n n PN O2N NAD sing 347 n n PN O5D NAD sing 348 n n O5D C5D NAD sing 349 n n C5D C4D NAD sing 350 n n C5D H51N NAD sing 351 n n C5D H52N NAD sing 352 n n C4D O4D NAD sing 353 n n C4D C3D NAD sing 354 n n C4D H4D NAD sing 355 n n O4D C1D NAD sing 356 n n C3D O3D NAD sing 357 n n C3D C2D NAD sing 358 n n C3D H3D NAD sing 359 n n O3D HO3N NAD sing 360 n n C2D O2D NAD sing 361 n n C2D C1D NAD sing 362 n n C2D H2D NAD sing 363 n n O2D HO2N NAD sing 364 n n C1D N1N NAD sing 365 n n C1D H1D NAD sing 366 n n N1N C2N NAD sing 367 n y N1N C6N NAD doub 368 n y C2N C3N NAD doub 369 n y C2N H2N NAD sing 370 n n C3N C7N NAD sing 371 n n C3N C4N NAD sing 372 n y C7N O7N NAD doub 373 n n C7N N7N NAD sing 374 n n N7N H71N NAD sing 375 n n N7N H72N NAD sing 376 n n C4N C5N NAD doub 377 n y C4N H4N NAD sing 378 n n C5N C6N NAD sing 379 n y C5N H5N NAD sing 380 n n C6N H6N NAD sing 381 n n # _atom_sites.entry_id 6KG2 _atom_sites.fract_transf_matrix[1][1] 0.008548 _atom_sites.fract_transf_matrix[1][2] 0.004935 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 D8C A 1 500 500 D8C CAU . D 3 NAD A 1 501 501 NAD NAD . E 4 PO4 A 1 502 502 PO4 PO4 . F 2 D8C B 1 500 500 D8C CAU . G 3 NAD B 1 501 501 NAD NAD . H 4 PO4 B 1 502 502 PO4 PO4 . I 5 HOH A 1 601 160 HOH HOH . I 5 HOH A 2 602 108 HOH HOH . I 5 HOH A 3 603 16 HOH HOH . I 5 HOH A 4 604 79 HOH HOH . I 5 HOH A 5 605 88 HOH HOH . I 5 HOH A 6 606 69 HOH HOH . I 5 HOH A 7 607 127 HOH HOH . I 5 HOH A 8 608 111 HOH HOH . I 5 HOH A 9 609 193 HOH HOH . I 5 HOH A 10 610 9 HOH HOH . I 5 HOH A 11 611 100 HOH HOH . I 5 HOH A 12 612 112 HOH HOH . I 5 HOH A 13 613 54 HOH HOH . I 5 HOH A 14 614 39 HOH HOH . I 5 HOH A 15 615 12 HOH HOH . I 5 HOH A 16 616 26 HOH HOH . I 5 HOH A 17 617 8 HOH HOH . I 5 HOH A 18 618 96 HOH HOH . I 5 HOH A 19 619 66 HOH HOH . I 5 HOH A 20 620 29 HOH HOH . I 5 HOH A 21 621 72 HOH HOH . I 5 HOH A 22 622 34 HOH HOH . I 5 HOH A 23 623 194 HOH HOH . I 5 HOH A 24 624 41 HOH HOH . I 5 HOH A 25 625 89 HOH HOH . I 5 HOH A 26 626 86 HOH HOH . I 5 HOH A 27 627 143 HOH HOH . I 5 HOH A 28 628 121 HOH HOH . I 5 HOH A 29 629 22 HOH HOH . I 5 HOH A 30 630 28 HOH HOH . I 5 HOH A 31 631 57 HOH HOH . I 5 HOH A 32 632 170 HOH HOH . I 5 HOH A 33 633 70 HOH HOH . I 5 HOH A 34 634 32 HOH HOH . I 5 HOH A 35 635 90 HOH HOH . I 5 HOH A 36 636 91 HOH HOH . I 5 HOH A 37 637 18 HOH HOH . I 5 HOH A 38 638 140 HOH HOH . I 5 HOH A 39 639 93 HOH HOH . I 5 HOH A 40 640 61 HOH HOH . I 5 HOH A 41 641 197 HOH HOH . I 5 HOH A 42 642 130 HOH HOH . I 5 HOH A 43 643 50 HOH HOH . I 5 HOH A 44 644 83 HOH HOH . I 5 HOH A 45 645 78 HOH HOH . I 5 HOH A 46 646 94 HOH HOH . I 5 HOH A 47 647 60 HOH HOH . I 5 HOH A 48 648 187 HOH HOH . I 5 HOH A 49 649 84 HOH HOH . I 5 HOH A 50 650 74 HOH HOH . I 5 HOH A 51 651 180 HOH HOH . I 5 HOH A 52 652 162 HOH HOH . J 5 HOH B 1 601 142 HOH HOH . J 5 HOH B 2 602 190 HOH HOH . J 5 HOH B 3 603 20 HOH HOH . J 5 HOH B 4 604 80 HOH HOH . J 5 HOH B 5 605 87 HOH HOH . J 5 HOH B 6 606 135 HOH HOH . J 5 HOH B 7 607 76 HOH HOH . J 5 HOH B 8 608 59 HOH HOH . J 5 HOH B 9 609 48 HOH HOH . J 5 HOH B 10 610 138 HOH HOH . J 5 HOH B 11 611 68 HOH HOH . J 5 HOH B 12 612 30 HOH HOH . J 5 HOH B 13 613 11 HOH HOH . J 5 HOH B 14 614 36 HOH HOH . J 5 HOH B 15 615 85 HOH HOH . J 5 HOH B 16 616 21 HOH HOH . J 5 HOH B 17 617 141 HOH HOH . J 5 HOH B 18 618 31 HOH HOH . J 5 HOH B 19 619 23 HOH HOH . J 5 HOH B 20 620 56 HOH HOH . J 5 HOH B 21 621 125 HOH HOH . J 5 HOH B 22 622 71 HOH HOH . J 5 HOH B 23 623 133 HOH HOH . J 5 HOH B 24 624 6 HOH HOH . J 5 HOH B 25 625 163 HOH HOH . J 5 HOH B 26 626 137 HOH HOH . J 5 HOH B 27 627 101 HOH HOH . J 5 HOH B 28 628 92 HOH HOH . J 5 HOH B 29 629 62 HOH HOH . J 5 HOH B 30 630 82 HOH HOH . J 5 HOH B 31 631 195 HOH HOH . J 5 HOH B 32 632 177 HOH HOH . J 5 HOH B 33 633 44 HOH HOH . J 5 HOH B 34 634 168 HOH HOH . J 5 HOH B 35 635 24 HOH HOH . J 5 HOH B 36 636 116 HOH HOH . J 5 HOH B 37 637 75 HOH HOH . J 5 HOH B 38 638 117 HOH HOH . J 5 HOH B 39 639 27 HOH HOH . J 5 HOH B 40 640 120 HOH HOH . J 5 HOH B 41 641 136 HOH HOH . J 5 HOH B 42 642 104 HOH HOH . J 5 HOH B 43 643 105 HOH HOH . J 5 HOH B 44 644 131 HOH HOH . J 5 HOH B 45 645 198 HOH HOH . J 5 HOH B 46 646 175 HOH HOH . J 5 HOH B 47 647 52 HOH HOH . J 5 HOH B 48 648 119 HOH HOH . J 5 HOH B 49 649 156 HOH HOH . J 5 HOH B 50 650 186 HOH HOH . J 5 HOH B 51 651 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 3 -70.883 -6.799 -32.886 1 66.09 ? PA NAD 501 B 1 HETATM 2 O O1A NAD . . . G 3 -71.393 -8.185 -33.148 1 91.44 ? O1A NAD 501 B 1 HETATM 3 O O2A NAD . . . G 3 -69.606 -6.66 -32.138 1 56.29 ? O2A NAD 501 B 1 HETATM 4 O O5B NAD . . . G 3 -72.029 -5.894 -32.234 1 67.43 ? O5B NAD 501 B 1 HETATM 5 C C5B NAD . . . G 3 -73.239 -5.621 -32.952 1 56.09 ? C5B NAD 501 B 1 HETATM 6 C C4B NAD . . . G 3 -73.585 -4.175 -32.732 1 60.59 ? C4B NAD 501 B 1 HETATM 7 O O4B NAD . . . G 3 -75.021 -4.002 -32.823 1 66.79 ? O4B NAD 501 B 1 HETATM 8 C C3B NAD . . . G 3 -73.173 -3.607 -31.369 1 62.24 ? C3B NAD 501 B 1 HETATM 9 O O3B NAD . . . G 3 -72.512 -2.366 -31.574 1 62.41 ? O3B NAD 501 B 1 HETATM 10 C C2B NAD . . . G 3 -74.503 -3.502 -30.608 1 67.97 ? C2B NAD 501 B 1 HETATM 11 O O2B NAD . . . G 3 -74.591 -2.511 -29.599 1 67.6 ? O2B NAD 501 B 1 HETATM 12 C C1B NAD . . . G 3 -75.467 -3.213 -31.751 1 60.51 ? C1B NAD 501 B 1 HETATM 13 N N9A NAD . . . G 3 -76.823 -3.614 -31.41 1 62.47 ? N9A NAD 501 B 1 HETATM 14 C C8A NAD . . . G 3 -77.151 -4.662 -30.591 1 57.32 ? C8A NAD 501 B 1 HETATM 15 N N7A NAD . . . G 3 -78.442 -4.774 -30.41 1 60.32 ? N7A NAD 501 B 1 HETATM 16 C C5A NAD . . . G 3 -78.998 -3.726 -31.124 1 50.87 ? C5A NAD 501 B 1 HETATM 17 C C6A NAD . . . G 3 -80.325 -3.298 -31.291 1 57.89 ? C6A NAD 501 B 1 HETATM 18 N N6A NAD . . . G 3 -81.367 -3.92 -30.753 1 65.97 ? N6A NAD 501 B 1 HETATM 19 N N1A NAD . . . G 3 -80.546 -2.199 -32.049 1 67.16 ? N1A NAD 501 B 1 HETATM 20 C C2A NAD . . . G 3 -79.482 -1.582 -32.583 1 73.49 ? C2A NAD 501 B 1 HETATM 21 N N3A NAD . . . G 3 -78.19 -1.893 -32.486 1 66.04 ? N3A NAD 501 B 1 HETATM 22 C C4A NAD . . . G 3 -78.009 -2.993 -31.738 1 55.75 ? C4A NAD 501 B 1 HETATM 23 O O3 NAD . . . G 3 -70.74 -6.02 -34.273 1 86.66 ? O3 NAD 501 B 1 HETATM 24 P PN NAD . . . G 3 -70.28 -6.493 -35.729 1 69.22 ? PN NAD 501 B 1 HETATM 25 O O1N NAD . . . G 3 -69.004 -7.271 -35.618 1 71.77 ? O1N NAD 501 B 1 HETATM 26 O O2N NAD . . . G 3 -70.334 -5.274 -36.584 1 85.08 ? O2N NAD 501 B 1 HETATM 27 O O5D NAD . . . G 3 -71.508 -7.456 -36.106 1 81.02 ? O5D NAD 501 B 1 HETATM 28 C C5D NAD . . . G 3 -72.734 -6.816 -36.562 1 76.09 ? C5D NAD 501 B 1 HETATM 29 C C4D NAD . . . G 3 -73.382 -7.637 -37.653 1 75.21 ? C4D NAD 501 B 1 HETATM 30 O O4D NAD . . . G 3 -72.714 -7.375 -38.906 1 66.64 ? O4D NAD 501 B 1 HETATM 31 C C3D NAD . . . G 3 -73.344 -9.166 -37.495 1 74.18 ? C3D NAD 501 B 1 HETATM 32 O O3D NAD . . . G 3 -74.462 -9.718 -38.184 1 72.95 ? O3D NAD 501 B 1 HETATM 33 C C2D NAD . . . G 3 -72.046 -9.49 -38.239 1 75.47 ? C2D NAD 501 B 1 HETATM 34 O O2D NAD . . . G 3 -71.961 -10.855 -38.601 1 70.3 ? O2D NAD 501 B 1 HETATM 35 C C1D NAD . . . G 3 -72.253 -8.602 -39.459 1 69.85 ? C1D NAD 501 B 1 HETATM 36 N N1N NAD . . . G 3 -71.02 -8.363 -40.27 1 69.24 ? N1N NAD 501 B 1 HETATM 37 C C2N NAD . . . G 3 -71.143 -8.429 -41.635 1 64.89 ? C2N NAD 501 B 1 HETATM 38 C C3N NAD . . . G 3 -70.06 -8.226 -42.484 1 65.82 ? C3N NAD 501 B 1 HETATM 39 C C7N NAD . . . G 3 -70.387 -8.358 -43.962 1 76.06 ? C7N NAD 501 B 1 HETATM 40 O O7N NAD . . . G 3 -69.476 -8.556 -44.766 1 85.9 ? O7N NAD 501 B 1 HETATM 41 N N7N NAD . . . G 3 -71.666 -8.286 -44.338 1 66.02 ? N7N NAD 501 B 1 HETATM 42 C C4N NAD . . . G 3 -68.79 -7.95 -41.913 1 62.6 ? C4N NAD 501 B 1 HETATM 43 C C5N NAD . . . G 3 -68.66 -7.88 -40.521 1 63.32 ? C5N NAD 501 B 1 HETATM 44 C C6N NAD . . . G 3 -69.781 -8.07 -39.712 1 61.09 ? C6N NAD 501 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #