data_6KGD # _model_server_result.job_id XZ5RNmXTos73OTPrOk61wQ _model_server_result.datetime_utc '2025-07-30 17:16:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 6KGD # _exptl.entry_id 6KGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KGD _cell.length_a 31.11 _cell.length_b 62.5 _cell.length_c 100.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 7 B ASP 6 1_555 C CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc2 B OD1 ASN 9 B ASN 8 1_555 C CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc3 B OD1 ASP 11 B ASP 10 1_555 C CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc4 B O VAL 13 B VAL 12 1_555 C CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc5 B OD1 ASP 18 B ASP 17 1_555 C CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc6 B OD2 ASP 18 B ASP 17 1_555 C CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc7 B OD1 ASP 40 B ASP 39 1_555 D CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc8 B OD1 ASN 42 B ASN 41 1_555 D CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc9 B OD1 ASP 44 B ASP 43 1_555 D CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc10 B O ALA 46 B ALA 45 1_555 D CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc11 B OD1 ASP 51 B ASP 50 1_555 D CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc12 B OD2 ASP 51 B ASP 50 1_555 D CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6KGD _atom_sites.fract_transf_matrix[1][1] 0.032144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA B 1 101 62 CA CA . D 3 CA B 1 102 63 CA CA . E 4 HOH A 1 201 147 HOH HOH . E 4 HOH A 2 202 386 HOH HOH . E 4 HOH A 3 203 149 HOH HOH . E 4 HOH A 4 204 372 HOH HOH . E 4 HOH A 5 205 192 HOH HOH . E 4 HOH A 6 206 247 HOH HOH . E 4 HOH A 7 207 359 HOH HOH . E 4 HOH A 8 208 148 HOH HOH . E 4 HOH A 9 209 186 HOH HOH . E 4 HOH A 10 210 319 HOH HOH . E 4 HOH A 11 211 289 HOH HOH . E 4 HOH A 12 212 254 HOH HOH . E 4 HOH A 13 213 263 HOH HOH . E 4 HOH A 14 214 276 HOH HOH . E 4 HOH A 15 215 256 HOH HOH . E 4 HOH A 16 216 216 HOH HOH . E 4 HOH A 17 217 299 HOH HOH . E 4 HOH A 18 218 270 HOH HOH . E 4 HOH A 19 219 195 HOH HOH . E 4 HOH A 20 220 300 HOH HOH . E 4 HOH A 21 221 248 HOH HOH . E 4 HOH A 22 222 167 HOH HOH . E 4 HOH A 23 223 230 HOH HOH . E 4 HOH A 24 224 237 HOH HOH . E 4 HOH A 25 225 277 HOH HOH . E 4 HOH A 26 226 176 HOH HOH . E 4 HOH A 27 227 210 HOH HOH . E 4 HOH A 28 228 274 HOH HOH . E 4 HOH A 29 229 354 HOH HOH . E 4 HOH A 30 230 235 HOH HOH . E 4 HOH A 31 231 352 HOH HOH . E 4 HOH A 32 232 245 HOH HOH . E 4 HOH A 33 233 297 HOH HOH . E 4 HOH A 34 234 203 HOH HOH . E 4 HOH A 35 235 373 HOH HOH . E 4 HOH A 36 236 163 HOH HOH . E 4 HOH A 37 237 222 HOH HOH . E 4 HOH A 38 238 310 HOH HOH . E 4 HOH A 39 239 152 HOH HOH . E 4 HOH A 40 240 156 HOH HOH . E 4 HOH A 41 241 265 HOH HOH . E 4 HOH A 42 242 160 HOH HOH . E 4 HOH A 43 243 153 HOH HOH . E 4 HOH A 44 244 170 HOH HOH . E 4 HOH A 45 245 193 HOH HOH . E 4 HOH A 46 246 155 HOH HOH . E 4 HOH A 47 247 244 HOH HOH . E 4 HOH A 48 248 253 HOH HOH . E 4 HOH A 49 249 157 HOH HOH . E 4 HOH A 50 250 165 HOH HOH . E 4 HOH A 51 251 173 HOH HOH . E 4 HOH A 52 252 317 HOH HOH . E 4 HOH A 53 253 363 HOH HOH . E 4 HOH A 54 254 172 HOH HOH . E 4 HOH A 55 255 151 HOH HOH . E 4 HOH A 56 256 268 HOH HOH . E 4 HOH A 57 257 169 HOH HOH . E 4 HOH A 58 258 282 HOH HOH . E 4 HOH A 59 259 174 HOH HOH . E 4 HOH A 60 260 279 HOH HOH . E 4 HOH A 61 261 182 HOH HOH . E 4 HOH A 62 262 271 HOH HOH . E 4 HOH A 63 263 187 HOH HOH . E 4 HOH A 64 264 249 HOH HOH . E 4 HOH A 65 265 250 HOH HOH . E 4 HOH A 66 266 158 HOH HOH . E 4 HOH A 67 267 214 HOH HOH . E 4 HOH A 68 268 191 HOH HOH . E 4 HOH A 69 269 370 HOH HOH . E 4 HOH A 70 270 215 HOH HOH . E 4 HOH A 71 271 293 HOH HOH . E 4 HOH A 72 272 218 HOH HOH . E 4 HOH A 73 273 207 HOH HOH . E 4 HOH A 74 274 196 HOH HOH . E 4 HOH A 75 275 242 HOH HOH . E 4 HOH A 76 276 175 HOH HOH . E 4 HOH A 77 277 217 HOH HOH . E 4 HOH A 78 278 371 HOH HOH . E 4 HOH A 79 279 211 HOH HOH . E 4 HOH A 80 280 251 HOH HOH . E 4 HOH A 81 281 202 HOH HOH . E 4 HOH A 82 282 273 HOH HOH . E 4 HOH A 83 283 239 HOH HOH . E 4 HOH A 84 284 161 HOH HOH . E 4 HOH A 85 285 357 HOH HOH . E 4 HOH A 86 286 362 HOH HOH . E 4 HOH A 87 287 171 HOH HOH . E 4 HOH A 88 288 168 HOH HOH . E 4 HOH A 89 289 360 HOH HOH . E 4 HOH A 90 290 365 HOH HOH . E 4 HOH A 91 291 208 HOH HOH . E 4 HOH A 92 292 272 HOH HOH . E 4 HOH A 93 293 381 HOH HOH . E 4 HOH A 94 294 286 HOH HOH . E 4 HOH A 95 295 185 HOH HOH . E 4 HOH A 96 296 184 HOH HOH . E 4 HOH A 97 297 162 HOH HOH . E 4 HOH A 98 298 200 HOH HOH . E 4 HOH A 99 299 262 HOH HOH . E 4 HOH A 100 300 234 HOH HOH . E 4 HOH A 101 301 194 HOH HOH . E 4 HOH A 102 302 336 HOH HOH . E 4 HOH A 103 303 324 HOH HOH . E 4 HOH A 104 304 159 HOH HOH . E 4 HOH A 105 305 154 HOH HOH . E 4 HOH A 106 306 197 HOH HOH . E 4 HOH A 107 307 212 HOH HOH . E 4 HOH A 108 308 178 HOH HOH . E 4 HOH A 109 309 190 HOH HOH . E 4 HOH A 110 310 229 HOH HOH . E 4 HOH A 111 311 150 HOH HOH . E 4 HOH A 112 312 183 HOH HOH . E 4 HOH A 113 313 177 HOH HOH . E 4 HOH A 114 314 261 HOH HOH . E 4 HOH A 115 315 179 HOH HOH . E 4 HOH A 116 316 288 HOH HOH . E 4 HOH A 117 317 236 HOH HOH . E 4 HOH A 118 318 284 HOH HOH . E 4 HOH A 119 319 166 HOH HOH . E 4 HOH A 120 320 180 HOH HOH . E 4 HOH A 121 321 348 HOH HOH . E 4 HOH A 122 322 231 HOH HOH . E 4 HOH A 123 323 304 HOH HOH . E 4 HOH A 124 324 322 HOH HOH . E 4 HOH A 125 325 199 HOH HOH . E 4 HOH A 126 326 257 HOH HOH . E 4 HOH A 127 327 374 HOH HOH . E 4 HOH A 128 328 71 HOH HOH . E 4 HOH A 129 329 355 HOH HOH . E 4 HOH A 130 330 224 HOH HOH . E 4 HOH A 131 331 240 HOH HOH . E 4 HOH A 132 332 206 HOH HOH . E 4 HOH A 133 333 232 HOH HOH . E 4 HOH A 134 334 219 HOH HOH . E 4 HOH A 135 335 223 HOH HOH . E 4 HOH A 136 336 266 HOH HOH . E 4 HOH A 137 337 227 HOH HOH . E 4 HOH A 138 338 350 HOH HOH . E 4 HOH A 139 339 329 HOH HOH . E 4 HOH A 140 340 205 HOH HOH . E 4 HOH A 141 341 246 HOH HOH . E 4 HOH A 142 342 188 HOH HOH . E 4 HOH A 143 343 233 HOH HOH . E 4 HOH A 144 344 201 HOH HOH . E 4 HOH A 145 345 311 HOH HOH . E 4 HOH A 146 346 209 HOH HOH . E 4 HOH A 147 347 226 HOH HOH . E 4 HOH A 148 348 164 HOH HOH . E 4 HOH A 149 349 204 HOH HOH . E 4 HOH A 150 350 332 HOH HOH . E 4 HOH A 151 351 259 HOH HOH . E 4 HOH A 152 352 260 HOH HOH . E 4 HOH A 153 353 225 HOH HOH . E 4 HOH A 154 354 351 HOH HOH . E 4 HOH A 155 355 330 HOH HOH . E 4 HOH A 156 356 376 HOH HOH . E 4 HOH A 157 357 220 HOH HOH . E 4 HOH A 158 358 379 HOH HOH . E 4 HOH A 159 359 358 HOH HOH . E 4 HOH A 160 360 325 HOH HOH . E 4 HOH A 161 361 335 HOH HOH . E 4 HOH A 162 362 333 HOH HOH . E 4 HOH A 163 363 305 HOH HOH . E 4 HOH A 164 364 287 HOH HOH . E 4 HOH A 165 365 309 HOH HOH . E 4 HOH A 166 366 264 HOH HOH . E 4 HOH A 167 367 356 HOH HOH . E 4 HOH A 168 368 241 HOH HOH . E 4 HOH A 169 369 342 HOH HOH . E 4 HOH A 170 370 353 HOH HOH . E 4 HOH A 171 371 377 HOH HOH . E 4 HOH A 172 372 295 HOH HOH . E 4 HOH A 173 373 318 HOH HOH . E 4 HOH A 174 374 181 HOH HOH . E 4 HOH A 175 375 255 HOH HOH . E 4 HOH A 176 376 298 HOH HOH . E 4 HOH A 177 377 343 HOH HOH . E 4 HOH A 178 378 315 HOH HOH . E 4 HOH A 179 379 213 HOH HOH . E 4 HOH A 180 380 280 HOH HOH . E 4 HOH A 181 381 313 HOH HOH . E 4 HOH A 182 382 292 HOH HOH . E 4 HOH A 183 383 258 HOH HOH . E 4 HOH A 184 384 221 HOH HOH . E 4 HOH A 185 385 331 HOH HOH . E 4 HOH A 186 386 339 HOH HOH . E 4 HOH A 187 387 302 HOH HOH . E 4 HOH A 188 388 306 HOH HOH . E 4 HOH A 189 389 361 HOH HOH . E 4 HOH A 190 390 278 HOH HOH . E 4 HOH A 191 391 243 HOH HOH . E 4 HOH A 192 392 389 HOH HOH . E 4 HOH A 193 393 189 HOH HOH . E 4 HOH A 194 394 327 HOH HOH . E 4 HOH A 195 395 228 HOH HOH . E 4 HOH A 196 396 369 HOH HOH . E 4 HOH A 197 397 285 HOH HOH . E 4 HOH A 198 398 382 HOH HOH . E 4 HOH A 199 399 349 HOH HOH . E 4 HOH A 200 400 321 HOH HOH . E 4 HOH A 201 401 198 HOH HOH . E 4 HOH A 202 402 283 HOH HOH . E 4 HOH A 203 403 383 HOH HOH . E 4 HOH A 204 404 252 HOH HOH . E 4 HOH A 205 405 337 HOH HOH . E 4 HOH A 206 406 117 HOH HOH . E 4 HOH A 207 407 380 HOH HOH . E 4 HOH A 208 408 281 HOH HOH . E 4 HOH A 209 409 291 HOH HOH . E 4 HOH A 210 410 326 HOH HOH . E 4 HOH A 211 411 316 HOH HOH . E 4 HOH A 212 412 290 HOH HOH . E 4 HOH A 213 413 328 HOH HOH . E 4 HOH A 214 414 344 HOH HOH . E 4 HOH A 215 415 275 HOH HOH . E 4 HOH A 216 416 378 HOH HOH . E 4 HOH A 217 417 385 HOH HOH . E 4 HOH A 218 418 307 HOH HOH . E 4 HOH A 219 419 267 HOH HOH . E 4 HOH A 220 420 384 HOH HOH . E 4 HOH A 221 421 338 HOH HOH . E 4 HOH A 222 422 314 HOH HOH . E 4 HOH A 223 423 323 HOH HOH . E 4 HOH A 224 424 366 HOH HOH . E 4 HOH A 225 425 294 HOH HOH . F 4 HOH B 1 201 109 HOH HOH . F 4 HOH B 2 202 79 HOH HOH . F 4 HOH B 3 203 107 HOH HOH . F 4 HOH B 4 204 77 HOH HOH . F 4 HOH B 5 205 74 HOH HOH . F 4 HOH B 6 206 96 HOH HOH . F 4 HOH B 7 207 83 HOH HOH . F 4 HOH B 8 208 88 HOH HOH . F 4 HOH B 9 209 65 HOH HOH . F 4 HOH B 10 210 118 HOH HOH . F 4 HOH B 11 211 69 HOH HOH . F 4 HOH B 12 212 80 HOH HOH . F 4 HOH B 13 213 106 HOH HOH . F 4 HOH B 14 214 116 HOH HOH . F 4 HOH B 15 215 64 HOH HOH . F 4 HOH B 16 216 105 HOH HOH . F 4 HOH B 17 217 95 HOH HOH . F 4 HOH B 18 218 85 HOH HOH . F 4 HOH B 19 219 82 HOH HOH . F 4 HOH B 20 220 68 HOH HOH . F 4 HOH B 21 221 86 HOH HOH . F 4 HOH B 22 222 91 HOH HOH . F 4 HOH B 23 223 66 HOH HOH . F 4 HOH B 24 224 100 HOH HOH . F 4 HOH B 25 225 67 HOH HOH . F 4 HOH B 26 226 70 HOH HOH . F 4 HOH B 27 227 97 HOH HOH . F 4 HOH B 28 228 92 HOH HOH . F 4 HOH B 29 229 76 HOH HOH . F 4 HOH B 30 230 73 HOH HOH . F 4 HOH B 31 231 72 HOH HOH . F 4 HOH B 32 232 84 HOH HOH . F 4 HOH B 33 233 110 HOH HOH . F 4 HOH B 34 234 93 HOH HOH . F 4 HOH B 35 235 87 HOH HOH . F 4 HOH B 36 236 89 HOH HOH . F 4 HOH B 37 237 78 HOH HOH . F 4 HOH B 38 238 81 HOH HOH . F 4 HOH B 39 239 98 HOH HOH . F 4 HOH B 40 240 111 HOH HOH . F 4 HOH B 41 241 108 HOH HOH . F 4 HOH B 42 242 112 HOH HOH . F 4 HOH B 43 243 104 HOH HOH . F 4 HOH B 44 244 101 HOH HOH . F 4 HOH B 45 245 102 HOH HOH . F 4 HOH B 46 246 94 HOH HOH . F 4 HOH B 47 247 90 HOH HOH . F 4 HOH B 48 248 75 HOH HOH . F 4 HOH B 49 249 113 HOH HOH . F 4 HOH B 50 250 115 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -5.342 _atom_site.Cartn_y 7.249 _atom_site.Cartn_z -39.242 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 898 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #