data_6KGF # _model_server_result.job_id FKAUNK0tJOMyTwQne-oBBQ _model_server_result.datetime_utc '2024-11-27 13:36:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kgf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":102}' # _entry.id 6KGF # _exptl.entry_id 6KGF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KGF _cell.length_a 41.65 _cell.length_b 75.97 _cell.length_c 120.33 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KGF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 7 D ASP 6 1_555 E CA CA . D CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc2 B OD1 ASN 9 D ASN 8 1_555 E CA CA . D CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc3 B OD1 ASP 11 D ASP 10 1_555 E CA CA . D CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc4 B O VAL 13 D VAL 12 1_555 E CA CA . D CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc5 B OD1 ASP 18 D ASP 17 1_555 E CA CA . D CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc6 B OD2 ASP 18 D ASP 17 1_555 E CA CA . D CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc7 B OD1 ASP 40 D ASP 39 1_555 F CA CA . D CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc8 B OD1 ASN 42 D ASN 41 1_555 F CA CA . D CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc9 B OD1 ASP 44 D ASP 43 1_555 F CA CA . D CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc10 B O ALA 46 D ALA 45 1_555 F CA CA . D CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc11 B OD1 ASP 51 D ASP 50 1_555 F CA CA . D CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc12 B OD2 ASP 51 D ASP 50 1_555 F CA CA . D CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc13 D OD1 ASP 7 B ASP 6 1_555 G CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc14 D OD1 ASN 9 B ASN 8 1_555 G CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc15 D OD1 ASP 11 B ASP 10 1_555 G CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc16 D O VAL 13 B VAL 12 1_555 G CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc17 D OD1 ASP 18 B ASP 17 1_555 G CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc18 D OD2 ASP 18 B ASP 17 1_555 G CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc19 D OD1 ASP 40 B ASP 39 1_555 H CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc20 D OD1 ASN 42 B ASN 41 1_555 H CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc21 D OD1 ASP 44 B ASP 43 1_555 H CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc22 D O ALA 46 B ALA 45 1_555 H CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc23 D OD1 ASP 51 B ASP 50 1_555 H CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc24 D OD2 ASP 51 B ASP 50 1_555 H CA CA . B CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6KGF _atom_sites.fract_transf_matrix[1][1] 0.02401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA D 1 101 62 CA CA . F 3 CA D 1 102 63 CA CA . G 3 CA B 1 101 62 CA CA . H 3 CA B 1 102 63 CA CA . I 4 HOH C 1 201 149 HOH HOH . I 4 HOH C 2 202 206 HOH HOH . I 4 HOH C 3 203 76 HOH HOH . I 4 HOH C 4 204 179 HOH HOH . I 4 HOH C 5 205 194 HOH HOH . I 4 HOH C 6 206 178 HOH HOH . I 4 HOH C 7 207 192 HOH HOH . I 4 HOH C 8 208 222 HOH HOH . I 4 HOH C 9 209 202 HOH HOH . I 4 HOH C 10 210 150 HOH HOH . I 4 HOH C 11 211 148 HOH HOH . I 4 HOH C 12 212 195 HOH HOH . I 4 HOH C 13 213 156 HOH HOH . I 4 HOH C 14 214 211 HOH HOH . I 4 HOH C 15 215 147 HOH HOH . I 4 HOH C 16 216 153 HOH HOH . I 4 HOH C 17 217 214 HOH HOH . I 4 HOH C 18 218 170 HOH HOH . I 4 HOH C 19 219 151 HOH HOH . I 4 HOH C 20 220 227 HOH HOH . I 4 HOH C 21 221 193 HOH HOH . I 4 HOH C 22 222 167 HOH HOH . I 4 HOH C 23 223 157 HOH HOH . I 4 HOH C 24 224 233 HOH HOH . I 4 HOH C 25 225 174 HOH HOH . I 4 HOH C 26 226 209 HOH HOH . I 4 HOH C 27 227 212 HOH HOH . I 4 HOH C 28 228 171 HOH HOH . I 4 HOH C 29 229 203 HOH HOH . I 4 HOH C 30 230 172 HOH HOH . I 4 HOH C 31 231 173 HOH HOH . I 4 HOH C 32 232 183 HOH HOH . I 4 HOH C 33 233 164 HOH HOH . I 4 HOH C 34 234 176 HOH HOH . I 4 HOH C 35 235 235 HOH HOH . I 4 HOH C 36 236 163 HOH HOH . I 4 HOH C 37 237 225 HOH HOH . I 4 HOH C 38 238 186 HOH HOH . I 4 HOH C 39 239 174 HOH HOH . I 4 HOH C 40 240 181 HOH HOH . I 4 HOH C 41 241 166 HOH HOH . I 4 HOH C 42 242 159 HOH HOH . I 4 HOH C 43 243 154 HOH HOH . I 4 HOH C 44 244 161 HOH HOH . I 4 HOH C 45 245 87 HOH HOH . I 4 HOH C 46 246 189 HOH HOH . I 4 HOH C 47 247 213 HOH HOH . I 4 HOH C 48 248 210 HOH HOH . I 4 HOH C 49 249 190 HOH HOH . I 4 HOH C 50 250 165 HOH HOH . I 4 HOH C 51 251 197 HOH HOH . I 4 HOH C 52 252 169 HOH HOH . I 4 HOH C 53 253 160 HOH HOH . I 4 HOH C 54 254 177 HOH HOH . I 4 HOH C 55 255 155 HOH HOH . I 4 HOH C 56 256 175 HOH HOH . I 4 HOH C 57 257 200 HOH HOH . I 4 HOH C 58 258 158 HOH HOH . I 4 HOH C 59 259 152 HOH HOH . I 4 HOH C 60 260 239 HOH HOH . I 4 HOH C 61 261 199 HOH HOH . I 4 HOH C 62 262 240 HOH HOH . I 4 HOH C 63 263 236 HOH HOH . I 4 HOH C 64 264 219 HOH HOH . I 4 HOH C 65 265 191 HOH HOH . I 4 HOH C 66 266 187 HOH HOH . I 4 HOH C 67 267 201 HOH HOH . I 4 HOH C 68 268 208 HOH HOH . I 4 HOH C 69 269 168 HOH HOH . I 4 HOH C 70 270 217 HOH HOH . I 4 HOH C 71 271 237 HOH HOH . I 4 HOH C 72 272 234 HOH HOH . I 4 HOH C 73 273 162 HOH HOH . I 4 HOH C 74 274 79 HOH HOH . I 4 HOH C 75 275 226 HOH HOH . I 4 HOH C 76 276 223 HOH HOH . I 4 HOH C 77 277 232 HOH HOH . I 4 HOH C 78 278 218 HOH HOH . I 4 HOH C 79 279 188 HOH HOH . I 4 HOH C 80 280 185 HOH HOH . I 4 HOH C 81 281 215 HOH HOH . I 4 HOH C 82 282 184 HOH HOH . I 4 HOH C 83 283 229 HOH HOH . I 4 HOH C 84 284 238 HOH HOH . I 4 HOH C 85 285 204 HOH HOH . I 4 HOH C 86 286 230 HOH HOH . I 4 HOH C 87 287 182 HOH HOH . I 4 HOH C 88 288 84 HOH HOH . I 4 HOH C 89 289 221 HOH HOH . I 4 HOH C 90 290 205 HOH HOH . J 4 HOH D 1 201 64 HOH HOH . J 4 HOH D 2 202 72 HOH HOH . J 4 HOH D 3 203 69 HOH HOH . J 4 HOH D 4 204 68 HOH HOH . J 4 HOH D 5 205 95 HOH HOH . J 4 HOH D 6 206 94 HOH HOH . J 4 HOH D 7 207 75 HOH HOH . J 4 HOH D 8 208 74 HOH HOH . J 4 HOH D 9 209 83 HOH HOH . J 4 HOH D 10 210 96 HOH HOH . J 4 HOH D 11 211 66 HOH HOH . J 4 HOH D 12 212 85 HOH HOH . J 4 HOH D 13 213 82 HOH HOH . J 4 HOH D 14 214 87 HOH HOH . J 4 HOH D 15 215 100 HOH HOH . J 4 HOH D 16 216 81 HOH HOH . J 4 HOH D 17 217 65 HOH HOH . J 4 HOH D 18 218 88 HOH HOH . J 4 HOH D 19 219 77 HOH HOH . J 4 HOH D 20 220 67 HOH HOH . J 4 HOH D 21 221 76 HOH HOH . J 4 HOH D 22 222 198 HOH HOH . J 4 HOH D 23 223 80 HOH HOH . J 4 HOH D 24 224 196 HOH HOH . J 4 HOH D 25 225 231 HOH HOH . J 4 HOH D 26 226 90 HOH HOH . J 4 HOH D 27 227 97 HOH HOH . J 4 HOH D 28 228 86 HOH HOH . J 4 HOH D 29 229 70 HOH HOH . J 4 HOH D 30 230 99 HOH HOH . J 4 HOH D 31 231 92 HOH HOH . J 4 HOH D 32 232 91 HOH HOH . J 4 HOH D 33 233 73 HOH HOH . J 4 HOH D 34 234 84 HOH HOH . J 4 HOH D 35 235 101 HOH HOH . J 4 HOH D 36 236 98 HOH HOH . J 4 HOH D 37 237 78 HOH HOH . J 4 HOH D 38 238 93 HOH HOH . J 4 HOH D 39 239 216 HOH HOH . K 4 HOH A 1 201 181 HOH HOH . K 4 HOH A 2 202 162 HOH HOH . K 4 HOH A 3 203 152 HOH HOH . K 4 HOH A 4 204 155 HOH HOH . K 4 HOH A 5 205 177 HOH HOH . K 4 HOH A 6 206 167 HOH HOH . K 4 HOH A 7 207 160 HOH HOH . K 4 HOH A 8 208 153 HOH HOH . K 4 HOH A 9 209 159 HOH HOH . K 4 HOH A 10 210 173 HOH HOH . K 4 HOH A 11 211 183 HOH HOH . K 4 HOH A 12 212 163 HOH HOH . K 4 HOH A 13 213 154 HOH HOH . K 4 HOH A 14 214 150 HOH HOH . K 4 HOH A 15 215 147 HOH HOH . K 4 HOH A 16 216 164 HOH HOH . K 4 HOH A 17 217 187 HOH HOH . K 4 HOH A 18 218 71 HOH HOH . K 4 HOH A 19 219 161 HOH HOH . K 4 HOH A 20 220 165 HOH HOH . K 4 HOH A 21 221 180 HOH HOH . K 4 HOH A 22 222 178 HOH HOH . K 4 HOH A 23 223 184 HOH HOH . K 4 HOH A 24 224 180 HOH HOH . K 4 HOH A 25 225 191 HOH HOH . K 4 HOH A 26 226 185 HOH HOH . K 4 HOH A 27 227 182 HOH HOH . K 4 HOH A 28 228 156 HOH HOH . K 4 HOH A 29 229 168 HOH HOH . K 4 HOH A 30 230 172 HOH HOH . K 4 HOH A 31 231 179 HOH HOH . K 4 HOH A 32 232 151 HOH HOH . K 4 HOH A 33 233 171 HOH HOH . K 4 HOH A 34 234 157 HOH HOH . K 4 HOH A 35 235 186 HOH HOH . K 4 HOH A 36 236 188 HOH HOH . K 4 HOH A 37 237 189 HOH HOH . K 4 HOH A 38 238 190 HOH HOH . K 4 HOH A 39 239 158 HOH HOH . K 4 HOH A 40 240 148 HOH HOH . K 4 HOH A 41 241 170 HOH HOH . K 4 HOH A 42 242 166 HOH HOH . K 4 HOH A 43 243 176 HOH HOH . L 4 HOH B 1 201 65 HOH HOH . L 4 HOH B 2 202 67 HOH HOH . L 4 HOH B 3 203 64 HOH HOH . L 4 HOH B 4 204 73 HOH HOH . L 4 HOH B 5 205 72 HOH HOH . L 4 HOH B 6 206 66 HOH HOH . L 4 HOH B 7 207 70 HOH HOH . L 4 HOH B 8 208 71 HOH HOH . L 4 HOH B 9 209 77 HOH HOH . L 4 HOH B 10 210 75 HOH HOH . L 4 HOH B 11 211 82 HOH HOH . L 4 HOH B 12 212 68 HOH HOH . L 4 HOH B 13 213 207 HOH HOH . L 4 HOH B 14 214 149 HOH HOH . L 4 HOH B 15 215 69 HOH HOH . L 4 HOH B 16 216 83 HOH HOH . L 4 HOH B 17 217 74 HOH HOH . L 4 HOH B 18 218 81 HOH HOH . L 4 HOH B 19 219 85 HOH HOH . L 4 HOH B 20 220 80 HOH HOH . L 4 HOH B 21 221 78 HOH HOH . L 4 HOH B 22 222 79 HOH HOH . L 4 HOH B 23 223 88 HOH HOH . L 4 HOH B 24 224 175 HOH HOH . L 4 HOH B 25 225 86 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 19.9 _atom_site.Cartn_y 5.35 _atom_site.Cartn_z -33.614 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 102 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 1 #