data_6KGM # _model_server_result.job_id jlwLCaVO66mGX543m_ZQ1Q _model_server_result.datetime_utc '2024-11-30 19:58:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6kgm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 6KGM # _exptl.entry_id 6KGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6KGM _cell.length_a 120.451 _cell.length_b 178.696 _cell.length_c 235.256 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6KGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 255 n n C1 C2 GOL sing 256 n n C1 H11 GOL sing 257 n n C1 H12 GOL sing 258 n n O1 HO1 GOL sing 259 n n C2 O2 GOL sing 260 n n C2 C3 GOL sing 261 n n C2 H2 GOL sing 262 n n O2 HO2 GOL sing 263 n n C3 O3 GOL sing 264 n n C3 H31 GOL sing 265 n n C3 H32 GOL sing 266 n n O3 HO3 GOL sing 267 n n # _atom_sites.entry_id 6KGM _atom_sites.fract_transf_matrix[1][1] 0.008302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 901 901 GOL GOL . D 3 GOL A 1 902 902 GOL GOL . E 3 GOL A 1 903 903 GOL GOL . F 3 GOL A 1 904 904 GOL GOL . G 3 GOL A 1 905 905 GOL GOL . H 4 DJ0 A 1 906 1001 DJ0 XXX . I 5 FAD A 1 907 1001 FAD XXX . J 6 HOH A 1 1001 151 HOH HOH . J 6 HOH A 2 1002 13 HOH HOH . J 6 HOH A 3 1003 18 HOH HOH . J 6 HOH A 4 1004 1 HOH HOH . J 6 HOH A 5 1005 8 HOH HOH . J 6 HOH A 6 1006 27 HOH HOH . J 6 HOH A 7 1007 150 HOH HOH . J 6 HOH A 8 1008 137 HOH HOH . J 6 HOH A 9 1009 6 HOH HOH . J 6 HOH A 10 1010 162 HOH HOH . J 6 HOH A 11 1011 16 HOH HOH . J 6 HOH A 12 1012 136 HOH HOH . J 6 HOH A 13 1013 22 HOH HOH . J 6 HOH A 14 1014 5 HOH HOH . J 6 HOH A 15 1015 2 HOH HOH . J 6 HOH A 16 1016 30 HOH HOH . J 6 HOH A 17 1017 15 HOH HOH . J 6 HOH A 18 1018 148 HOH HOH . J 6 HOH A 19 1019 33 HOH HOH . J 6 HOH A 20 1020 3 HOH HOH . J 6 HOH A 21 1021 7 HOH HOH . J 6 HOH A 22 1022 10 HOH HOH . J 6 HOH A 23 1023 26 HOH HOH . J 6 HOH A 24 1024 32 HOH HOH . J 6 HOH A 25 1025 14 HOH HOH . J 6 HOH A 26 1026 163 HOH HOH . J 6 HOH A 27 1027 12 HOH HOH . J 6 HOH A 28 1028 35 HOH HOH . J 6 HOH A 29 1029 165 HOH HOH . J 6 HOH A 30 1030 9 HOH HOH . J 6 HOH A 31 1031 17 HOH HOH . J 6 HOH A 32 1032 161 HOH HOH . J 6 HOH A 33 1033 11 HOH HOH . J 6 HOH A 34 1034 4 HOH HOH . J 6 HOH A 35 1035 146 HOH HOH . J 6 HOH A 36 1036 28 HOH HOH . J 6 HOH A 37 1037 25 HOH HOH . J 6 HOH A 38 1038 20 HOH HOH . J 6 HOH A 39 1039 144 HOH HOH . J 6 HOH A 40 1040 138 HOH HOH . J 6 HOH A 41 1041 147 HOH HOH . J 6 HOH A 42 1042 31 HOH HOH . J 6 HOH A 43 1043 149 HOH HOH . J 6 HOH A 44 1044 24 HOH HOH . J 6 HOH A 45 1045 21 HOH HOH . J 6 HOH A 46 1046 19 HOH HOH . J 6 HOH A 47 1047 23 HOH HOH . J 6 HOH A 48 1048 29 HOH HOH . J 6 HOH A 49 1049 155 HOH HOH . J 6 HOH A 50 1050 145 HOH HOH . J 6 HOH A 51 1051 143 HOH HOH . J 6 HOH A 52 1052 139 HOH HOH . J 6 HOH A 53 1053 34 HOH HOH . J 6 HOH A 54 1054 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -10.677 -48.481 -43.775 1 71.02 ? C1 GOL 901 A 1 HETATM 2 O O1 GOL . . . C 3 -9.734 -49.528 -43.591 1 68.84 ? O1 GOL 901 A 1 HETATM 3 C C2 GOL . . . C 3 -10.463 -47.943 -45.21 1 79.98 ? C2 GOL 901 A 1 HETATM 4 O O2 GOL . . . C 3 -10.551 -48.931 -46.189 1 71.91 ? O2 GOL 901 A 1 HETATM 5 C C3 GOL . . . C 3 -11.496 -46.777 -45.375 1 86.33 ? C3 GOL 901 A 1 HETATM 6 O O3 GOL . . . C 3 -12.617 -47.3 -46.004 1 90.24 ? O3 GOL 901 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #