data_6KGL
#
_model_server_result.job_id            DZA16I1vjx4tIja_NqIzWA 
_model_server_result.datetime_utc      '2024-11-24 04:49:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6kgl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    6KGL 
#
_exptl.entry_id    6KGL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6KGL 
_cell.length_a            119.545 
_cell.length_b            178.549 
_cell.length_c            234.194 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6KGL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    'I 2 2' 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 255 n n 
C1 C2 GOL sing 256 n n 
C1 H11 GOL sing 257 n n 
C1 H12 GOL sing 258 n n 
O1 HO1 GOL sing 259 n n 
C2 O2 GOL sing 260 n n 
C2 C3 GOL sing 261 n n 
C2 H2 GOL sing 262 n n 
O2 HO2 GOL sing 263 n n 
C3 O3 GOL sing 264 n n 
C3 H31 GOL sing 265 n n 
C3 H32 GOL sing 266 n n 
O3 HO3 GOL sing 267 n n 
#
_atom_sites.entry_id                     6KGL 
_atom_sites.fract_transf_matrix[1][1]    0.008365 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005601 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00427 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 901 901 GOL GOL . 
D 3 GOL A 1 902 902 GOL GOL . 
E 3 GOL A 1 903 903 GOL GOL . 
F 4 DJ0 A 1 904 1001 DJ0 XXX . 
G 5 FAD A 1 905 1001 FAD XXX . 
H 6 HOH A 1 1001 18 HOH HOH . 
H 6 HOH A 2 1002 6 HOH HOH . 
H 6 HOH A 3 1003 87 HOH HOH . 
H 6 HOH A 4 1004 75 HOH HOH . 
H 6 HOH A 5 1005 81 HOH HOH . 
H 6 HOH A 6 1006 31 HOH HOH . 
H 6 HOH A 7 1007 4 HOH HOH . 
H 6 HOH A 8 1008 74 HOH HOH . 
H 6 HOH A 9 1009 40 HOH HOH . 
H 6 HOH A 10 1010 1 HOH HOH . 
H 6 HOH A 11 1011 11 HOH HOH . 
H 6 HOH A 12 1012 77 HOH HOH . 
H 6 HOH A 13 1013 10 HOH HOH . 
H 6 HOH A 14 1014 19 HOH HOH . 
H 6 HOH A 15 1015 8 HOH HOH . 
H 6 HOH A 16 1016 12 HOH HOH . 
H 6 HOH A 17 1017 7 HOH HOH . 
H 6 HOH A 18 1018 22 HOH HOH . 
H 6 HOH A 19 1019 59 HOH HOH . 
H 6 HOH A 20 1020 39 HOH HOH . 
H 6 HOH A 21 1021 50 HOH HOH . 
H 6 HOH A 22 1022 79 HOH HOH . 
H 6 HOH A 23 1023 15 HOH HOH . 
H 6 HOH A 24 1024 9 HOH HOH . 
H 6 HOH A 25 1025 47 HOH HOH . 
H 6 HOH A 26 1026 42 HOH HOH . 
H 6 HOH A 27 1027 71 HOH HOH . 
H 6 HOH A 28 1028 2 HOH HOH . 
H 6 HOH A 29 1029 21 HOH HOH . 
H 6 HOH A 30 1030 48 HOH HOH . 
H 6 HOH A 31 1031 13 HOH HOH . 
H 6 HOH A 32 1032 5 HOH HOH . 
H 6 HOH A 33 1033 52 HOH HOH . 
H 6 HOH A 34 1034 85 HOH HOH . 
H 6 HOH A 35 1035 66 HOH HOH . 
H 6 HOH A 36 1036 53 HOH HOH . 
H 6 HOH A 37 1037 26 HOH HOH . 
H 6 HOH A 38 1038 37 HOH HOH . 
H 6 HOH A 39 1039 51 HOH HOH . 
H 6 HOH A 40 1040 56 HOH HOH . 
H 6 HOH A 41 1041 86 HOH HOH . 
H 6 HOH A 42 1042 17 HOH HOH . 
H 6 HOH A 43 1043 78 HOH HOH . 
H 6 HOH A 44 1044 83 HOH HOH . 
H 6 HOH A 45 1045 73 HOH HOH . 
H 6 HOH A 46 1046 80 HOH HOH . 
H 6 HOH A 47 1047 32 HOH HOH . 
H 6 HOH A 48 1048 28 HOH HOH . 
H 6 HOH A 49 1049 34 HOH HOH . 
H 6 HOH A 50 1050 76 HOH HOH . 
H 6 HOH A 51 1051 3 HOH HOH . 
H 6 HOH A 52 1052 84 HOH HOH . 
H 6 HOH A 53 1053 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -10.548 -48.387 -43.658 1 73.76 ? C1 GOL 901 A 1 
HETATM 2 O O1 GOL . . . C 3 -9.741 -49.535 -43.451 1 71.35 ? O1 GOL 901 A 1 
HETATM 3 C C2 GOL . . . C 3 -10.341 -47.959 -45.137 1 79.86 ? C2 GOL 901 A 1 
HETATM 4 O O2 GOL . . . C 3 -10.521 -49.009 -46.024 1 75.38 ? O2 GOL 901 A 1 
HETATM 5 C C3 GOL . . . C 3 -11.339 -46.777 -45.374 1 87.45 ? C3 GOL 901 A 1 
HETATM 6 O O3 GOL . . . C 3 -12.563 -47.336 -45.739 1 92.49 ? O3 GOL 901 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           6 
#