data_6KGL # _model_server_result.job_id RFp2YM-54wJNW1hOwY-izw _model_server_result.datetime_utc '2024-11-24 05:09:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kgl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":904}' # _entry.id 6KGL # _exptl.entry_id 6KGL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.278 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 3-[3,5-bis(fluoranyl)-2-phenylmethoxy-phenyl]propanal _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KGL _cell.length_a 119.545 _cell.length_b 178.549 _cell.length_c 234.194 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KGL _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H14 F2 O2' _chem_comp.formula_weight 276.278 _chem_comp.id DJ0 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[3,5-bis(fluoranyl)-2-phenylmethoxy-phenyl]propanal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C27 DJ0 doub 83 n n C27 C28 DJ0 sing 84 n n C28 C29 DJ0 sing 85 n n O16 C36 DJ0 sing 86 n n O16 C31 DJ0 sing 87 n n C36 C37 DJ0 sing 88 n n C29 C30 DJ0 sing 89 n n C31 C30 DJ0 doub 90 n y C31 C32 DJ0 sing 91 n y C30 C35 DJ0 sing 92 n y F C32 DJ0 sing 93 n n C37 C38 DJ0 doub 94 n y C37 C42 DJ0 sing 95 n y C32 C33 DJ0 doub 96 n y C38 C39 DJ0 sing 97 n y C35 C34 DJ0 doub 98 n y C42 C41 DJ0 doub 99 n y C33 C34 DJ0 sing 100 n y C34 F1 DJ0 sing 101 n n C39 C40 DJ0 doub 102 n y C41 C40 DJ0 sing 103 n y C27 H1 DJ0 sing 104 n n C28 H2 DJ0 sing 105 n n C28 H3 DJ0 sing 106 n n C29 H4 DJ0 sing 107 n n C29 H5 DJ0 sing 108 n n C33 H6 DJ0 sing 109 n n C35 H7 DJ0 sing 110 n n C36 H8 DJ0 sing 111 n n C36 H9 DJ0 sing 112 n n C38 H10 DJ0 sing 113 n n C39 H11 DJ0 sing 114 n n C40 H12 DJ0 sing 115 n n C41 H13 DJ0 sing 116 n n C42 H14 DJ0 sing 117 n n # _atom_sites.entry_id 6KGL _atom_sites.fract_transf_matrix[1][1] 0.008365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 901 901 GOL GOL . D 3 GOL A 1 902 902 GOL GOL . E 3 GOL A 1 903 903 GOL GOL . F 4 DJ0 A 1 904 1001 DJ0 XXX . G 5 FAD A 1 905 1001 FAD XXX . H 6 HOH A 1 1001 18 HOH HOH . H 6 HOH A 2 1002 6 HOH HOH . H 6 HOH A 3 1003 87 HOH HOH . H 6 HOH A 4 1004 75 HOH HOH . H 6 HOH A 5 1005 81 HOH HOH . H 6 HOH A 6 1006 31 HOH HOH . H 6 HOH A 7 1007 4 HOH HOH . H 6 HOH A 8 1008 74 HOH HOH . H 6 HOH A 9 1009 40 HOH HOH . H 6 HOH A 10 1010 1 HOH HOH . H 6 HOH A 11 1011 11 HOH HOH . H 6 HOH A 12 1012 77 HOH HOH . H 6 HOH A 13 1013 10 HOH HOH . H 6 HOH A 14 1014 19 HOH HOH . H 6 HOH A 15 1015 8 HOH HOH . H 6 HOH A 16 1016 12 HOH HOH . H 6 HOH A 17 1017 7 HOH HOH . H 6 HOH A 18 1018 22 HOH HOH . H 6 HOH A 19 1019 59 HOH HOH . H 6 HOH A 20 1020 39 HOH HOH . H 6 HOH A 21 1021 50 HOH HOH . H 6 HOH A 22 1022 79 HOH HOH . H 6 HOH A 23 1023 15 HOH HOH . H 6 HOH A 24 1024 9 HOH HOH . H 6 HOH A 25 1025 47 HOH HOH . H 6 HOH A 26 1026 42 HOH HOH . H 6 HOH A 27 1027 71 HOH HOH . H 6 HOH A 28 1028 2 HOH HOH . H 6 HOH A 29 1029 21 HOH HOH . H 6 HOH A 30 1030 48 HOH HOH . H 6 HOH A 31 1031 13 HOH HOH . H 6 HOH A 32 1032 5 HOH HOH . H 6 HOH A 33 1033 52 HOH HOH . H 6 HOH A 34 1034 85 HOH HOH . H 6 HOH A 35 1035 66 HOH HOH . H 6 HOH A 36 1036 53 HOH HOH . H 6 HOH A 37 1037 26 HOH HOH . H 6 HOH A 38 1038 37 HOH HOH . H 6 HOH A 39 1039 51 HOH HOH . H 6 HOH A 40 1040 56 HOH HOH . H 6 HOH A 41 1041 86 HOH HOH . H 6 HOH A 42 1042 17 HOH HOH . H 6 HOH A 43 1043 78 HOH HOH . H 6 HOH A 44 1044 83 HOH HOH . H 6 HOH A 45 1045 73 HOH HOH . H 6 HOH A 46 1046 80 HOH HOH . H 6 HOH A 47 1047 32 HOH HOH . H 6 HOH A 48 1048 28 HOH HOH . H 6 HOH A 49 1049 34 HOH HOH . H 6 HOH A 50 1050 76 HOH HOH . H 6 HOH A 51 1051 3 HOH HOH . H 6 HOH A 52 1052 84 HOH HOH . H 6 HOH A 53 1053 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 DJ0 . . . F 4 7.633 -56.719 -36.209 1 71.52 ? C27 DJ0 904 A 1 HETATM 2 C C28 DJ0 . . . F 4 6.83 -55.501 -35.796 1 68.88 ? C28 DJ0 904 A 1 HETATM 3 C C29 DJ0 . . . F 4 5.746 -55.829 -34.755 1 73.71 ? C29 DJ0 904 A 1 HETATM 4 C C30 DJ0 . . . F 4 5.484 -54.845 -33.621 1 85.61 ? C30 DJ0 904 A 1 HETATM 5 C C31 DJ0 . . . F 4 6.382 -53.845 -33.215 1 97.29 ? C31 DJ0 904 A 1 HETATM 6 C C32 DJ0 . . . F 4 6.048 -53.057 -32.117 1 100.91 ? C32 DJ0 904 A 1 HETATM 7 C C33 DJ0 . . . F 4 4.885 -53.207 -31.414 1 102.06 ? C33 DJ0 904 A 1 HETATM 8 C C34 DJ0 . . . F 4 4.035 -54.184 -31.844 1 94.15 ? C34 DJ0 904 A 1 HETATM 9 C C35 DJ0 . . . F 4 4.294 -54.998 -32.915 1 96.28 ? C35 DJ0 904 A 1 HETATM 10 C C36 DJ0 . . . F 4 8.072 -52.381 -34.246 1 96.64 ? C36 DJ0 904 A 1 HETATM 11 C C37 DJ0 . . . F 4 6.992 -51.498 -34.805 1 95.79 ? C37 DJ0 904 A 1 HETATM 12 C C38 DJ0 . . . F 4 6.355 -51.816 -35.997 1 94.02 ? C38 DJ0 904 A 1 HETATM 13 C C39 DJ0 . . . F 4 5.396 -50.972 -36.534 1 89.87 ? C39 DJ0 904 A 1 HETATM 14 C C40 DJ0 . . . F 4 5.06 -49.8 -35.887 1 84.99 ? C40 DJ0 904 A 1 HETATM 15 C C41 DJ0 . . . F 4 5.684 -49.472 -34.705 1 86.53 ? C41 DJ0 904 A 1 HETATM 16 C C42 DJ0 . . . F 4 6.643 -50.315 -34.165 1 95.14 ? C42 DJ0 904 A 1 HETATM 17 F F DJ0 . . . F 4 6.922 -52.12 -31.714 1 102.46 ? F DJ0 904 A 1 HETATM 18 F F1 DJ0 . . . F 4 2.863 -54.345 -31.186 1 82.96 ? F1 DJ0 904 A 1 HETATM 19 O O15 DJ0 . . . F 4 8.216 -56.758 -37.286 1 76.13 ? O15 DJ0 904 A 1 HETATM 20 O O16 DJ0 . . . F 4 7.595 -53.694 -33.87 1 104.29 ? O16 DJ0 904 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #